Lsi02G023830 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	desiccation-related protein PCC13-62-like
Location	chr02: 30512688 .. 30513744 (+)
RNA-Seq Expression	Lsi02G023830
Synteny	Lsi02G023830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGAAGTTTAATTGTGGGAAAAGTTCCTCCAAGGCCATTGTTGGATCTAAGAAAGAAAGTTATTGCAGACCTTTTTCAACAAGCATTTGACGAGCCACTCATTCCTCCTTTCGACCCTTATGCCACTCCCCTTAACATCGTCCTCCTTCTTCAGTTCATTACTTACAACGGAATGGTCGGCCTCGTCGGAGCAGCCCCGGCGTTAGCTTTGCTTAAAAATCGTGAGGTAACAGAACGAACAAACAAACCATTCATAAATTCTTTTGGTATCTAAACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATTACTACAGACAGAAGAAAAATATCAAATTATTTATAAATATCGACAATAAAATTTTTCTATATTTGTAAATAGTTTGGCTCATTTTTCTATATTGGAAAAAAGCCCAAATTTTAAAGGGGACTTTTTAAAAATAAAAAAATAAAGTAAACTATTTACACAAAATAACAAAATTTTTAGATGATTGGATAGATGATGATAGAAGTCTATCAAGGTCTATCGGTGATAGAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTATCAGTGATTTTTTTGCTATTTTTTGTAAATAGTTTGACATTTTTTTTATTTGTAAAAATTTCCCAATTTTAAATTATTGAAACTTTTATAATTATTATAACTATTGCTAATTTATTTTTTAGGCGTACACAAAATTTCTAGCAATTGAGGCGGGACAAAATGCTGTTCTCCGAGGGTATTTGTCCGAAAGGGAAAATGACAGGGTGGTTCCCTATAATATAACTGTGGCGGAGTTCACGAGTCGCACGTCGGAGTTGGCGAACCGGCTCGGGAAATGTGGTCTGAAAGACGAAGGAATTAGGGTTCCTCGGCCGCTCGGGGCAGATAATCGAACCGAGAGCAACGTTCTTGCTGGTGATGTTAACTCTCTTGCATATACACGAACTACAAAGGAGATCTTGCGCGTAATTTATGGAACCGGCCGTGCAAGTATCCCTGGTGCATTTTATACCCAA

mRNA sequence

CTTGGAAGTTTAATTGTGGGAAAAGTTCCTCCAAGGCCATTGTTGGATCTAAGAAAGAAAGTTATTGCAGACCTTTTTCAACAAGCATTTGACGAGCCACTCATTCCTCCTTTCGACCCTTATGCCACTCCCCTTAACATCGTCCTCCTTCTTCAGTTCATTACTTACAACGGAATGGTCGGCCTCGTCGGAGCAGCCCCGGCGTTAGCTTTGCTTAAAAATCGGTATTTGTCCGAAAGGGAAAATGACAGGGTGGTTCCCTATAATATAACTGTGGCGGAGTTCACGAGTCGCACGTCGGAGTTGGCGAACCGGCTCGGGAAATGTGGTCTGAAAGACGAAGGAATTAGGGTTCCTCGGCCGCTCGGGGCAGATAATCGAACCGAGAGCAACGTTCTTGCTGGTGATGTTAACTCTCTTGCATATACACGAACTACAAAGGAGATCTTGCGCGTAATTTATGGAACCGGCCGTGCAAGTATCCCTGGTGCATTTTATACCCAA

Coding sequence (CDS)

CTTGGAAGTTTAATTGTGGGAAAAGTTCCTCCAAGGCCATTGTTGGATCTAAGAAAGAAAGTTATTGCAGACCTTTTTCAACAAGCATTTGACGAGCCACTCATTCCTCCTTTCGACCCTTATGCCACTCCCCTTAACATCGTCCTCCTTCTTCAGTTCATTACTTACAACGGAATGGTCGGCCTCGTCGGAGCAGCCCCGGCGTTAGCTTTGCTTAAAAATCGGTATTTGTCCGAAAGGGAAAATGACAGGGTGGTTCCCTATAATATAACTGTGGCGGAGTTCACGAGTCGCACGTCGGAGTTGGCGAACCGGCTCGGGAAATGTGGTCTGAAAGACGAAGGAATTAGGGTTCCTCGGCCGCTCGGGGCAGATAATCGAACCGAGAGCAACGTTCTTGCTGGTGATGTTAACTCTCTTGCATATACACGAACTACAAAGGAGATCTTGCGCGTAATTTATGGAACCGGCCGTGCAAGTATCCCTGGTGCATTTTATACCCAA

