Lsi02G023840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	desiccation-related protein PCC13-62-like
Location	chr02: 30523384 .. 30524650 (+)
RNA-Seq Expression	Lsi02G023840
Synteny	Lsi02G023840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGGTGCTCAAAAGGCTAATTTAGATCATGTCGTTAGTAACATCATTAAAGAATTTGGATATGAAGAGATGGGACAACTAAAGTAAATCATACATAAATCTATGTGTTCATTCAATACTGTTTTACGTTTTTCTGTTTATCTTTATTTGTAGATTTCTTAATTAACTTATATATTTGGTTTTATAAAGACCAATATTATTTCTTAGTTTTTTTTTTTTTTTTTTTGAATTTCAGAGTTGTAATTAAGGCAGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGGTAAAGGACAATGAGTAACGATTTTGTTTTTAGTTTCTCATCATTTTTATACTATGCTTTTCACTCCTGTGCTCAGCCTATTCAATTGTTTGATTAGAGATGGATTACTCTAAGTTTAGTGTTTAAATTTAAATTTAAAGTTTAGTTGCATGCAGTAAATAATAACATTTTCTTTGCAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

mRNA sequence

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Coding sequence (CDS)

ATGAGGATGAAAGTTGCATCATTCTTTTGGACATGGTTTCTTTTTGTGGTTTACTCGAGTCGAGTTGTAGTATGTAATAATATCATCGATCAATGTCAATCAATGGTAGCACCTGACGTTGAAATTTTTCGATTTGCTTCGAATTTTGAGTACCTTGAAGGAGAGTTCTACTTGAATAGTGCCCTTGGAAGAGGGATTGACTCCATTAATCCAAGTTTGGCATTTGGAGGACCACCTCCTATTGCTGGTGGAAGTGGTATTAAAAGGCCATTGTTGAATCTAAGTAAAGAAGTATTTTCAGATATATTTGATAAAGCAGTTGGGTTCAAGCTGGAACCAAGATTTGATCCTTATGCCAATTCCACCAATTTTCTACTTGCTGCCAATATGCTCCCTTACACTGGACTTGTTGGCCTTGTTGGAGCAACCCCTTTGTTTTTCTTTCTCCAATCTCGCAAGCTAGCGGCCTCGCTGCTCGGTGCAGAGTCTGGGCAAAATGCGGTTATACGAACGTTGTTGTACCAGAGGGCCAACGAGATTGTGGTTCCATATAACCTAACGGTGGCAGAGTTCACCAACCTCACCTCGACGCTGGCGAACCAGCTTGGGAAATGCGGGCTCAAAGACGAAGGGATTATTGTCCCTCAGTCGCTCGGGGCGGAGAATCAAACCGAGAGCAACGTTCTTGCGACCAACGTTAACTCCGTTTCGTATTCTCGAACAGTACAAGAAATCTTACGCATACTGTATGCAAGTGGTAGTGAAAGTAAAGCTGGTGCGTTTTTTCCAGAGGGTGCTAATGGTTTGATTGCAAGAAGCTTCCTTGGACCCAATATATGA

Protein sequence

MRMKVASFFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGANGLIARSFLGPNI

Homology

[Close]

BLAST of Lsi02G023840 vs. ExPASy Swiss-Prot
Match: P22242 (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-48
Identity = 111/260 (42.69%), Postives = 142/260 (54.62%), Query Frame = 0


Query: 39  DVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI----------------- 98
           DV +  F  N E LE EF+  +A G+GID + P LA GGP PI                 
Sbjct: 39  DVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQ 98

Query: 99  -------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAA 158
                        +   G  RPLL+LS + F+ + D A G  L+P FDPYAN  N+LLA 
Sbjct: 99  FAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLAC 158

Query: 159 NMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTV 218
            ++PY GL G VGA P      SRKL A LL  E+GQ+A+IR LLY+RA + V PY +TV
Sbjct: 159 YVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITV 218

Query: 219 AEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRI 269
           AEFTN  S L N+LG  G+KD G+IV   LGAE +   NVLA + NS+++ RT +  L  
Sbjct: 219 AEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGS 278

