Lsi02G024160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G024160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Location	chr02: 30783697 .. 30789528 (+)
RNA-Seq Expression	Lsi02G024160
Synteny	Lsi02G024160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGTTCTCAAGTTCTTGAAAATGGCTTCTCTACATGCAGTTTTCTTGTCATTTTTGGTCATTATTGGTTCAGCTAGTAGTGATAACAATGGTGGTGGGTCTAATTATGATCTTATGACACCCAAATTGGGTAAGGAAGAAATGCTTCTCTCTACCATGATTGGTATTGAAGGAATTATTCTTTACAAATTTGGCTCAACAATTGCCCCTCTTCAAGGTAACTTAGTGTGTTTTTTGACATGGCTTTTTAATTTTTAAGTGATTATTTATTATGTGGATGAATGATATTAAAAGAGAATTAGTAGAGCCCTTCTTTGATTGAAATTCTAAAGAGGGGTTTTAAACCAATTAAAAGTATATGAATTTTTTTCTTGTGATTCAAATTACTTTATACCTACGCGAGTGTTTGGATCAACTTAGACGTACCACTAGATCAACCTATGCATGATAGTTGAGATGAACTCATCATTGAGTATTTTTGATTAATTAGTACTTAATGCATGAGAATAGATTCGGAGAATAAATGCACCTTGGAATCATTTTAAAATACAACGACAATATACATATTTTCACATTTGAAAATTAAGGTCCCAAGAACCCAATTTAGATTTTATTTTTCTATTTCTAAAAGTTATACTTTTCTTCATCATTTTTAAAAGAAAAATTATTTTAAATGACAAAACTGCTGAAAATATTTATAAATATAGTAAAATTTCACTATTTATCTGCGATAGACCGATAAACTACAAAAAGACACAGTAGTAGTCTATCATGGTCTATCACAGATAGACAGTAAATTTTATTATATTTGTAAATATTTTTTCCATTCATTTTCCTATATTTGAAAACAACCATTTTTAAAAATTATACAGTTTTAACATTTCATAATTAAGAAATAGTTTACCTTTTTAACCATTTTTTTTAAATATTATCATTTCTAGTAACTTTGAAAACGTTTTAGAAGTAGATAGCAAAAGAAAAAGCTCGTGAAAAAAAGTTAAATTTTTTAACTAAATACTAGTTTAAAAAAGCTAAACATAACTCGATTGACATGAATTTTTGTATTATTCAATCTCGAAGGTATAAGTAGGTTCAATTCTACCATGCTCACCTATCGTAAAATAATGGTTTTTAAAATTTAAGAGTGGTTATCAAACGAGATATATTTGTCGTAATTAAGAGGTGAGTTTAATTAGGGTTTGTGTTTATATGTAGGTGGTTTGGCAAGAATCACATGTAAAGCAGTGGATGAGTATGGGTATGAGGCAGCTTCTTACACATTTTTAAGTGATTCAAGTGATGAAAATGGGTACTTCTTAGCAACACTATCTCCTTCAGAGGTAGAAGACAAGAGGGAGTTGAAGGAATGCAAAGCTTTTTTAGAGGTCTCACCATTAGAGAACTGTCAATCTGCTTCTGATCTCAACAATGGAGTCTCTGGTGCTCTTCTCCATTCTTACAAACTTTTGGTCCATAATAAGATGAAACTCTTCTCTGTTGGCCCTTTCCTTTTCACTTGCCTAACTTAAAACAGAAGATATTATTCAACATATATATATGATAATTAATGATCCTATATATATGTTATTATTAGCTCAGCTGTAATTTGAGTACAAGTTTAGGAGAAAATTGTGAAGAGTGTAATGTTAAATTTGAGATGCTTTATGCAAATGGCCGTCTCCTTTATATTTGCCTAGCAATTAATCCTTTTAAGGCATATTCTTAATATTAACATGAATAACTTTGACAAGTTAATTCATTGGCTTTCAAATTTAGTATAGGGAATATAACTTATTAAATCGTTACCGATGGCAAAGTCTAAGGATTAATTTGTAACTTATTAAATCATTATAAATAGTAAAATATAGATATTGATATTAAACTTATTAAAATTTAGAGACTAAATTGTTACTAATTTAAGTATAAAGATTGAATCATTATTAGACTAAATTGTTAGTTTCATAAAATTTCAAGACCACCAATTTTTTTTTTCCTTAAGAATTAAGGAACTAAATAACGTATTGTGGTAATCAGAATCAAATTAACTATCTAACAAAAGAAAAAAATAGTTAAAATATGTAAGATGAAAAACTCTCTAAGCCTAATTATTTGACCTAATAAAATTATAGTCACCCTAGAAAAGAAGGAAAATAAAATCAATTATGATCTTAATTACACAGATGAGATTTATCAAATAGATCAGTGAAAATTTTAATAGGTGTTGCAATTTTTATCTTAAGTTATATCTCTTCTTATTCACCGAATAATTTTCACAAATAAATAATATTAAAATTTTCGTAAACACATTAATTTCAATAAACAAGATTTTGTACAAAAATAAGTAACCAATGCACAAATTAACTATAGAAATAACATTGTTAAAATTCATAATTTTTTCTTTAAAAAAAAATAGTTGTAATGTCATTTTTCTCTAAAATGTTAGTAGTTTTAAATTGCACATATGTTGATTTTTTTTTTCCATGATATTTAGAGTGAGAAATCATTATATGATAAACTTTGCAACTTTTTATTAAAAGTTTAGAATTAAAATTATAACACTTATTGAAATTTGAGATATAATTTCATCCAATATTGGGAAAATGAATACAACTCCACAATTTAGGGTCAAAATTGATTTTTTTCTCAGAAAAAAAAGGAAAAAAATAAAAATAAATCTAGAATTGACACAGCCGATTAGAGATAAATAACTGAAAAGAGAACTGAAAGAAAAAGATGTCGCTAAAATCCTTCCCTGGCTTAAGCCACTGGATAAAATTTTTCTGCAGAGCGTCACCAAAATTTCCACCATTTTCCGAACTCAGGTACTTTTTTTAATCTTCTACCCTTCTACTCGCCTCTGTGTTCTCTGTTCTTGTATAGTTCTCTCCATAATCTATTTTACGCATTTGAAGTTTCTTGCGATGCTAATCTGTAAATTGTATCACAAGCTGTTTGAAGAAAGGCCCAACTGAATTACTCAATTAACTTGTCCGTAGTTTAATCTGACCTAGTTTCTCTGCTGTTCTTGTAGGATTGGATTGTTTTCGCTCGACTTCATTAGCTGATTAGTTTATATAATTTGCAAAGACTGTATTATTTGTATCTAGGAAAATTCCCTTATCCAATTTCTATGTGCAGTATTTAAGATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTATTGTAATTGCAAATTAGTTCCCTATACAGCATTTCTATTTGTTTGCTTTCAGTCAACTAGAGCATACTATACTATACACTGAAATGCTAACCATTTTTGTTCTCTCAACAGTAATTTTAGTGAACAATTAAGTTTATTCTATTCTAAGTTTTACATAGGTTTTCTACTCACTTGCTGAACCTCCCTCCCATAGCCGATTGCTGGTTGGATGGTCACTCGATACTCATTTTTTCTGTATGTACCAAAAAAAAAAACAAAAAGATATATTATTATCCACATCCTTTTTCCTTGTATAATTTGTGCTTTAAAAAAGACTATATTATAAAGAAATGGTTACCCCTCAAATTTGTCATATGTTTAAGAAAAACTCTTTTTCTTTCAAAAGTTGCAATATTACCCTTGACTTTTCATAAACATTTCAAAACTATCATTGGAGTAAAAATCCTTTAAAATGTTGGATAGAAGTTTGAGACCTAGAATAATGTGGTAGTGACCTAGAACGGAAATATGGATTGGCACCAGTTCTAGGTCACTGCCACACTATTTCAAGTCTCTAACTTTTATTGAAAGTTTTAAAAGATGCTTACTTCAAGAGTAGTCTTGAAACCTTTAGGAAAGGTCAAGATCAATATTGTAACTTTTGAATGGATGGAGGTATTTTTGAAACAAAGGACAAGGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATTTAACCTACAAAAAAAGTAACCATCTACCTCTTCAAGCTACTCAATGTCTGTGTTAGATTGCCTTCTAATTGATTTCAACAGCTTTGACTTATCAATTACAGATAAGCCTAGTTCTTTTGGTTGTTCTACATCAACTGGGATGAAGTATTTGCTTTCTCTGTTTTCTCCTCTTATGCCTCAAAATCAATCTACTTCTTTGTTTATGATGACTGTATGCTCACAAATTTGGTCTGTACCATCTATGCTGTTATCAATGAGGTTTCGTGATGTGCTAATCACTTTGTGTTGCAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAAGACTTGAATGCAAGAACATGTGTTCCTTTTGATCAAACCCTGTCTTTCTAATGTGTCTTATCTTGGCTGAGCTCTTTTACAACCATCATTTTGTAATCTTATTCCATCTGCATTTTAACCTTTGTTACGTTAGAGCACCTGCAATGCAATACTGAAAAAAAAATGTCTGTTGTTACTCTGCTCATTTGCCTGAACCCCCTAAATCTCCAGTTTCTAATTGCAGTTTCTTAATTTTGATTG