Protein sequence

LGSLIVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAAPALALLKNRYLSERENDRVVPYNITVAEFTSRTSELANRLGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFYTQ

Homology

[Close]

BLAST of Lsi02G023830 vs. ExPASy Swiss-Prot
Match: P22242 (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 74/174 (42.53%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 11  PRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAAPALA 70
           PRPLLDL  K  A +   AF + L PPFDPYA  +N +L    + Y G+ G VGA P L 
Sbjct: 118 PRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLE 177

Query: 71  LLKNR-------------------YLSERENDRVVPYNITVAEFTSRTSELANRLGKCGL 130
              +R                    L ER  D+V PY ITVAEFT++ SEL N+LG  G+
Sbjct: 178 SPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGV 237

Query: 131 KDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAF 166
           KD G+ V   LGA+ +   NVLAGD NSLA+ RT +  L           P AF
Sbjct: 238 KDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAF 291

[Close]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL
Match: A0A5A7VN58 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00350 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.5e-46
Identity = 99/185 (53.51%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   LGSLIVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMV 60
           L   I G V PRPLLDL K+ I  L  +AFD PL PPFDPY  PL+  +L  FITY G+ 
Sbjct: 96  LAKFIEGPVIPRPLLDLTKETIGRLIGKAFDPPLSPPFDPYRNPLHYFILCNFITYTGLT 155

Query: 61  GLVGAAPALALLKNR-------------------YLSERENDRVVPYNITVAEFTSRTSE 120
           GLV +AP     ++R                   YL +R NDRV+PY ITVAEFT+ TSE
Sbjct: 156 GLVASAPTFISREDRTVVARFEAMEAGQNAICRQYLYQRSNDRVLPYQITVAEFTNHTSE 215

Query: 121 LANRLGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASI 167
           LANRLG+CG+KDEG+ VPR LGA+NRTESN+LA D NSL YTRT  E++R++ G    S 
Sbjct: 216 LANRLGRCGMKDEGVIVPRLLGAENRTESNILAADSNSLTYTRTIPELMRILQGNENESE 275

[Close]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL
Match: A0A1S3BRA4 (desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC103492837 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.5e-46
Identity = 99/185 (53.51%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   LGSLIVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMV 60
           L   I G V PRPLLDL K+ I  L  +AFD PL PPFDPY  PL+  +L  FITY G+ 
Sbjct: 120 LAKFIEGPVIPRPLLDLTKETIGRLIGKAFDPPLSPPFDPYRNPLHYFILCNFITYTGLT 179

Query: 61  GLVGAAPALALLKNR-------------------YLSERENDRVVPYNITVAEFTSRTSE 120
           GLV +AP     ++R                   YL +R NDRV+PY ITVAEFT+ TSE
Sbjct: 180 GLVASAPTFISREDRTVVARFEAMEAGQNAICRQYLYQRSNDRVLPYQITVAEFTNHTSE 239

Query: 121 LANRLGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASI 167
           LANRLG+CG+KDEG+ VPR LGA+NRTESN+LA D NSL YTRT  E++R++ G    S 
Sbjct: 240 LANRLGRCGMKDEGVIVPRLLGAENRTESNILAADSNSLTYTRTIPELMRILQGNENESE 299

[Close]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL
Match: A0A5D3D3T3 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00440 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.9e-40
Identity = 88/160 (55.00%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 7   GKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAA 66
           G+   RPLL+L K+V +D+F +A    L P FDPY+  +N +L      Y G+VGLVGA 
Sbjct: 84  GRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSINFLLAANLFPYTGLVGLVGAT 143