[Close]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL
Match: A0A0A0K965 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396330 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 6.6e-122
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 0


Query: 1   MRMKVAS-FFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

[Close]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL
Match: A0A1S3BT08 (desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC103492834 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.6e-106
Identity = 207/278 (74.46%), Postives = 227/278 (81.65%), Query Frame = 0


Query: 35  MVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI------------- 94
           MVAPD+E+ RFASNFEYLEGEF+L+SALG+GIDSINP+LAFGGPPPI             
Sbjct: 1   MVAPDIEVVRFASNFEYLEGEFFLHSALGKGIDSINPNLAFGGPPPIGAQKANLDHVTAK 60

Query: 95  -------------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANST 154
                              AGG GIKRPLLNLSKEVFSDIFDKA+GFKL+PRFDPY+NS 
Sbjct: 61  MAEEFGNQEIGQLRAVIEAAGGRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSI 120

Query: 155 NFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVV 214
           NFLLAAN+ PYTGLVGLVGATPL    QSRKLAASLLGAESGQNAVIRTLLYQRANE V 
Sbjct: 121 NFLLAANLFPYTGLVGLVGATPLLLLPQSRKLAASLLGAESGQNAVIRTLLYQRANETVH 180

Query: 215 PYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTV 274
           PYN+TVAEFTN TSTLAN+L  CGLKDEGIIVP+SLGAEN+TESN+LA +V S SYSRTV
Sbjct: 181 PYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAENRTESNILAADVYSRSYSRTV 240

Query: 275 QEILRILYASGSESKAGAFFPEGANGLIARSFL-GPNI 280
           +E+LRILYASGSESK GAFFP+GANGLIARSFL G N+
Sbjct: 241 RELLRILYASGSESKVGAFFPKGANGLIARSFLIGSNV 278

[Close]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL
Match: A0A6J1H6Z4 (desiccation-related protein PCC13-62-like OS=Cucurbita moschata OX=3662 GN=LOC111461010 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.6e-91
Identity = 187/308 (60.71%), Postives = 222/308 (72.08%), Query Frame = 0


Query: 3   MKVASFFWTWFLFVVY---SSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 62
           M+  SFF T FL V     SSRVVVC  I+ QC+S  A D ++  FA+NFEY EGE +L 
Sbjct: 1   MRNPSFFSTLFLVVALVFNSSRVVVC-QILGQCRSGPASDSQVVVFATNFEYFEGEMFLW 60

Query: 63  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 122
            ALGRG+DSI+P+LA GGPPPI                                +GG GI
Sbjct: 61  GALGRGMDSIDPTLARGGPPPIGAQRANLDPMVRNIIEEFGYEEIGQLKTLIQVSGGLGI 120

Query: 123 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 182
           +RPLLNLSK+VFSD+FDKA G +L P FDPY ++ +FLLA N+ PY G  GLV A P+  
Sbjct: 121 QRPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPVLL 180

Query: 183 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 242
           FL+SR+LAA LL AESGQNAV+RTLLY+RANE V PYN+TVAEFTNL STLANQLGKCGL
Sbjct: 181 FLESRRLAAKLLSAESGQNAVMRTLLYERANETVEPYNMTVAEFTNLISTLANQLGKCGL 240

Query: 243 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           KDEG++VP+SLGAEN+TE+NVLAT+  S+SY+RT+QEILRILY +GSE   GAFFP GAN
Sbjct: 241 KDEGVVVPRSLGAENRTETNVLATDAKSLSYNRTIQEILRILYGTGSERLPGAFFPNGAN 300

[Close]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL
Match: A0A5A7VQX7 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002020 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.3e-90
Identity = 185/278 (66.55%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 35  MVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI------------- 94
           MVAPD+E+ RFASNFEYLEGEF+L+SALG+GIDSINP+LAFGGPPPI             
Sbjct: 1   MVAPDIEVVRFASNFEYLEGEFFLHSALGKGIDSINPNLAFGGPPPIGAQKANLDHVTAK 60