mRNA sequence

ATGGCAGCTGTTCTCAAGTTCTTGAAAATGGCTTCTCTACATGCAGTTTTCTTGTCATTTTTGGTCATTATTGGTTCAGCTAGTAGTGATAACAATGGTGGTGGGTCTAATTATGATCTTATGACACCCAAATTGGGTAAGGAAGAAATGCTTCTCTCTACCATGATTGGTATTGAAGGAATTATTCTTTACAAATTTGGCTCAACAATTGCCCCTCTTCAAGGTGGTTTGGCAAGAATCACATGTAAAGCAGTGGATGAGTATGGGTATGAGGCAGCTTCTTACACATTTTTAAGTGATTCAAGTGATGAAAATGGGTACTTCTTAGCAACACTATCTCCTTCAGAGGTAGAAGACAAGAGGGAGTTGAAGGAATGCAAAGCTTTTTTAGAGGTCTCACCATTAGAGAACTGTCAATCTGCTTCTGATCTCAACAATGGAGTCTCTGTATTTAAGATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAAGACTTGAATGCAAGAACATGTGTTCCTTTTGATCAAACCCTGTCTTTCTAATGTGTCTTATCTTGGCTGAGCTCTTTTACAACCATCATTTTGTAATCTTATTCCATCTGCATTTTAACCTTTGTTACGTTAGAGCACCTGCAATGCAATACTGAAAAAAAAATGTCTGTTGTTACTCTGCTCATTTGCCTGAACCCCCTAAATCTCCAGTTTCTAATTGCAGTTTCTTAATTTTGATTG

Coding sequence (CDS)

ATGGCAGCTGTTCTCAAGTTCTTGAAAATGGCTTCTCTACATGCAGTTTTCTTGTCATTTTTGGTCATTATTGGTTCAGCTAGTAGTGATAACAATGGTGGTGGGTCTAATTATGATCTTATGACACCCAAATTGGGTAAGGAAGAAATGCTTCTCTCTACCATGATTGGTATTGAAGGAATTATTCTTTACAAATTTGGCTCAACAATTGCCCCTCTTCAAGGTGGTTTGGCAAGAATCACATGTAAAGCAGTGGATGAGTATGGGTATGAGGCAGCTTCTTACACATTTTTAAGTGATTCAAGTGATGAAAATGGGTACTTCTTAGCAACACTATCTCCTTCAGAGGTAGAAGACAAGAGGGAGTTGAAGGAATGCAAAGCTTTTTTAGAGGTCTCACCATTAGAGAACTGTCAATCTGCTTCTGATCTCAACAATGGAGTCTCTGTATTTAAGATGTCAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGATTTCTATTTGCAATCCAAAGGGAATGTTTCTTTCAATTCGTATTTCCGAGTTCCATGGAAATTTATGAGAAATATTCAGCCAAGCTTGGGTAACCCATGTATTATGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTTTTTGAAGAAAATTCAATAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGATGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTACGCGTAACGAAGGCTGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAGACTGTCATCACTCTCAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATAGGAACCATTAGCGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTGGTTGATTTGGATGATCAACTCTATTTTCCTCCTGTGGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCGATATGTGATCCGGGATGCAAAGGCATGTGTCTGAATTGTGGCATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCGTAA

Protein sequence

MAAVLKFLKMASLHAVFLSFLVIIGSASSDNNGGGSNYDLMTPKLGKEEMLLSTMIGIEGIILYKFGSTIAPLQGGLARITCKAVDEYGYEAASYTFLSDSSDENGYFLATLSPSEVEDKRELKECKAFLEVSPLENCQSASDLNNGVSVFKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQKNS

Homology

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BLAST of Lsi02G024160 vs. ExPASy Swiss-Prot
Match: Q9LT27 (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19810 PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 2.6e-83
Identity = 154/247 (62.35%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 223 QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDV 282
           +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDV
Sbjct: 73  ESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDV 132

Query: 283 SKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAP 342
           SK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRLDGIV+TVITL C RC E   
Sbjct: 133 SKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTG 192

Query: 343 ECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVE 402
           E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  
Sbjct: 193 ESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEGEDDDDNDDSWIDWEDKLHFPPEV 252

Query: 403 KEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGN 462
           KEIDISK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGN
Sbjct: 253 KEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREE-KDKGYGPLGN 312

Query: 463 LKRQMQK 470
           L+ QMQ+
Sbjct: 313 LREQMQQ 315

[Close]

BLAST of Lsi02G024160 vs. ExPASy Swiss-Prot
Match: A0A1D6HQ92 (Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Zea mays OX=4577 GN=GRMZM2G433025 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.6e-55
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 236 VDQEGDIEEMG--SPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR 295
           V+ E D  + G  SPW+GAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL 
Sbjct: 63  VEPEPDSIDDGLPSPWEGAVVYRRDAAVQHLEYASTLERLGLGDLSSPDSRARAADLGLA 122

Query: 296 --VTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSI 355
                +    P  TPV +SVDVTR+  RLRLDGIV+TVITL C+RC EPAP+ +F+NFS+
Sbjct: 123 GGTLDSTGAQP-RTPVLVSVDVTRRRGRLRLDGIVRTVITLGCFRCAEPAPQGIFANFSL 182

Query: 356 ILSEEPI-EEPDVINIGTISGQDMFK-------TYDGNSDEDDEELVDLDDQLYFPPVEK 415
           +L+E+P+ EEPD   +GTI  +D  K         DG+ D      +D DD+L+FP  +K
Sbjct: 183 LLTEDPVEEEPD---LGTIFQEDDDKGGASLACAMDGDQD------IDWDDRLHFPAADK 242

Query: 416 EIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLN-TGSCNCSKQAVK 454
           EIDISK+IRD++HLEIT++A+C+P CKG+CL CG NLN T SC C  + V+
Sbjct: 243 EIDISKHIRDMIHLEITLDAVCNPNCKGLCLTCGANLNTTSSCTCKPRNVQ 283

[Close]

BLAST of Lsi02G024160 vs. ExPASy Swiss-Prot
Match: O81417 (Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN OS=Arabidopsis thaliana OX=3702 GN=SRPP PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-15
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 56  IGIEGIILYKFGSTIAPLQGGLARITCKAVDEYGYEAASYTFLSDSSDENGYFLATLSPS 115
           I +EGII  K G    P+QG  ARI C  VD YG E    + LS  +D  GYF+AT+ PS
Sbjct: 40  IAVEGIIKCKSGGKTYPIQGATARIACVKVDAYGNELVPISILSSKTDAKGYFIATIFPS 99

Query: 116 EVEDKRELKECKAFLEVSPLENCQSASDLNNGV 149
           ++   R + +CK +L  SPL +C   +D+N GV
Sbjct: 100 QLRAGRTVTKCKTYLYKSPLADCDFPTDVNKGV 132

