Lsi02G023970 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTCTCTTCTAAAAAAAATTTCGTCCATCTCTGACGCAAAAGCCGTGATTCTTGAAGCTTCGTTTCAATGGCGACTGCAGATAAGCAAGTGATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACTTTAGACCATCTCATCGTTCCAATCTCTCCGGTTAACTCTCCGTTCAAGCTCATCGTTGTTCACGCCAAACCTTCACCTTCCTCCGCCGTCAGTCTCGCCGGACCTGGTAATTGATTTCATTTTCTTCTTGATTTCTGGTTGATTTATCATTAGTCTACTGAGGATTGGTAAATAAACCGGTGGTAACGAGTGTCGATTGCAGGAGCGGCTGAGGTTCTGCCCTATGTGGATTCAGATTTGAAGAAGATTGCTGCGCGAGTTATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTAATCCTCTTGATTCTTAGCAATTAATAACCCGATTTACTTCTTGAGCGTTCTAAGTTTTGTTTATTTAAAACGATTTAGTATTTTATTGCGCTGTTGCTGGTAACATTTGTGGATTTAGGATCGCTTTCTTTTCCAGAAATGAGCTGATTGAAATGAAAATTATTTGGAAAGAAAATTTGTGCACTGACCATAAAACCTACAAAAATTGTTTAATAAAAATTATTTTCAATTGAAATAGGAATAGGAAGTATTAAGAATCTAAGATTGTCGTTATATTGTTCATTCATGCTATAATTGTAGGACTGTAAAAAGGTAGAAAGAAAAGGAATTAATATAACAAAGAATAAATAGAAGTAAAAAGTGATTGTTACGTAATAAAATTGATTAAGAATGAGATTCCTTATCCATGATTAAACATGTCATGCTCTAGAAACATCCAGGACAACTACACAACTATGATTAGTATTTTACTGTTGATATGATTGTTTTGATTAAAATTCTAATGGATTTACATATTTGCATTCATGCTATCATAGTAGGACTGTAAAAGGTAGAAAGAAAAGAAATTATGTAATAAAGTGTAAATAAAAGTAAAAAGTGATTGTTACGTAATAAAATTGATTAAGAATGCGATTCCTTTATCCATGATTAAACATATCATGCTCTAGAAACATCCAGGACAACTATACAACTATGATTAATATTTACTGTTGATATGTTTATATTGCTTCTTATTATTTTTCTTTTACAAATTCTTATGGATCTACATATTTATTGACCAAAACATTAATACAGCAACGGAAAGGTAGAAATTAAGGCCCTAAGGCCAACTGGGTGTAGCTAGTTTGGTTCTTCAATTTATGTGTCCGACTTTTTCAGTCTCCAGACCTCCATGGTCTAATGGTACAGAAGGATGGAACTACAGTTTTGTAATAATACCTTTAACTAAAAAGTGGAAAATGTTTTTTTTCATATAATTTGTAATGATACCCTTAACTAAAAAAAGTGGGATTTTTTCTTCATCAAATTTGTGTATGATATAAAATGGTAAAGATGAACTGGATTCTGATTGGTGCCTAAAGCAACTTTGGAGAAGGGCATCCTTTTTAGAAAAGAAACACAAGTACGGAGAACTTTTATCCAATCTATATTATTGAAGATTTTTGTTCTGAAATTCTGTAATATATGTGATAATATCCAGGTGCATGATGCTGTGTTGGAGGTGATAGAAGGAGATGCCAGGAATGTACTTTGTGAGGCTGTAGAAAGGCACCATGCTTCTATTCTGGTTGTTGGAAGCCATGGCTATGGAGCTATAAAGAGGTACTTCTCTATATATCAATACGTATTTTTCGAGTTCATGAAATCAGAAATGTGGATATAATTGGCTAAAACTTAAAGCTTGGAAAAGCATGACAAAAAACCCAATTGATGTTGTAATCTGAGATGTTAGAAGGTGGGAAGAGTTTCAGATCCTCTTTATTTCAAAGTTTTCTTAAACAACTTGAAAAGCTGATTAGGAAACAAAGAAAACAAGTACTGAAAACAGAAAGTCAAAAGTTTAAATCATTATCAAGGGAGTTTTCATTAATTAAGCTCAATCTGATTTTTTTGATGGCAGGGCTGTTTTAGGCAGTGCTAGTGATTATTGTGCTCATCATGCTCACTGCACCGTGATGATTGTAAAGAAGCCTAAAACCAAGCACTAG GTCTCTTCTAAAAAAAATTTCGTCCATCTCTGACGCAAAAGCCGTGATTCTTGAAGCTTCGTTTCAATGGCGACTGCAGATAAGCAAGTGATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACTTTAGACCATCTCATCGTTCCAATCTCTCCGGTTAACTCTCCGTTCAAGCTCATCGTTGTTCACGCCAAACCTTCACCTTCCTCCGCCGTCAGTCTCGCCGGACCTGGAGCGGCTGAGGTTCTGCCCTATGTGGATTCAGATTTGAAGAAGATTGCTGCGCGAGTTATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTGCATGATGCTGTGTTGGAGGTGATAGAAGGAGATGCCAGGAATGTACTTTGTGAGGCTGTAGAAAGGCACCATGCTTCTATTCTGGTTGTTGGAAGCCATGGCTATGGAGCTATAAAGAGGGCTGTTTTAGGCAGTGCTAGTGATTATTGTGCTCATCATGCTCACTGCACCGTGATGATTGTAAAGAAGCCTAAAACCAAGCACTAG ATGGCGACTGCAGATAAGCAAGTGATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACTTTAGACCATCTCATCGTTCCAATCTCTCCGGTTAACTCTCCGTTCAAGCTCATCGTTGTTCACGCCAAACCTTCACCTTCCTCCGCCGTCAGTCTCGCCGGACCTGGAGCGGCTGAGGTTCTGCCCTATGTGGATTCAGATTTGAAGAAGATTGCTGCGCGAGTTATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTGCATGATGCTGTGTTGGAGGTGATAGAAGGAGATGCCAGGAATGTACTTTGTGAGGCTGTAGAAAGGCACCATGCTTCTATTCTGGTTGTTGGAAGCCATGGCTATGGAGCTATAAAGAGGGCTGTTTTAGGCAGTGCTAGTGATTATTGTGCTCATCATGCTCACTGCACCGTGATGATTGTAAAGAAGCCTAAAACCAAGCACTAG MATADKQVMVVGIDDSAHSLYALEWTLDHLIVPISPVNSPFKLIVVHAKPSPSSAVSLAGPGAAEVLPYVDSDLKKIAARVIEKAKEICLARSVHDAVLEVIEGDARNVLCEAVERHHASILVVGSHGYGAIKRAVLGSASDYCAHHAHCTVMIVKKPKTKH Homology
BLAST of Lsi02G023970 vs. ExPASy Swiss-Prot
Match: Q8L4N1 (Universal stress protein PHOS34 OS=Arabidopsis thaliana OX=3702 GN=PHOS34 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 5.8e-11 Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy Swiss-Prot
Match: Q8VYN9 (Universal stress protein PHOS32 OS=Arabidopsis thaliana OX=3702 GN=PHOS32 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08 Identity = 49/166 (29.52%), Postives = 75/166 (45.18%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy Swiss-Prot