Query: 95  -------------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANST 154
                              AGG GIKRPLLNLSKEVFSDIFDKA+GFKL+PRFDPY+NS 
Sbjct: 61  MAEEFGNQEIGQLRAVIEAAGGRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSI 120

Query: 155 NFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVV 214
           NFLLAAN+ PYTGLVGLVGATPL    QSRK                      RANE V 
Sbjct: 121 NFLLAANLFPYTGLVGLVGATPLLLLPQSRK----------------------RANETVH 180

Query: 215 PYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTV 274
           PYN+TVAEFTN TSTLAN+L  CGLKDEGIIVP+SLGAEN+TESN+LA +V S SYSRTV
Sbjct: 181 PYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAENRTESNILAADVYSRSYSRTV 240

Query: 275 QEILRILYASGSESKAGAFFPEGANGLIARSFL-GPNI 280
           +E+LRILYASGSESK GAFFP+GANGLIARSFL G N+
Sbjct: 241 RELLRILYASGSESKVGAFFPKGANGLIARSFLIGSNV 256

[Close]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL
Match: A0A6J1KQW9 (desiccation-related protein PCC13-62-like OS=Cucurbita maxima OX=3661 GN=LOC111497857 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.9e-90
Identity = 185/307 (60.26%), Postives = 219/307 (71.34%), Query Frame = 0


Query: 3   MKVASFFWTWFLFVVY---SSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 62
           M+  SFF T F  V     SSRVVVC  I+ QCQS  A D ++  FA+N EYLEGE +L 
Sbjct: 1   MRNPSFFSTLFFVVALAFSSSRVVVC-QILGQCQSRPALDSQVVEFATNLEYLEGEMFLW 60

Query: 63  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 122
            ALGRG+DSI+P+LA GGPPPI                                +GG GI
Sbjct: 61  GALGRGMDSIDPTLARGGPPPIGAERANLDPIVRNIIEEFGYEEIGQLKTLIQVSGGLGI 120

Query: 123 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 182
           +RPLLNLSK+VFSD+FDKA G +L P FDPY ++ +FLLA N+ PY G  GLV A PL  
Sbjct: 121 QRPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPLLS 180

Query: 183 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 242
            L+SRKL A LL AESGQ+AV+RTLLY+RANE V PYN+TVAEFTNLTSTL NQLGKCGL
Sbjct: 181 LLESRKLGAKLLAAESGQSAVMRTLLYERANETVEPYNMTVAEFTNLTSTLVNQLGKCGL 240

Query: 243 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 275
           KDEG++VP+SLGAEN+TE+NVLAT+  S+SY+RT+QEILRILY +GSE  +GAFFP GAN
Sbjct: 241 KDEGVVVPRSLGAENRTETNVLATDTKSLSYNRTIQEILRILYGTGSERLSGAFFPNGAN 300

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: XP_004136041.1 (desiccation-related protein PCC13-62 [Cucumis sativus] >KGN44917.1 hypothetical protein Csa_015603 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 1.4e-121
Identity = 233/308 (75.65%), Postives = 253/308 (82.14%), Query Frame = 0


Query: 1   MRMKVAS-FFWTWFLFVVYSSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 60
           MRMK AS  FW+WF F+VY SRVVVCNNIIDQCQ MVAPD+E+ RFASNFEYLEGEF+L+
Sbjct: 9   MRMKNASIIFWSWFFFLVYLSRVVVCNNIIDQCQPMVAPDIEVVRFASNFEYLEGEFFLH 68

Query: 61  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 120
            ALG GIDSINP+LAFGGPPPI                                AGG GI
Sbjct: 69  CALGEGIDSINPNLAFGGPPPIGAQKANLDPVTANIAKEFGYQEIGQLRSVIEAAGGRGI 128

Query: 121 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 180
           KRPLLNLSKEVFSDIFD+A+GFKLEPRFDPY+NS NFLLAANM PYTGLVGLVGATPL  
Sbjct: 129 KRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGATPLLL 188