[Close]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL
Match: A0A5A7VN29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001640 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 1.1e-166
Identity = 290/321 (90.34%), Postives = 307/321 (95.64%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 68  FKMLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 127

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 128 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTL 187

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 188 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 247

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 248 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 307

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 308 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 367

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 368 AVKKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL
Match: A0A1S3BR50 (uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 4.3e-166
Identity = 289/321 (90.03%), Postives = 306/321 (95.33%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 51  FKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 110

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 111 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTL 170

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 171 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 230

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 231 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 290

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 291 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 350

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 351 AVKKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL
Match: A0A1S3BSU8 (uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492797 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 4.3e-166
Identity = 289/321 (90.03%), Postives = 306/321 (95.33%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 68  FKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 127

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 128 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTL 187

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 188 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 247

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 248 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 307

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 308 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 367

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 368 AVKKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL
Match: A0A5D3D2J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00780 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 3.6e-165
Identity = 288/321 (89.72%), Postives = 304/321 (94.70%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +
Sbjct: 51  FKMLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSLLRAPWRFMRNIQPSLGDPCIKM 110

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 111 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTL 170

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 171 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 230

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 231 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 290

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 291 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 350

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 351 AVKKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL
Match: A0A0A0KAY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 1.2e-160
Identity = 279/319 (87.46%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 153 MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 212
           M ATFPTSSVVSSSHSNEFI  FY +SKG VSF+S+FRVPW+ +RNIQPSLG+PCI +KS
Sbjct: 1   MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKS 60

Query: 213 TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 272
           T+IKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GA+IYKRNSSVSHVEYCTTLER
Sbjct: 61  TAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLER 120

Query: 273 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 332
           LGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK K+LRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITL 180

Query: 333 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 392
           NCY CCEPAPEC+FSNFSIILSEEPIEEPDVIN+G ISG+DMFKT +GNSDEDDEEL+DL
Sbjct: 181 NCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDL 240

Query: 393 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 452
           DDQLYFPP+ KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNTGSC CSKQAV
Sbjct: 241 DDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV 300

Query: 453 KKNDFGPLGNLKRQMQKNS 472
           KKNDFGPLG+LKR+MQ NS
Sbjct: 301 KKNDFGPLGDLKRRMQNNS 319

[Close]

BLAST of Lsi02G024160 vs. NCBI nr
Match: XP_038897008.1 (large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 597.4 bits (1539), Expect = 1.0e-166
Identity = 296/319 (92.79%), Postives = 308/319 (96.55%), Query Frame = 0


Query: 153 MSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIMLKS 212
           MSATFPTSSVVSSSHSNEFIK FYL+SKGNVSF+S+ RVPWKFMRNIQPSLG+ CIMLKS
Sbjct: 1   MSATFPTSSVVSSSHSNEFIKVFYLKSKGNVSFDSHCRVPWKFMRNIQPSLGDSCIMLKS 60

Query: 213 TSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLER 272
           TSIKCVKPTYQSLFE+NSIITDW D +GDIEEMGSPW+GAVIYKRNSSVSHVEYCTTLER
Sbjct: 61  TSIKCVKPTYQSLFEDNSIITDWED-KGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLER 120

Query: 273 LGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL 332
           LGLEKLSTDVSKSRAS MGLRV K VKDYPFGTPVQISVDVTRKEK+LRLDGIVKTVITL
Sbjct: 121 LGLEKLSTDVSKSRASAMGLRVRKVVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITL 180

Query: 333 NCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDL 392
           NCYRCCE APEC+FSNFSIILSEEPIEEPDVIN+G ISGQDMFKTYDGNSDEDDEELVDL
Sbjct: 181 NCYRCCELAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTYDGNSDEDDEELVDL 240

Query: 393 DDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 452
           DDQLYFP +EKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
Sbjct: 241 DDQLYFPLIEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV 300

Query: 453 KKNDFGPLGNLKRQMQKNS 472
           KKNDFGPLGNLK+QMQKNS
Sbjct: 301 KKNDFGPLGNLKKQMQKNS 318

[Close]