Query: 67  PALALLKNRYLSERENDRVVPYNITVAEFTSRTSELANRLGKCGLKDEGIRVPRPLGADN 126
           P L L ++R   +R N+ V PYNITVAEFT+RTS LAN+L  CGLKDEGI VPR LGA+N
Sbjct: 144 PLLLLPQSR---KRANETVHPYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAEN 203

Query: 127 RTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           RTESN+LA DV S +Y+RT +E+LR++Y +G  S  GAF+
Sbjct: 204 RTESNILAADVYSRSYSRTVRELLRILYASGSESKVGAFF 240

[Close]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL
Match: A0A5A7VQX7 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002020 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.9e-40
Identity = 88/160 (55.00%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 7   GKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAA 66
           G+   RPLL+L K+V +D+F +A    L P FDPY+  +N +L      Y G+VGLVGA 
Sbjct: 82  GRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSINFLLAANLFPYTGLVGLVGAT 141

Query: 67  PALALLKNRYLSERENDRVVPYNITVAEFTSRTSELANRLGKCGLKDEGIRVPRPLGADN 126
           P L L ++R   +R N+ V PYNITVAEFT+RTS LAN+L  CGLKDEGI VPR LGA+N
Sbjct: 142 PLLLLPQSR---KRANETVHPYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAEN 201

Query: 127 RTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           RTESN+LA DV S +Y+RT +E+LR++Y +G  S  GAF+
Sbjct: 202 RTESNILAADVYSRSYSRTVRELLRILYASGSESKVGAFF 238

[Close]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL
Match: A0A0A0K965 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396330 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.5e-40
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 7   GKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAA 66
           G+   RPLL+L K+V +D+F +A    L P FDPY+  +N +L      Y G+VGLVGA 
Sbjct: 125 GRGIKRPLLNLSKEVFSDIFDEAIGFKLEPRFDPYSNSINFLLAANMFPYTGLVGLVGAT 184

Query: 67  PALALLKNRYLS-------------------ERENDRVVPYNITVAEFTSRTSELANRLG 126
           P L L ++R L+                   +R N+ V PYNITVAEFT+ TS LAN+LG
Sbjct: 185 PLLLLPQSRKLAASLLGAESGQNAVIRTLLYQRANETVDPYNITVAEFTNLTSTLANKLG 244

Query: 127 KCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           KCGL+DEGI VP  LGA+NRTESN+LA DVNS +Y+RT +E+LR++YG+G  S  GAF+
Sbjct: 245 KCGLRDEGIMVPLSLGAENRTESNILAADVNSRSYSRTVRELLRILYGSGSESKVGAFF 303

[Close]

BLAST of Lsi02G023830 vs. NCBI nr
Match: KAA0068016.1 (desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa] >TYK18112.1 desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 7.3e-46
Identity = 99/185 (53.51%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   LGSLIVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMV 60
           L   I G V PRPLLDL K+ I  L  +AFD PL PPFDPY  PL+  +L  FITY G+ 
Sbjct: 96  LAKFIEGPVIPRPLLDLTKETIGRLIGKAFDPPLSPPFDPYRNPLHYFILCNFITYTGLT 155

Query: 61  GLVGAAPALALLKNR-------------------YLSERENDRVVPYNITVAEFTSRTSE 120
           GLV +AP     ++R                   YL +R NDRV+PY ITVAEFT+ TSE
Sbjct: 156 GLVASAPTFISREDRTVVARFEAMEAGQNAICRQYLYQRSNDRVLPYQITVAEFTNHTSE 215

Query: 121 LANRLGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASI 167
           LANRLG+CG+KDEG+ VPR LGA+NRTESN+LA D NSL YTRT  E++R++ G    S 
Sbjct: 216 LANRLGRCGMKDEGVIVPRLLGAENRTESNILAADSNSLTYTRTIPELMRILQGNENESE 275

[Close]