Match: Q8LGG8 (Universal stress protein A-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g01520 PE=1 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06 Identity = 40/144 (27.78%), Postives = 67/144 (46.53%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy Swiss-Prot
Match: P72745 (Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1101 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06 Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy Swiss-Prot
Match: Q57951 (Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0531 PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05 Identity = 33/107 (30.84%), Postives = 58/107 (54.21%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy TrEMBL
Match: A0A1S3BRU9 (universal stress protein A-like protein OS=Cucumis melo OX=3656 GN=LOC103492814 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 3.6e-80 Identity = 153/162 (94.44%), Postives = 158/162 (97.53%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy TrEMBL
Match: A0A0A0K626 (Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G396480 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 8.9e-79 Identity = 150/162 (92.59%), Postives = 157/162 (96.91%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy TrEMBL
Match: A0A5A7VJK7 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001870 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 3.5e-75 Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy TrEMBL
Match: A0A5D3D3W1 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00590 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 3.5e-75 Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Lsi02G023970 vs. ExPASy TrEMBL
Match: A0A6J1D1G2 (universal stress protein PHOS34-like OS=Momordica charantia OX=3673 GN=LOC111016397 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75 Identity = 145/162 (89.51%), Postives = 151/162 (93.21%), Query Frame = 0
BLAST of Lsi02G023970 vs. NCBI nr
Match: XP_008451574.1 (PREDICTED: universal stress protein A-like protein [Cucumis melo]) HSP 1 Score: 307.4 bits (786), Expect = 7.4e-80 Identity = 153/162 (94.44%), Postives = 158/162 (97.53%), Query Frame = 0
BLAST of Lsi02G023970 vs. NCBI nr
Match: XP_004136030.1 (universal stress protein PHOS34 [Cucumis sativus] >KGN44933.1 hypothetical protein Csa_015987 [Cucumis sativus]) HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78 Identity = 150/162 (92.59%), Postives = 157/162 (96.91%), Query Frame = 0
BLAST of Lsi02G023970 vs. NCBI nr
Match: XP_038899903.1 (universal stress protein PHOS34-like [Benincasa hispida]) HSP 1 Score: 297.7 bits (761), Expect = 5.9e-77 Identity = 147/162 (90.74%), Postives = 156/162 (96.30%), Query Frame = 0
BLAST of Lsi02G023970 vs. NCBI nr
Match: KAA0067998.1 (universal stress protein A-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 290.8 bits (743), Expect = 7.2e-75 Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Lsi02G023970 vs. NCBI nr
Match: TYK18129.1 (universal stress protein A-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 290.8 bits (743), Expect = 7.2e-75 Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Lsi02G023970 vs. TAIR 10
Match: AT2G47710.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 241.9 bits (616), Expect = 3.6e-64 Identity = 121/162 (74.69%), Postives = 135/162 (83.33%), Query Frame = 0
BLAST of Lsi02G023970 vs. TAIR 10
Match: AT3G11930.4 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 121.7 bits (304), Expect = 5.4e-28 Identity = 69/164 (42.07%), Postives = 97/164 (59.15%), Query Frame = 0
BLAST of Lsi02G023970 vs. TAIR 10
Match: AT5G49050.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT2G47710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 120.2 bits (300), Expect = 1.6e-27 Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of Lsi02G023970 vs. TAIR 10
Match: AT3G11930.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27 Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 0
BLAST of Lsi02G023970 vs. TAIR 10
Match: AT3G11930.2 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 119.0 bits (297), Expect = 3.5e-27 Identity = 69/164 (42.07%), Postives = 98/164 (59.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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