BLAST of Lsi02G024160 vs. NCBI nr
Match: KAA0067976.1 (uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa])

HSP 1 Score: 596.3 bits (1536), Expect = 2.3e-166
Identity = 290/321 (90.34%), Postives = 307/321 (95.64%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 68  FKMLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 127

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 128 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTL 187

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 188 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 247

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 248 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 307

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 308 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 367

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 368 AVKKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of Lsi02G024160 vs. NCBI nr
Match: XP_008451552.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo])

HSP 1 Score: 594.3 bits (1531), Expect = 8.9e-166
Identity = 289/321 (90.03%), Postives = 306/321 (95.33%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 51  FKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 110

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 111 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTL 170

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 171 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 230

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 231 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 290

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 291 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 350

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 351 AVKKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of Lsi02G024160 vs. NCBI nr
Match: XP_008451550.1 (PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo])

HSP 1 Score: 594.3 bits (1531), Expect = 8.9e-166
Identity = 289/321 (90.03%), Postives = 306/321 (95.33%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS+FRVPW+FMRNIQPSLG+PCI +
Sbjct: 68  FKMLATFPTSSVVSSSHSKEFINVFYFESKGNVSFNSHFRVPWRFMRNIQPSLGDPCIKM 127

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEM SPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 128 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMSSPWEGAVIYKRNSSVSHVEYCTTL 187

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 188 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 247

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 248 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 307

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 308 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 367

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 368 AVKKNDFGPLGNLKRRMQNNS 388

[Close]

BLAST of Lsi02G024160 vs. NCBI nr
Match: TYK18147.1 (uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 591.3 bits (1523), Expect = 7.5e-165
Identity = 288/321 (89.72%), Postives = 304/321 (94.70%), Query Frame = 0


Query: 151 FKMSATFPTSSVVSSSHSNEFIKDFYLQSKGNVSFNSYFRVPWKFMRNIQPSLGNPCIML 210
           FKM ATFPTSSVVSSSHS EFI  FY +SKGNVSFNS  R PW+FMRNIQPSLG+PCI +
Sbjct: 51  FKMLATFPTSSVVSSSHSKEFINVFYFKSKGNVSFNSLLRAPWRFMRNIQPSLGDPCIKM 110

Query: 211 KSTSIKCVKPTYQSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTL 270
           KSTSIKCVKPTYQSLFE+NSIITDW DQEGDIEEMGSPW+GAVIYKRNSSVSHVEYCTTL
Sbjct: 111 KSTSIKCVKPTYQSLFEDNSIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTL 170

Query: 271 ERLGLEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVI 330
           ERLGLEKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQISVDVTRK+K+LRLDGIVKTVI
Sbjct: 171 ERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVI 230

Query: 331 TLNCYRCCEPAPECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELV 390
           TLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVIN+G ISGQD+FKT +GNSDEDDEE V
Sbjct: 231 TLNCYRCCEPAPECIFSNFSILLSEEPIEEPDVINMGIISGQDIFKTDNGNSDEDDEESV 290

Query: 391 DLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQ 450
           DLDDQLYFPPV+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQ
Sbjct: 291 DLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICNPGCKGMCLNCGINLNTGSCNCSKQ 350

Query: 451 AVKKNDFGPLGNLKRQMQKNS 472
           AVKKNDFGPLGNLKR+MQ NS
Sbjct: 351 AVKKNDFGPLGNLKRRMQNNS 371

[Close]

BLAST of Lsi02G024160 vs. TAIR 10
Match: AT3G19810.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 310.8 bits (795), Expect = 1.8e-84
Identity = 154/247 (62.35%), Postives = 195/247 (78.95%), Query Frame = 0


Query: 223 QSLFEENSIITDWVDQEGDIEEMGSPWDGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDV 282
           +S  E ++I  DW DQE +IE+ GSPW+G+V+Y+RN+SV+HVEYCTTLERLGL +LSTDV
Sbjct: 73  ESFTETSTIDMDWEDQE-EIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDV 132