BLAST of Lsi02G023830 vs. NCBI nr
Match: XP_008451604.1 (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 7.3e-46
Identity = 99/185 (53.51%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1   LGSLIVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMV 60
           L   I G V PRPLLDL K+ I  L  +AFD PL PPFDPY  PL+  +L  FITY G+ 
Sbjct: 120 LAKFIEGPVIPRPLLDLTKETIGRLIGKAFDPPLSPPFDPYRNPLHYFILCNFITYTGLT 179

Query: 61  GLVGAAPALALLKNR-------------------YLSERENDRVVPYNITVAEFTSRTSE 120
           GLV +AP     ++R                   YL +R NDRV+PY ITVAEFT+ TSE
Sbjct: 180 GLVASAPTFISREDRTVVARFEAMEAGQNAICRQYLYQRSNDRVLPYQITVAEFTNHTSE 239

Query: 121 LANRLGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASI 167
           LANRLG+CG+KDEG+ VPR LGA+NRTESN+LA D NSL YTRT  E++R++ G    S 
Sbjct: 240 LANRLGRCGMKDEGVIVPRLLGAENRTESNILAADSNSLTYTRTIPELMRILQGNENESE 299

[Close]

BLAST of Lsi02G023830 vs. NCBI nr
Match: XP_038898837.1 (desiccation-related protein PCC13-62-like [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 101/181 (55.80%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 5   IVGKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVG 64
           IVG+VPPRPLL+L  +V+AD    A    LIP FDPYA   N +L  Q ITY   V LVG
Sbjct: 117 IVGRVPPRPLLNLSTEVVADFADAAIGRRLIPRFDPYANDNNFILTAQSITYTSTVSLVG 176

Query: 65  A-------------APALALLKNR------YLSERENDRVVPYNITVAEFTSRTSELANR 124
           A             A  LA+   +      YL +R N  V+PYNIT+AEFT+RTSEL NR
Sbjct: 177 ATTTLISRGVRLLVAKLLAMEAGQNTFFRSYLYQRANQIVIPYNITIAEFTNRTSELTNR 236

Query: 125 LGKCGLKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAF 167
           L KCGLKDEGI VPR LGA+NRT+SN+LA D NSLAYTR TKE+LR+ YGTG  S PG++
Sbjct: 237 LAKCGLKDEGILVPRSLGAENRTDSNLLAADFNSLAYTRITKEVLRIFYGTGNESRPGSY 296

[Close]

BLAST of Lsi02G023830 vs. NCBI nr
Match: XP_023515237.1 (desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 7.8e-40
Identity = 91/174 (52.30%), Postives = 114/174 (65.52%), Query Frame = 0


Query: 12  RPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAAPALAL 71
           RPLL+L K V +DLF +A    L PPFDPY   ++ +L +    Y G  GLV AAP L  
Sbjct: 121 RPLLNLSKDVFSDLFDKAAGRRLSPPFDPYVDTIHFLLAVNLFPYLGYTGLVEAAPLLLF 180

Query: 72  LKNRYLS-------------------ERENDRVVPYNITVAEFTSRTSELANRLGKCGLK 131
           L++R L+                   ER N+ V PYN+TVAEFT+ TS LAN+LGKCGLK
Sbjct: 181 LESRKLAAKLLSAESGQSAVMRTLLYERANETVEPYNMTVAEFTNLTSTLANQLGKCGLK 240

Query: 132 DEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           DEG+ VPR LGA+NRTE+NVLA D  SL+Y RT +EILR++YGTG   +PGAF+
Sbjct: 241 DEGVVVPRSLGAENRTETNVLATDAKSLSYNRTIQEILRILYGTGSERLPGAFF 294

[Close]

BLAST of Lsi02G023830 vs. NCBI nr
Match: TYK18116.1 (desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-39
Identity = 88/160 (55.00%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 7   GKVPPRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAA 66
           G+   RPLL+L K+V +D+F +A    L P FDPY+  +N +L      Y G+VGLVGA 
Sbjct: 84  GRGIKRPLLNLSKEVFSDIFDKAIGFKLKPRFDPYSNSINFLLAANLFPYTGLVGLVGAT 143

Query: 67  PALALLKNRYLSERENDRVVPYNITVAEFTSRTSELANRLGKCGLKDEGIRVPRPLGADN 126
           P L L ++R   +R N+ V PYNITVAEFT+RTS LAN+L  CGLKDEGI VPR LGA+N
Sbjct: 144 PLLLLPQSR---KRANETVHPYNITVAEFTNRTSTLANKLANCGLKDEGIIVPRSLGAEN 203

Query: 127 RTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           RTESN+LA DV S +Y+RT +E+LR++Y +G  S  GAF+
Sbjct: 204 RTESNILAADVYSRSYSRTVRELLRILYASGSESKVGAFF 240

[Close]

BLAST of Lsi02G023830 vs. TAIR 10
Match: AT1G47980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-32
Identity = 72/174 (41.38%), Postives = 100/174 (57.47%), Query Frame = 0


Query: 12  RPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAAPALAL 71
           RP LDL KK  A +  +AF    +PPF+PYA   N ++    + Y G+ G VGA P L  
Sbjct: 123 RPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIASYLVPYVGLTGYVGANPKLQC 182

Query: 72  LKNRYL------SERENDRVV-------------PYNITVAEFTSRTSELANRLGKCGLK 131
             +R L       E   D V+             PY +TVA FT + S+L N+LGK G+K
Sbjct: 183 PASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTVAAFTDKISDLRNKLGKAGVK 242

Query: 132 DEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           DEG+ VP+ +GA+ +   NVL G+  SL++ RT +EILR++YG+G  S+PG FY
Sbjct: 243 DEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRIVYGSGNESVPGGFY 296

[Close]

BLAST of Lsi02G023830 vs. TAIR 10
Match: AT3G62730.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-31
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 0


Query: 11  PRPLLDLRKKVIADLFQQAFDEPLIPPFDPYATPLNIVLLLQFITYNGMVGLVGAAPALA 70
           PRPL++L ++  A    +A      P FDPYA  LN +L   +I Y G+ G VG  P L 
Sbjct: 113 PRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNYLLASYYIPYVGLTGYVGTIPYLV 172

Query: 71  LLK-------------------NRYLSERENDRVVPY-NITVAEFTSRTSELANRLGKCG 130
                                    L ER+N++V  Y  +TVAE T+  S L N LG CG
Sbjct: 173 YFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEYGGVTVAELTNEISNLRNELGMCG 232

Query: 131 LKDEGIRVPRPLGADNRTESNVLAGDVNSLAYTRTTKEILRVIYGTGRASIPGAFY 167
           +KDEG+ VP  LGA+NRT SN+L+ D  SL+Y RT +EILRV+YGTG    PG F+
Sbjct: 233 IKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQEILRVMYGTGDEHRPGGFW 288

The following BLAST results are available for this feature:

BLAST of Lsi02G023830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22242	5.5e-28	42.53	Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 ...	[more]

BLAST of Lsi02G023830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VN58	3.5e-46	53.51	Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BRA4	3.5e-46	53.51	desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC10349283...	[more]
A0A5D3D3T3	4.9e-40	55.00	Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7VQX7	4.9e-40	55.00	Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0K965	6.5e-40	50.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396330 PE=4 SV=1	[more]

BLAST of Lsi02G023830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068016.1	7.3e-46	53.51	desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa] >TYK18112.1...	[more]
XP_008451604.1	7.3e-46	53.51	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo]	[more]
XP_038898837.1	2.3e-44	55.80	desiccation-related protein PCC13-62-like [Benincasa hispida]	[more]
XP_023515237.1	7.8e-40	52.30	desiccation-related protein PCC13-62-like [Cucurbita pepo subsp. pepo]	[more]
TYK18116.1	1.0e-39	55.00	desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G023830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47980.1	2.9e-32	41.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G62730.1	3.2e-31	42.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31694:SF12	PROTEIN PCC13-62, PUTATIVE, EXPRESSED-RELATED	coord: 75..166 coord: 7..77
None	No IPR available	PANTHER	PTHR31694	DESICCATION-LIKE PROTEIN	coord: 75..166
None	No IPR available	PANTHER	PTHR31694	DESICCATION-LIKE PROTEIN	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023830.1	Lsi02G023830.1	mRNA