Query: 181 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 240
             QSRKLAASLLGAESGQNAVIRTLLYQRANE V PYN+TVAEFTNLTSTLAN+LGKCGL
Sbjct: 189 LPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLGKCGL 248

Query: 241 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           +DEGI+VP SLGAEN+TESN+LA +VNS SYSRTV+E+LRILY SGSESK GAFFP+GAN
Sbjct: 249 RDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFFPKGAN 308

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: XP_008451603.2 (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.4e-105
Identity = 207/278 (74.46%), Postives = 227/278 (81.65%), Query Frame = 0


Query: 35  MVAPDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPI------------- 94
           MVAPD+E+ RFASNFEYLEGEF+L+SALG+GIDSINP+LAFGGPPPI             
Sbjct: 1   MVAPDIEVVRFASNFEYLEGEFFLHSALGKGIDSINPNLAFGGPPPIGAQKANLDHVTAK 60

Query: 95  -------------------AGGSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANST 154
                              AGG GIKRPLLNLSKEVFSDIFDKA+GFKL+PRFDPY+NS 
Sbjct: 61  MAEEFGNQEIGQLRAVIEAAGGRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSI 120

Query: 155 NFLLAANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVV 214
           NFLLAAN+ PYTGLVGLVGATPL    QSRKLAASLLGAESGQNAVIRTLLYQRANE V 
Sbjct: 121 NFLLAANLFPYTGLVGLVGATPLLLLPQSRKLAASLLGAESGQNAVIRTLLYQRANETVH 180

Query: 215 PYNLTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTV 274
           PYN+TVAEFTN TSTLAN+L  CGLKDEGIIVP+SLGAEN+TESN+LA +V S SYSRTV
Sbjct: 181 PYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAENRTESNILAADVYSRSYSRTV 240

Query: 275 QEILRILYASGSESKAGAFFPEGANGLIARSFL-GPNI 280
           +E+LRILYASGSESK GAFFP+GANGLIARSFL G N+
Sbjct: 241 RELLRILYASGSESKVGAFFPKGANGLIARSFLIGSNV 278

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: XP_022960201.1 (desiccation-related protein PCC13-62-like [Cucurbita moschata])

HSP 1 Score: 345.9 bits (886), Expect = 3.3e-91
Identity = 187/308 (60.71%), Postives = 222/308 (72.08%), Query Frame = 0


Query: 3   MKVASFFWTWFLFVVY---SSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 62
           M+  SFF T FL V     SSRVVVC  I+ QC+S  A D ++  FA+NFEY EGE +L 
Sbjct: 1   MRNPSFFSTLFLVVALVFNSSRVVVC-QILGQCRSGPASDSQVVVFATNFEYFEGEMFLW 60

Query: 63  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 122
            ALGRG+DSI+P+LA GGPPPI                                +GG GI
Sbjct: 61  GALGRGMDSIDPTLARGGPPPIGAQRANLDPMVRNIIEEFGYEEIGQLKTLIQVSGGLGI 120

Query: 123 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 182
           +RPLLNLSK+VFSD+FDKA G +L P FDPY ++ +FLLA N+ PY G  GLV A P+  
Sbjct: 121 QRPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPVLL 180

Query: 183 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 242
           FL+SR+LAA LL AESGQNAV+RTLLY+RANE V PYN+TVAEFTNL STLANQLGKCGL
Sbjct: 181 FLESRRLAAKLLSAESGQNAVMRTLLYERANETVEPYNMTVAEFTNLISTLANQLGKCGL 240

Query: 243 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           KDEG++VP+SLGAEN+TE+NVLAT+  S+SY+RT+QEILRILY +GSE   GAFFP GAN
Sbjct: 241 KDEGVVVPRSLGAENRTETNVLATDAKSLSYNRTIQEILRILYGTGSERLPGAFFPNGAN 300

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: XP_023515237.1 (desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 3.3e-91
Identity = 188/308 (61.04%), Postives = 222/308 (72.08%), Query Frame = 0