Query: 283 SKSRASKMGLRVTKAVKDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAP 342
           SK RAS MGLRVTK VKDYP GTPVQ+SVDV RK+K+LRLDGIV+TVITL C RC E   
Sbjct: 133 SKKRASAMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTG 192

Query: 343 ECVFSNFSIILSEEPIEEPDVINIGTISGQDMFKTYDGNSDEDDEELVDLDDQLYFPPVE 402
           E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+  +D +D+L+FPP  
Sbjct: 193 ESIFSNFSLLLTEEPVEEPDVIDLGFTFGND--KEEGEDDDDNDDSWIDWEDKLHFPPEV 252

Query: 403 KEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGN 462
           KEIDISK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGN
Sbjct: 253 KEIDISKHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREE-KDKGYGPLGN 312

Query: 463 LKRQMQK 470
           L+ QMQ+
Sbjct: 313 LREQMQQ 315

[Close]

BLAST of Lsi02G024160 vs. TAIR 10
Match: AT2G47540.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-25
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 48  EEMLLSTMIGIEGIILYKFGSTIAPLQGGLARITCKAVDEYGYEAASYTFLSDSSDENGY 107
           E  LLS+MIG++G+I  K GS + P+QG +AR+TC+  DEYGYEA   T LS ++D  GY
Sbjct: 29  EGELLSSMIGVQGLIYCKRGSKLTPIQGAVARVTCERTDEYGYEAEDVTVLSQATDAKGY 88

Query: 108 FLATLSPSEVEDKR---ELKECKAFLEVSPLENCQSASDLNNGVS 150
           FLATLS SEV+D +   ++KEC+AFLE+SP + C   +++N G+S
Sbjct: 89  FLATLSSSEVKDYKKVIKIKECRAFLELSPSDTCSFPTEINRGIS 133

[Close]

BLAST of Lsi02G024160 vs. TAIR 10
Match: AT4G02270.1 (root hair specific 13 )

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-16
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 56  IGIEGIILYKFGSTIAPLQGGLARITCKAVDEYGYEAASYTFLSDSSDENGYFLATLSPS 115
           I +EGII  K G    P+QG  ARI C  VD YG E    + LS  +D  GYF+AT+ PS
Sbjct: 40  IAVEGIIKCKSGGKTYPIQGATARIACVKVDAYGNELVPISILSSKTDAKGYFIATIFPS 99

Query: 116 EVEDKRELKECKAFLEVSPLENCQSASDLNNGV 149
           ++   R + +CK +L  SPL +C   +D+N GV
Sbjct: 100 QLRAGRTVTKCKTYLYKSPLADCDFPTDVNKGV 132

The following BLAST results are available for this feature:

BLAST of Lsi02G024160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT27	2.6e-83	62.35	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]
A0A1D6HQ92	8.6e-55	51.08	Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic O...	[more]
O81417	5.1e-15	44.09	Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi02G024160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VN29	1.1e-166	90.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BR50	4.3e-166	90.03	uncharacterized protein LOC103492797 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BSU8	4.3e-166	90.03	uncharacterized protein LOC103492797 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D2J4	3.6e-165	89.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAY7	1.2e-160	87.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398180 PE=4 SV=1	[more]

BLAST of Lsi02G024160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897008.1	1.0e-166	92.79	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-l...	[more]
KAA0067976.1	2.3e-166	90.34	uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]	[more]
XP_008451552.1	8.9e-166	90.03	PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]	[more]
XP_008451550.1	8.9e-166	90.03	PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]	[more]
TYK18147.1	7.5e-165	89.72	uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G024160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19810.1	1.8e-84	62.35	Protein of unknown function (DUF177)	[more]
AT2G47540.1	1.5e-25	52.38	Pollen Ole e 1 allergen and extensin family protein	[more]
AT4G02270.1	3.6e-16	44.09	root hair specific 13	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_1	coord: 71..148 e-value: 7.0E-12 score: 45.6
None	No IPR available	PANTHER	PTHR34374	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC	coord: 208..469
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 322..464 e-value: 1.6E-27 score: 96.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G024160.1	Lsi02G024160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast