Lsi02G024290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G024290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ankyrin repeat protein
Location	chr02: 30850733 .. 30851257 (-)
RNA-Seq Expression	Lsi02G024290
Synteny	Lsi02G024290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGGTTTTAAGCTTTTTCACACCTTGTTGTTAGTGTTTGCTTGGCATTGTTGTGTGAAGGTTGATGCCACTTTCAATGATGTCACCGGCATATTCGGTCGCGGCTTCAACCATCGTTGCTTTTCCTTCCGTCATACATTTGGATCAAGTGGTATCACTATGCATTCCAACACCCGTGGTAGCAGCGCGTCGAGTGCCATAGACATCGAGAGTCGTGCACCAACCCCAACACCAACACCTAAGATTGTCCCTGTTGGACTCGAAACTGATTCGATAATAAACATGCGTGAGATGGATGCTTTTGTTTCTAAAGATCATGATATTCATTGGAAGAGTGGTGGTGATATTGCTCTTTCTCATGGTGGAATAATTAGTCGAAAGGTCAAAAGTGGTAATATTGGTGTAAAGAGCAATAACAATATTGTTGTTTCTCATGGTCTTCAAACTACAATGAGTAGACATAACAAAGCTTTGTCTTTTGGTGTAGAAATAAGGAAGCACCAAAAGTCGGTGGTTTGA

mRNA sequence

ATGGATAAAGGTTTTAAGCTTTTTCACACCTTGTTGTTAGTGTTTGCTTGGCATTGTTGTGTGAAGGTTGATGCCACTTTCAATGATGTCACCGGCATATTCGGTCGCGGCTTCAACCATCGTTGCTTTTCCTTCCGTCATACATTTGGATCAAGTGGTATCACTATGCATTCCAACACCCGTGGTAGCAGCGCGTCGAGTGCCATAGACATCGAGAGTCGTGCACCAACCCCAACACCAACACCTAAGATTGTCCCTGTTGGACTCGAAACTGATTCGATAATAAACATGCGTGAGATGGATGCTTTTGTTTCTAAAGATCATGATATTCATTGGAAGAGTGGTGGTGATATTGCTCTTTCTCATGGTGGAATAATTAGTCGAAAGGTCAAAAGTGGTAATATTGGTGTAAAGAGCAATAACAATATTGTTGTTTCTCATGGTCTTCAAACTACAATGAGTAGACATAACAAAGCTTTGTCTTTTGGTGTAGAAATAAGGAAGCACCAAAAGTCGGTGGTTTGA

Coding sequence (CDS)

ATGGATAAAGGTTTTAAGCTTTTTCACACCTTGTTGTTAGTGTTTGCTTGGCATTGTTGTGTGAAGGTTGATGCCACTTTCAATGATGTCACCGGCATATTCGGTCGCGGCTTCAACCATCGTTGCTTTTCCTTCCGTCATACATTTGGATCAAGTGGTATCACTATGCATTCCAACACCCGTGGTAGCAGCGCGTCGAGTGCCATAGACATCGAGAGTCGTGCACCAACCCCAACACCAACACCTAAGATTGTCCCTGTTGGACTCGAAACTGATTCGATAATAAACATGCGTGAGATGGATGCTTTTGTTTCTAAAGATCATGATATTCATTGGAAGAGTGGTGGTGATATTGCTCTTTCTCATGGTGGAATAATTAGTCGAAAGGTCAAAAGTGGTAATATTGGTGTAAAGAGCAATAACAATATTGTTGTTTCTCATGGTCTTCAAACTACAATGAGTAGACATAACAAAGCTTTGTCTTTTGGTGTAGAAATAAGGAAGCACCAAAAGTCGGTGGTTTGA

Protein sequence

MDKGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRGSSASSAIDIESRAPTPTPTPKIVPVGLETDSIINMREMDAFVSKDHDIHWKSGGDIALSHGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKHQKSVV

Homology

[Close]

BLAST of Lsi02G024290 vs. ExPASy TrEMBL
Match: A0A5A7U0F0 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001080 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.4e-45
Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFH L LV A  CCVKV ATF+DVTGI G G +HR +SFR+T GSSG+ M SNT G
Sbjct: 5   QGFKLFHILFLVLACLCCVKVGATFHDVTGILGLGISHR-YSFRNTIGSSGVGMFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ SS +D ES  PT  PTP I P GLET+ +I N  +  AFVSKDHDIHWKSG +IALS
Sbjct: 65  STTSSVVDTES--PTQAPTPDIAPAGLETNPAIKNSHDFMAFVSKDHDIHWKSGRNIALS 124