Query: 3   MKVASFFWTWFLFVVY---SSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 62
           M+  SFF   F  V     SSRVVVC  I+ QC+S  A D ++  FA+NFEYLEGE +L 
Sbjct: 1   MRNPSFFSILFFVVALAFSSSRVVVC-QILGQCRSGSALDSQVIVFATNFEYLEGEMFLW 60

Query: 63  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 122
            ALGRG+DSI+P+LA GGPPPI                                +GG GI
Sbjct: 61  GALGRGMDSIDPTLARGGPPPIGAQRANLDPIVRNIIEEFGYEEIGQLKTLIQVSGGLGI 120

Query: 123 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 182
           +RPLLNLSK+VFSD+FDKA G +L P FDPY ++ +FLLA N+ PY G  GLV A PL  
Sbjct: 121 QRPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPLLL 180

Query: 183 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 242
           FL+SRKLAA LL AESGQ+AV+RTLLY+RANE V PYN+TVAEFTNLTSTLANQLGKCGL
Sbjct: 181 FLESRKLAAKLLSAESGQSAVMRTLLYERANETVEPYNMTVAEFTNLTSTLANQLGKCGL 240

Query: 243 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           KDEG++VP+SLGAEN+TE+NVLAT+  S+SY+RT+QEILRILY +GSE   GAFFP GAN
Sbjct: 241 KDEGVVVPRSLGAENRTETNVLATDAKSLSYNRTIQEILRILYGTGSERLPGAFFPNGAN 300

[Close]

BLAST of Lsi02G023840 vs. NCBI nr
Match: KAG6593187.1 (hypothetical protein SDJN03_12663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.1 bits (884), Expect = 5.6e-91
Identity = 188/308 (61.04%), Postives = 221/308 (71.75%), Query Frame = 0


Query: 3   MKVASFFWTWFLFVVY---SSRVVVCNNIIDQCQSMVAPDVEIFRFASNFEYLEGEFYLN 62
           M+  SFF T FL V     SSR VVC  I+ QCQS  A D +I  FA+NFEYLE E +L 
Sbjct: 1   MRNPSFFSTLFLVVALVFNSSRFVVC-QILGQCQSGPASDSQIVVFATNFEYLESEMFLW 60

Query: 63  SALGRGIDSINPSLAFGGPPPI--------------------------------AGGSGI 122
            ALGRG+DSI+P+LA GGPPPI                                +GG GI
Sbjct: 61  GALGRGMDSIDPTLARGGPPPIGAQRANLDPMVRNIIEEFGYEEIGQLKTLIQVSGGLGI 120

Query: 123 KRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLFF 182
           +RPLLNLSK+VFSD+FDKA G +L P FDPY ++ +FLLA N+ PY G  GLV A P+  
Sbjct: 121 QRPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPVLL 180

Query: 183 FLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCGL 242
           FL+SR+LAA LL AESGQNAV+RTLLY+RANE V PYN+TVAEFTNL STLANQLGKCGL
Sbjct: 181 FLESRRLAAKLLSAESGQNAVMRTLLYERANETVEPYNMTVAEFTNLISTLANQLGKCGL 240

Query: 243 KDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGAN 276
           KDEG++VP+SLGAEN+TE+NVLAT+  S+SY+RT+QEILRILY +GSE   GAFFP GAN
Sbjct: 241 KDEGVVVPRSLGAENRTETNVLATDAKSLSYNRTIQEILRILYGTGSERLPGAFFPNGAN 300

[Close]

BLAST of Lsi02G023840 vs. TAIR 10
Match: AT3G62730.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-66
Identity = 135/270 (50.00%), Postives = 168/270 (62.22%), Query Frame = 0


Query: 37  APDVEIFRFASNFEYLEGEFYLNSALGRGIDSINPSLAFGGPPPIAG------------- 96
           A DV+   FA N E+ E EF+L  A G+G+D+ N +LA GGPPPI               
Sbjct: 32  ASDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPITNRII 91

Query: 97  -----------------GSGIKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLL 156
                              GI RPL+NL++E F+   D+AVG K  PRFDPYANS N+LL
Sbjct: 92  EEFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNYLL 151

