Lsi02G023580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein no-on-transient A-like
Location	chr02: 30241250 .. 30241591 (-)
RNA-Seq Expression	Lsi02G023580
Synteny	Lsi02G023580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTACTCACTTCTGCTGCCAATCGCGGCGGCACTTCCAATGCTCTTACCGGAATGCTCCATCGGAACATCCTTCAGTCGGCGGCTCATCAAATTGCAGATAACAATGTCGATTCCTCTTCCGAACGAAAGATGAATGTTCATATCAAAAAAGCCAGAGTGCGGATGCGACCTTTAGTGACTGGCACTGGCCCTGGCACCCATACATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCATTGGATTTCTGCTAATTTTTTTGGGATTGTTCATGTGA

mRNA sequence

ATGGCTGCCATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTACTCACTTCTGCTGCCAATCGCGGCGGCACTTCCAATGCTCTTACCGGAATGCTCCATCGGAACATCCTTCAGTCGGCGGCTCATCAAATTGCAGATAACAATGTCGATTCCTCTTCCGAACGAAAGATGAATGTTCATATCAAAAAAGCCAGAGTGCGGATGCGACCTTTAGTGACTGGCACTGGCCCTGGCACCCATACATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCATTGGATTTCTGCTAATTTTTTTGGGATTGTTCATGTGA

Coding sequence (CDS)

ATGGCTGCCATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTACTCACTTCTGCTGCCAATCGCGGCGGCACTTCCAATGCTCTTACCGGAATGCTCCATCGGAACATCCTTCAGTCGGCGGCTCATCAAATTGCAGATAACAATGTCGATTCCTCTTCCGAACGAAAGATGAATGTTCATATCAAAAAAGCCAGAGTGCGGATGCGACCTTTAGTGACTGGCACTGGCCCTGGCACCCATACATCGGCGGCGAATCGGAGCCGAGTCGCTTCTTTTGGCATTGGATTTCTGCTAATTTTTTTGGGATTGTTCATGTGA

Protein sequence

MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSSSERKMNVHIKKARVRMRPLVTGTGPGTHTSAANRSRVASFGIGFLLIFLGLFM

Homology

[Close]

BLAST of Lsi02G023580 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAIKSLISI+LLALLFFSESL TSAAN  G SN++T ML RNILQ+A H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKMNVHIKKARV-RMRPLVTGTGPGTHTSAANRSRVASFGIGFLLIFLGLFM 114
           SE KMNV IKK  + R RP+  GTG GT +SAANRSRV SFG+GFLL F GL +
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Lsi02G023580 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAIKSL+ I+LLALLFFSESL TSAA+  G SN++TGML RN+LQ+A H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKMNVHIKK-ARVRMRPLVTGTG-PGTHTSAANRSRVASFGIGFLLIFLGLFM 114
           SE KMNVHIK+    R+RP+  GTG  G   SAA+RS+VASFG+GFLL F  LF+
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Lsi02G023580 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 71/142 (50.00%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLL-TSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDS 60
           MAAIK+ I I+LLALLFF E L       RG  SN++TG+LHR ILQ+AAH+ A +NV+S
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKM-NVHIK---------------------------KARVRMRPLVTGTGPGTHTSA 114
           SSERKM NVH+K                           + R   R  + G G G H SA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Lsi02G023580 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAI+ L+SIALLALLFFSESLL        TS++LTG+ HRNIL + AH+I + +V+SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLL--------TSHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKMNVHIKKARVRMRP-LVTGTGPGTHTSAANRSRVASFGIGFLL---IFLGLFM 114
            +RK N    K R R+RP L++G+    H SA NRSRVASF +G +L   IFLGLF+
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Lsi02G023580 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAI+ L+SIALLALLFFSESLL        TS++LTG+ HRNIL + AH+I + +V+SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLL--------TSHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKMNVHIKKARVRMRP-LVTGTGPGTHTSAANRSRVASF 101
            +RK N    K R R+RP L++G+    H SA NRSRVASF
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASF 93

[Close]

BLAST of Lsi02G023580 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-28
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAA+KSL+S+ALLALL FSESL  SA +R G SN+LTGML RN+LQ+AAHQIADN+V+SS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  SERKMNVHIKKARVRMRPLVTGTGPGTHTSAANRSRVASFGIGFLLIFLGLFM 114
            ERKMNVHIK+   RMRP+ T    GT +SAANRSR+AS G+G +L+ LGLF+
Sbjct: 61  PERKMNVHIKR---RMRPVAT----GTRSSAANRSRIASIGVGSVLVVLGLFL 106

[Close]

BLAST of Lsi02G023580 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAIKSLISI+LLALLFFSESL TSAAN  G SN++T ML RNILQ+A H+IAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKMNVHIKKARV-RMRPLVTGTGPGTHTSAANRSRVASFGIGFLLIFLGLFM 114
           SE KMNV IKK  + R RP+  GTG GT +SAANRSRV SFG+GFLL F GL +
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Lsi02G023580 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAIKSL+ I+LLALLFFSESL TSAA+  G SN++TGML RN+LQ+A H+IAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKMNVHIKK-ARVRMRPLVTGTG-PGTHTSAANRSRVASFGIGFLLIFLGLFM 114
           SE KMNVHIK+    R+RP+  GTG  G   SAA+RS+VASFG+GFLL F  LF+
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Lsi02G023580 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-17
Identity = 71/142 (50.00%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLL-TSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDS 60
           MAAIK+ I I+LLALLFF E L       RG  SN++TG+LHR ILQ+AAH+ A +NV+S
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKM-NVHIK---------------------------KARVRMRPLVTGTGPGTHTSA 114
           SSERKM NVH+K                           + R   R  + G G G H SA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Lsi02G023580 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MAAIKSLISIALLALLFFSESLLTSAANRGGTSNALTGMLHRNILQSAAHQIADNNVDSS 60
           MAAI+ L+SIALLALLFFSESLL        TS++LTG+ HRNIL + AH+I + +V+SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLL--------TSHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKMNVHIKKARVRMRP-LVTGTGPGTHTSAANRSRVASFGIGFLL---IFLGLFM 114
            +RK N    K R R+RP L++G+    H SA NRSRVASF +G +L   IFLGLF+
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

The following BLAST results are available for this feature:

BLAST of Lsi02G023580 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G023580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAQ7	1.4e-25	67.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]
A0A5A7VLE5	3.1e-22	62.61	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BRF6	2.3e-17	50.00	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
A0A5D3D3Y6	6.7e-17	55.56	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BT53	2.4e-14	56.44	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]

BLAST of Lsi02G023580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575859.1	3.5e-28	67.26	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN44886.1	2.8e-25	67.54	hypothetical protein Csa_015765 [Cucumis sativus]	[more]
KAA0068047.1	6.5e-22	62.61	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]
XP_008451666.1	4.8e-17	50.00	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
KAA0046715.1	1.4e-16	55.56	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3...	[more]

BLAST of Lsi02G023580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023580.1	Lsi02G023580.1	mRNA