Query: 123 HGGIISRKVKSGNIGVKSNN-NIVVSHGLQTTMSRHNKALSFGVEIRKH 170
            GGI++     G IGVKSNN N  VSHGL+T++SR+NKALSFG+EI K+
Sbjct: 125 RGGIVT---NGGKIGVKSNNSNFAVSHGLETSLSRNNKALSFGIEIEKN 167

[Close]

BLAST of Lsi02G024290 vs. ExPASy TrEMBL
Match: A0A5D3D2N3 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001220 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 105/168 (62.50%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFHTL L+F+W CCVKV ATF+DVTGI G G NHR +SF H FGSSG+ M SNT G
Sbjct: 5   QGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHR-YSF-HAFGSSGVGMFSNTVG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S ASS +DIES  P   PT +IVP G E D +  N  + +AF+SKDHDIHWKSG  IA  
Sbjct: 65  SRASSVVDIES--PAQAPTSEIVPAGPEIDLATKNSHDFEAFISKDHDIHWKSGSSIA-P 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
           HGG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 HGGVVS---SGGKIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 163

[Close]

BLAST of Lsi02G024290 vs. ExPASy TrEMBL
Match: A0A5D3D3W7 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001240 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.5e-44
Identity = 106/168 (63.10%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           KG KLFHTLLLV    CCVKV ATF+DVTGI G G N R +SF +T GSSG+ M SNT G
Sbjct: 5   KGIKLFHTLLLVLVCLCCVKVGATFHDVTGILGLGIN-RHYSFHNTIGSSGVGMFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ SS +DIES  PT  PT +I P GLET+ +I N     AFVSKDHDIHWKSG +IALS
Sbjct: 65  STTSSVVDIES--PTQAPTAEIAPAGLETNPAIKNSHHFVAFVSKDHDIHWKSGSNIALS 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
            GG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 RGGVVS---SGGEIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 165

[Close]

BLAST of Lsi02G024290 vs. ExPASy TrEMBL
Match: A0A5A7TZJ9 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00120 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.5e-44
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFHTL L+F+W CCVKV ATF+DVTGI G G NHR +SF H FGSSG+ M SNT G
Sbjct: 5   QGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHR-YSF-HAFGSSGVGMFSNTVG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S ASS +DIE+  P   PT +IVP G E D +  N  + +AF+SKDHDIHWKSG  IA  
Sbjct: 65  SRASSVVDIET--PAQAPTSEIVPAGPEIDLATKNSHDFEAFISKDHDIHWKSGSSIA-P 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
           HGG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 HGGVVS---SGGKIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 163

[Close]

BLAST of Lsi02G024290 vs. ExPASy TrEMBL
Match: A0A0A0KB06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.5e-43
Identity = 102/168 (60.71%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GF LFHTL LV A  CCV V ATF+DVTGI G G +HR +SF +T GS G+ + SNT G
Sbjct: 5   QGFNLFHTLFLVLACLCCVNVGATFHDVTGILGLGIHHR-YSFHNTIGSGGVGLFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ASS +DIES  P   PT +I P GLETD +I N  + + F+SKDHDIHWKSG +IALS
Sbjct: 65  STASSVVDIES--PAQAPTSEIAPAGLETDPAINNSHDFEGFISKDHDIHWKSGSNIALS 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQT-TMSRHNKALSFGVEIRK 169
           HGG+IS     G IGVKS +N  VSHGLQT + SR+NKALS G+EI K
Sbjct: 125 HGGVIS---TGGKIGVKSYSNFAVSHGLQTSSSSRNNKALSSGIEIEK 166

[Close]

BLAST of Lsi02G024290 vs. NCBI nr
Match: KAA0048678.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18176.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-45
Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFH L LV A  CCVKV ATF+DVTGI G G +HR +SFR+T GSSG+ M SNT G
Sbjct: 5   QGFKLFHILFLVLACLCCVKVGATFHDVTGILGLGISHR-YSFRNTIGSSGVGMFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ SS +D ES  PT  PTP I P GLET+ +I N  +  AFVSKDHDIHWKSG +IALS
Sbjct: 65  STTSSVVDTES--PTQAPTPDIAPAGLETNPAIKNSHDFMAFVSKDHDIHWKSGRNIALS 124

Query: 123 HGGIISRKVKSGNIGVKSNN-NIVVSHGLQTTMSRHNKALSFGVEIRKH 170
            GGI++     G IGVKSNN N  VSHGL+T++SR+NKALSFG+EI K+
Sbjct: 125 RGGIVT---NGGKIGVKSNNSNFAVSHGLETSLSRNNKALSFGIEIEKN 167

[Close]