Query: 157 AANMLPYTGLVGLVGATPLFFFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPY-N 216
           A+  +PY GL G VG  P   +   +KL A LLG ESGQ+AVIRTLLY+R NE V  Y  
Sbjct: 152 ASYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEYGG 211

Query: 217 LTVAEFTNLTSTLANQLGKCGLKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEI 276
           +TVAE TN  S L N+LG CG+KDEG+ VP  LGAEN+T SN+L+ +  S+SY RT QEI
Sbjct: 212 VTVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQEI 271

[Close]

BLAST of Lsi02G023840 vs. TAIR 10
Match: AT1G47980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-62
Identity = 138/309 (44.66%), Postives = 177/309 (57.28%), Query Frame = 0


Query: 2   RMKVASFFWTWFLFVVYSSRVVVC-----NNIIDQCQSMVAPDVEIFRFASNFEYLEGEF 61
           R  + S    +F F  +  +V  C      N  DQ       D ++  F  N EYLE EF
Sbjct: 8   RSLLVSMVLVFFFFNFHHLQVTSCPDQATTNCTDQ-------DRKLLEFPLNLEYLEAEF 67

Query: 62  YLNSALGRGIDSINPSLAFGGPPPIAGG------------------------------SG 121
           +L  ALG G+D + P+L  GGP PI                                  G
Sbjct: 68  FLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQFAWQEVGHLRAIKKTVKG 127

Query: 122 IKRPLLNLSKEVFSDIFDKAVGFKLEPRFDPYANSTNFLLAANMLPYTGLVGLVGATPLF 181
             RP L+LSK+ F+ + DKA G K  P F+PYANS N+L+A+ ++PY GL G VGA P  
Sbjct: 128 FARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIASYLVPYVGLTGYVGANPKL 187

Query: 182 FFLQSRKLAASLLGAESGQNAVIRTLLYQRANEIVVPYNLTVAEFTNLTSTLANQLGKCG 241
               SRKL A LLG ESGQ+AVIR +LY RA  IV PY +TVA FT+  S L N+LGK G
Sbjct: 188 QCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTVAAFTDKISDLRNKLGKAG 247

Query: 242 LKDEGIIVPQSLGAENQTESNVLATNVNSVSYSRTVQEILRILYASGSESKAGAFFPEGA 276
           +KDEG+IVP+ +GAE Q   NVL  N  S+S+ RT +EILRI+Y SG+ES  G F+P+GA
Sbjct: 248 VKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRIVYGSGNESVPGGFYPKGA 307

The following BLAST results are available for this feature:

BLAST of Lsi02G023840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22242	1.6e-48	42.69	Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 ...	[more]

BLAST of Lsi02G023840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K965	6.6e-122	75.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396330 PE=4 SV=1	[more]
A0A1S3BT08	6.6e-106	74.46	desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC10349283...	[more]
A0A6J1H6Z4	1.6e-91	60.71	desiccation-related protein PCC13-62-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7VQX7	2.3e-90	66.55	Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1KQW9	3.9e-90	60.26	desiccation-related protein PCC13-62-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Lsi02G023840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136041.1	1.4e-121	75.65	desiccation-related protein PCC13-62 [Cucumis sativus] >KGN44917.1 hypothetical ...	[more]
XP_008451603.2	1.4e-105	74.46	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo]	[more]
XP_022960201.1	3.3e-91	60.71	desiccation-related protein PCC13-62-like [Cucurbita moschata]	[more]
XP_023515237.1	3.3e-91	61.04	desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593187.1	5.6e-91	61.04	hypothetical protein SDJN03_12663, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G023840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62730.1	1.3e-66	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G47980.1	1.5e-62	44.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13668	Ferritin_2	coord: 82..175 e-value: 5.8E-12 score: 46.0
None	No IPR available	PANTHER	PTHR31694	DESICCATION-LIKE PROTEIN	coord: 21..82 coord: 86..275
None	No IPR available	PANTHER	PTHR31694:SF12	PROTEIN PCC13-62, PUTATIVE, EXPRESSED-RELATED	coord: 21..82 coord: 86..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023840.1	Lsi02G023840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane