Lsi02G023340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G023340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H2A
Location	chr02: 29982756 .. 29983698 (+)
RNA-Seq Expression	Lsi02G023340
Synteny	Lsi02G023340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATTCTTCATTATAAAACCAAACCAAGCCCTCTCTTCGTCTCCATCTCGTCAAAAATCTTCTCTGATTCATATCGATCACTCTTCAACCTCACAACAACCGGAAGCAAAAATGAGTTCAACCGACGTTCCGGCGAAGGGCGGTAGAGGCAGGAAAGCATCTACCAAGTCCGTCTCCAGGTCTCATAAGGCCGGTCTCCAATTCCCCGTTGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGCGTCGGCTCAGGCTCCCCGGTCTACCTTTCCGCCGTCCTTGAATACCTTGCTGCCGAGGTTCGTAATCGCTAAATTTACTTCGAGTTCTATGCTTCAGTTCTCAGTGTTCTGATTTAGACTTTTTGTTTTTAATTTAGGTTTTGGAGTTAGCGGGCAATGCTGCGAGGGACAACAAGAAGAACAGAATTATTCCAAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAACTTTTGGGATCGGTTACGATTGCAAGTGGCGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCTGAAATCGGATCGGCGTCTCAGGAATTCTAGATTACAGAAGAAATCGCCATTGATGAATAGAAAATTAGATAGCTAGGTTATGTTAGATTTTGTCATTAGGTTCAATGAATCAGATCATACTTCTTTTGGTATGTAAATTTGCGAAATGAATTCGCTTAGATTAGTATATGGCATCGTCGTCGTTCAAATTTTCTATTACTCAGTGTAAATGCCGATGAAGTTCAACACTAATTTGAATCGAAAGAAAGTATTTGAGTTTTCAATTTCCTGTAATTTCTTTAAATTTCTCATCAGTCAAACAAGAATTACGAGATTTGTCCTCTTTGAAATGCGAAATCTTCAAATTATTT

mRNA sequence

GTTTCATTCTTCATTATAAAACCAAACCAAGCCCTCTCTTCGTCTCCATCTCGTCAAAAATCTTCTCTGATTCATATCGATCACTCTTCAACCTCACAACAACCGGAAGCAAAAATGAGTTCAACCGACGTTCCGGCGAAGGGCGGTAGAGGCAGGAAAGCATCTACCAAGTCCGTCTCCAGGTCTCATAAGGCCGGTCTCCAATTCCCCGTTGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGCGTCGGCTCAGGCTCCCCGGTCTACCTTTCCGCCGTCCTTGAATACCTTGCTGCCGAGGTTTTGGAGTTAGCGGGCAATGCTGCGAGGGACAACAAGAAGAACAGAATTATTCCAAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAACTTTTGGGATCGGTTACGATTGCAAGTGGCGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCTGAAATCGGATCGGCGTCTCAGGAATTCTAGATTACAGAAGAAATCGCCATTGATGAATAGAAAATTAGATAGCTAGGTTATGTTAGATTTTGTCATTAGGTTCAATGAATCAGATCATACTTCTTTTGGTATGTAAATTTGCGAAATGAATTCGCTTAGATTAGTATATGGCATCGTCGTCGTTCAAATTTTCTATTACTCAGTGTAAATGCCGATGAAGTTCAACACTAATTTGAATCGAAAGAAAGTATTTGAGTTTTCAATTTCCTGTAATTTCTTTAAATTTCTCATCAGTCAAACAAGAATTACGAGATTTGTCCTCTTTGAAATGCGAAATCTTCAAATTATTT

Coding sequence (CDS)

GTTTCATTCTTCATTATAAAACCAAACCAAGCCCTCTCTTCGTCTCCATCTCGTCAAAAATCTTCTCTGATTCATATCGATCACTCTTCAACCTCACAACAACCGGAAGCAAAAATGAGTTCAACCGACGTTCCGGCGAAGGGCGGTAGAGGCAGGAAAGCATCTACCAAGTCCGTCTCCAGGTCTCATAAGGCCGGTCTCCAATTCCCCGTTGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGCGTCGGCTCAGGCTCCCCGGTCTACCTTTCCGCCGTCCTTGAATACCTTGCTGCCGAGGTTTTGGAGTTAGCGGGCAATGCTGCGAGGGACAACAAGAAGAACAGAATTATTCCAAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAACTTTTGGGATCGGTTACGATTGCAAGTGGCGGAGTGATGCCGAAGATTCATCAGTCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAGGCTGAAATCGGATCGGCGTCTCAGGAATTCTAG

Protein sequence

VSFFIIKPNQALSSSPSRQKSSLIHIDHSSTSQQPEAKMSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF

Homology

[Close]

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-56
Identity = 114/135 (84.44%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 46  AKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAE 105
           AKGGRG+  STKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAAE
Sbjct: 6   AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65

Query: 106 VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAG 165
           VLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ LLPKK+G
Sbjct: 66  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125

Query: 166 NAKDKAEIGSASQEF 181
             KDK EIGSASQEF
Sbjct: 126 --KDKGEIGSASQEF 138

[Close]

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 48  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 107
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 108 ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 167
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 168 KDKAEIGSASQEF 181
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot
Match: Q2QPG9 (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 48  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 107
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 108 ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 167
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 168 KDKAEIGSASQEF 181
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.3e-55
Identity = 115/142 (80.99%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSST    KGGRG+  ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-54
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 47  KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 106
           KGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 107 LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGN 166
           LELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 167 AKDKAEIGSASQEF 181
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL
Match: A0A1S3BRH7 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.3e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSST+V  KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL
Match: A0A0A0K525 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.1e-67
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSST+V  KGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL
Match: A0A6J1GNM4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.6e-67
Identity = 137/145 (94.48%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 36  EAKMSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 95
           + KMSS DVP KGGRG+K+  KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL
Sbjct: 8   KVKMSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 67

Query: 96  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 155
           SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI
Sbjct: 68  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 127

Query: 156 HQSLLPKKAGNAKDKAEIGSASQEF 181
           HQSLLPKKAGNAKDKAEIGSASQEF
Sbjct: 128 HQSLLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL
Match: A0A6J1L0A1 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.2e-65
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSSTDVPAK GRG+K++TKSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL
Match: A0A6J1HB52 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSSTDVPAKGGRG+K++ KSV+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. NCBI nr
Match: XP_038896926.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSSTD+PAKGGRGRKASTKSVSRSHKAGLQFPVGR+ARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDIPAKGGRGRKASTKSVSRSHKAGLQFPVGRVARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. NCBI nr
Match: XP_008451416.1 (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 4.7e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSST+V  KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. NCBI nr
Match: XP_004148882.1 (histone H2AX [Cucumis sativus] >KGN44845.1 hypothetical protein Csa_016006 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-66
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSST+V  KGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. NCBI nr
Match: XP_022953582.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-66
Identity = 137/145 (94.48%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 36  EAKMSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 95
           + KMSS DVP KGGRG+K+  KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL
Sbjct: 8   KVKMSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 67

Query: 96  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 155
           SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI
Sbjct: 68  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 127

Query: 156 HQSLLPKKAGNAKDKAEIGSASQEF 181
           HQSLLPKKAGNAKDKAEIGSASQEF
Sbjct: 128 HQSLLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Lsi02G023340 vs. NCBI nr
Match: KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-66
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 39  MSSTDVPAKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 98
           MSSTDVP KGGRG+K++ KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 99  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 158
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 159 LLPKKAGNAKDKAEIGSASQEF 181
           LLPKKAGNAK+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-55
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 47  KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 106
           KGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 107 LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGN 166
           LELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 167 AKDKAEIGSASQEF 181
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-55
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 47  KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 106
           KGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 107 LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGN 166
           LELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 167 AKDKAEIGSASQEF 181
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Lsi02G023340 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-48
Identity = 99/128 (77.34%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 49  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 108
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 109 EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 168
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 169 GNAKDKAE 173
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of Lsi02G023340 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-48
Identity = 99/128 (77.34%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 49  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 108
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 109 EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 168
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 169 GNAKDKAE 173
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of Lsi02G023340 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 188.3 bits (477), Expect = 5.2e-48
Identity = 95/122 (77.87%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 51  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 110
           G  ++ K+ +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 111 GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 170
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK G +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPS 128

Query: 171 AE 173
           AE
Sbjct: 129 AE 130

The following BLAST results are available for this feature:

BLAST of Lsi02G023340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35063	1.7e-56	84.44	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.9e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]
Q2QPG9	1.9e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 ...	[more]
O65759	4.3e-55	80.99	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
O04848	1.6e-54	82.09	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]

BLAST of Lsi02G023340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRH7	2.3e-67	97.89	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1	[more]
A0A0A0K525	5.1e-67	97.18	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]
A0A6J1GNM4	6.6e-67	94.48	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1	[more]
A0A6J1L0A1	6.2e-65	92.96	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1	[more]
A0A6J1HB52	1.4e-64	92.25	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1	[more]

BLAST of Lsi02G023340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896926.1	1.1e-68	98.59	histone H2AX-like [Benincasa hispida]	[more]
XP_008451416.1	4.7e-67	97.89	PREDICTED: histone H2AX-like [Cucumis melo]	[more]
XP_004148882.1	1.0e-66	97.18	histone H2AX [Cucumis sativus] >KGN44845.1 hypothetical protein Csa_016006 [Cucu...	[more]
XP_022953582.1	1.4e-66	94.48	histone H2AX-like [Cucurbita moschata]	[more]
KAG6575875.1	3.1e-66	95.77	Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi02G023340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	1.2e-55	82.09	Histone superfamily protein	[more]
AT1G54690.1	1.5e-55	82.09	gamma histone variant H2AX	[more]
AT4G27230.1	1.4e-48	77.34	histone H2A 2	[more]
AT4G27230.2	1.4e-48	77.34	histone H2A 2	[more]
AT1G51060.1	5.2e-48	77.87	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 86..101 score: 75.0 coord: 143..161 score: 63.11 coord: 115..129 score: 78.03 coord: 101..114 score: 89.46 coord: 57..79 score: 69.65
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 46..166 e-value: 8.2E-77 score: 271.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 51..163 e-value: 2.64631E-70 score: 206.802
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 135..168 e-value: 1.2E-17 score: 63.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 45..172 e-value: 1.8E-63 score: 214.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 19..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 22..132 e-value: 2.1E-17 score: 63.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..62
None	No IPR available	PANTHER	PTHR23430:SF207	HISTONE H2A	coord: 45..178
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 45..178
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 65..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023340.1	Lsi02G023340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity