Lsi02G023570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein no-on-transient A-like
Location	chr02: 30236979 .. 30237323 (-)
RNA-Seq Expression	Lsi02G023570
Synteny	Lsi02G023570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTTTCCGAATCCCTAGCCACTTCTGCCGCCGATCACGACGGCGCTTCCAATTCTCTAACCGGAATGATCCGCCGGAACGTCCTTCAGACGGCGGCTCATGAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGAAAGACGAATGTTCATATCAAAAAAGCTAGAGGGGGGCGGATTCGACCTATAGTGACTGGCACTGGCACTGGCAACCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCATATGGCGTTGGATTTCTGCTCTTCTTTTTGGGATTTTTCATGTGA

mRNA sequence

ATGGCTGACATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTTTCCGAATCCCTAGCCACTTCTGCCGCCGATCACGACGGCGCTTCCAATTCTCTAACCGGAATGATCCGCCGGAACGTCCTTCAGACGGCGGCTCATGAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGAAAGACGAATGTTCATATCAAAAAAGCTAGAGGGGGGCGGATTCGACCTATAGTGACTGGCACTGGCACTGGCAACCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCATATGGCGTTGGATTTCTGCTCTTCTTTTTGGGATTTTTCATGTGA

Coding sequence (CDS)

ATGGCTGACATCAAATCCCTAATTTCCATAGCTCTTCTCGCCCTTCTCTTCTTTTCCGAATCCCTAGCCACTTCTGCCGCCGATCACGACGGCGCTTCCAATTCTCTAACCGGAATGATCCGCCGGAACGTCCTTCAGACGGCGGCTCATGAAATTGCAGATAACAATGTCGAGTCCTCTTCCGAACGAAAGACGAATGTTCATATCAAAAAAGCTAGAGGGGGGCGGATTCGACCTATAGTGACTGGCACTGGCACTGGCAACCGTAAATCGGCGGCGAATCGGAGCCGAGTCGCTTCATATGGCGTTGGATTTCTGCTCTTCTTTTTGGGATTTTTCATGTGA

Protein sequence

MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESSSERKTNVHIKKARGGRIRPIVTGTGTGNRKSAANRSRVASYGVGFLLFFLGFFM

Homology

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BLAST of Lsi02G023570 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA IKSL+ I+LLALLFFSESL+TSAAD  GASNS+TGM+RRNVLQTA HEIAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKTNVHIKKARGGRIRPIVTGTG-TGNRKSAANRSRVASYGVGFLLFFLGFFM 115
           SE K NVHIK+  GGRIRP+  GTG TGNRKSAA+RS+VAS+G+GFLLFF   F+
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Lsi02G023570 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.8e-28
Identity = 79/114 (69.30%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA IKSLISI+LLALLFFSESL+TSAA+  GASNS+T M+RRN+LQTA HEIAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKTNVHIKKARGGRIRPIVTGTGTGNRKSAANRSRVASYGVGFLLFFLGFFM 115
           SE K NV IKK   GR RPI  GTGTG R SAANRSRV S+G+GFLLFF G  +
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Lsi02G023570 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 73/142 (51.41%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGA-SNSLTGMIRRNVLQTAAHEIADNNVES 60
           MA IK+ I I+LLALLFF E L        GA SNS+TG++ R +LQTAAH+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERK-TNVHIK----------------KARGGR----------IRPIVTGTGTGNRKSA 115
           SSERK  NVH+K                  RGGR           R  + G GTG+ KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Lsi02G023570 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.3e-15
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA I+ L+SIALLALLFFSESL T        S+SLTG+  RN+L T AH I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKTN-VHIKKARGGRIRPI-VTGTGTGNRKSAANRSRVASYGVGFLL---FFLGFFM 115
            +RK+N +H K  R  RIRPI ++G+   + KSA NRSRVAS+ VG +L    FLG F+
Sbjct: 61  YQRKSNKLHTKDRR--RIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Lsi02G023570 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.6e-13
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA I+ L+SIALLALLFFSESL T        S+SLTG+  RN+L T AH I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKTN-VHIKKARGGRIRPI-VTGTGTGNRKSAANRSRVASY 102
            +RK+N +H K  R  RIRPI ++G+   + KSA NRSRVAS+
Sbjct: 61  YQRKSNKLHTKDRR--RIRPILISGSNGMHHKSAENRSRVASF 93

[Close]

BLAST of Lsi02G023570 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-30
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA IKSL+ I+LLALLFFSESL+TSAAD  GASNS+TGM+RRNVLQTA HEIAD      
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIAD------ 60

Query: 61  SERKTNVHIKKARGGRIRPIVTGTG-TGNRKSAANRSRVASYGVGFLLFFLGFFM 115
           SE K NVHIK+  GGRIRP+  GTG TGNRKSAA+RS+VAS+G+GFLLFF   F+
Sbjct: 61  SEGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of Lsi02G023570 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-28
Identity = 79/114 (69.30%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA IKSLISI+LLALLFFSESL+TSAA+  GASNS+T M+RRN+LQTA HEIAD      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIAD------ 60

Query: 61  SERKTNVHIKKARGGRIRPIVTGTGTGNRKSAANRSRVASYGVGFLLFFLGFFM 115
           SE K NV IKK   GR RPI  GTGTG R SAANRSRV S+G+GFLLFF G  +
Sbjct: 61  SEGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of Lsi02G023570 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA +KSL+S+ALLALL FSESL  SA D  G SNSLTGM+RRNVLQTAAH+IADN+VESS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  SERKTNVHIKKARGGRIRPIVTGTGTGNRKSAANRSRVASYGVGFLLFFLGFFM 115
            ERK NVHIK+    R+RP+ TGT    R SAANRSR+AS GVG +L  LG F+
Sbjct: 61  PERKMNVHIKR----RMRPVATGT----RSSAANRSRIASIGVGSVLVVLGLFL 106

[Close]

BLAST of Lsi02G023570 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 73/142 (51.41%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGA-SNSLTGMIRRNVLQTAAHEIADNNVES 60
           MA IK+ I I+LLALLFF E L        GA SNS+TG++ R +LQTAAH+ A +NVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERK-TNVHIK----------------KARGGR----------IRPIVTGTGTGNRKSA 115
           SSERK  NVH+K                  RGGR           R  + G GTG+ KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of Lsi02G023570 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MADIKSLISIALLALLFFSESLATSAADHDGASNSLTGMIRRNVLQTAAHEIADNNVESS 60
           MA I+ L+SIALLALLFFSESL T        S+SLTG+  RN+L T AH I + +VESS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  SERKTN-VHIKKARGGRIRPI-VTGTGTGNRKSAANRSRVASYGVGFLL---FFLGFFM 115
            +RK+N +H K  R  RIRPI ++G+   + KSA NRSRVAS+ VG +L    FLG F+
Sbjct: 61  YQRKSNKLHTKDRR--RIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

The following BLAST results are available for this feature:

BLAST of Lsi02G023570 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G023570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLE5	3.1e-30	71.30	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KAQ7	3.8e-28	69.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]
A0A1S3BRF6	5.2e-17	51.41	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
A0A5D3D3Y6	8.3e-15	53.78	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BT53	4.6e-13	55.34	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]

BLAST of Lsi02G023570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068047.1	6.5e-30	71.30	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]
KGN44886.1	7.9e-28	69.30	hypothetical protein Csa_015765 [Cucumis sativus]	[more]
KAG6575859.1	1.0e-27	67.54	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008451666.1	1.1e-16	51.41	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
KAA0046715.1	1.7e-14	53.78	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3...	[more]

BLAST of Lsi02G023570 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023570.1	Lsi02G023570.1	mRNA