BLAST of Lsi02G024290 vs. NCBI nr
Match: TYK18187.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-44
Identity = 105/168 (62.50%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFHTL L+F+W CCVKV ATF+DVTGI G G NHR +SF H FGSSG+ M SNT G
Sbjct: 5   QGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHR-YSF-HAFGSSGVGMFSNTVG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S ASS +DIES  P   PT +IVP G E D +  N  + +AF+SKDHDIHWKSG  IA  
Sbjct: 65  SRASSVVDIES--PAQAPTSEIVPAGPEIDLATKNSHDFEAFISKDHDIHWKSGSSIA-P 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
           HGG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 HGGVVS---SGGKIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 163

[Close]

BLAST of Lsi02G024290 vs. NCBI nr
Match: KAA0046649.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 9.2e-44
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           +GFKLFHTL L+F+W CCVKV ATF+DVTGI G G NHR +SF H FGSSG+ M SNT G
Sbjct: 5   QGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHR-YSF-HAFGSSGVGMFSNTVG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S ASS +DIE+  P   PT +IVP G E D +  N  + +AF+SKDHDIHWKSG  IA  
Sbjct: 65  SRASSVVDIET--PAQAPTSEIVPAGPEIDLATKNSHDFEAFISKDHDIHWKSGSSIA-P 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
           HGG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 HGGVVS---SGGKIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 163

[Close]

BLAST of Lsi02G024290 vs. NCBI nr
Match: TYK18189.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 9.2e-44
Identity = 106/168 (63.10%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           KG KLFHTLLLV    CCVKV ATF+DVTGI G G N R +SF +T GSSG+ M SNT G
Sbjct: 5   KGIKLFHTLLLVLVCLCCVKVGATFHDVTGILGLGIN-RHYSFHNTIGSSGVGMFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ SS +DIES  PT  PT +I P GLET+ +I N     AFVSKDHDIHWKSG +IALS
Sbjct: 65  STTSSVVDIES--PTQAPTAEIAPAGLETNPAIKNSHHFVAFVSKDHDIHWKSGSNIALS 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
            GG++S     G IGVKSN+N  VSHGL+T+ SR+NKALSFG+EI K+
Sbjct: 125 RGGVVS---SGGEIGVKSNSNFAVSHGLETS-SRNNKALSFGIEIEKN 165

[Close]

BLAST of Lsi02G024290 vs. NCBI nr
Match: KAA0046651.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-42
Identity = 104/168 (61.90%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 3   KGFKLFHTLLLVFAWHCCVKVDATFNDVTGIFGRGFNHRCFSFRHTFGSSGITMHSNTRG 62
           KG KLFHTLLLV    CCVKV ATF+DVTGI G G N R +SF +T GSSG+ M SNT G
Sbjct: 5   KGIKLFHTLLLVLVCLCCVKVGATFHDVTGILGLGIN-RHYSFHNTIGSSGVGMFSNTGG 64

Query: 63  SSASSAIDIESRAPTPTPTPKIVPVGLETD-SIINMREMDAFVSKDHDIHWKSGGDIALS 122
           S+ SS +DIES  PT  PT +I P GLET+ +I N     AFVSKDHDIHWKSG +I LS
Sbjct: 65  STTSSVVDIES--PTQAPTAEIAPAGLETNPAIKNSHHFVAFVSKDHDIHWKSGSNIVLS 124

Query: 123 HGGIISRKVKSGNIGVKSNNNIVVSHGLQTTMSRHNKALSFGVEIRKH 170
            GG++S     G IGVKSN+N  VS GL+T+ SR+NKALSFG+EI K+
Sbjct: 125 RGGVVS---SGGEIGVKSNSNFAVSRGLETS-SRNNKALSFGIEIEKN 165

The following BLAST results are available for this feature:

BLAST of Lsi02G024290 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G024290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0F0	1.4e-45	63.31	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A5D3D2N3	2.0e-44	62.50	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A5D3D3W7	4.5e-44	63.10	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A5A7TZJ9	4.5e-44	61.90	Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4...	[more]
A0A0A0KB06	6.5e-43	60.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1	[more]

BLAST of Lsi02G024290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048678.1	2.9e-45	63.31	Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18176.1 Ankyrin repeat pro...	[more]
TYK18187.1	4.1e-44	62.50	Ankyrin repeat protein [Cucumis melo var. makuwa]	[more]
KAA0046649.1	9.2e-44	61.90	Ankyrin repeat protein [Cucumis melo var. makuwa]	[more]
TYK18189.1	9.2e-44	63.10	Ankyrin repeat protein [Cucumis melo var. makuwa]	[more]
KAA0046651.1	2.3e-42	61.90	Ankyrin repeat protein [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G024290 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G024290.1	Lsi02G024290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity