Lsi02G022990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G022990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S19
Location	chr02: 29577233 .. 29582530 (+)
RNA-Seq Expression	Lsi02G022990
Synteny	Lsi02G022990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTAGCTGTTTTAGCTGTGTTTGCAAATGAAATCATTCATAATCAGCTAAATTCAGAAGCTGCCATGGCAAAAAGTTTTGATGTGCACCGGTCGGTACAACATGTTAAATCATTTCAAGTTCCCTAAATGTTATATTTAGATCTGAATTACTTGCTAGCATTGAATGTAGAATATAACATAACTTTGTTATTAATTAGCTATTTCAATGAAGTTGGCTGGAAAAGTGTGGGATTTCATGTTTTTGACAGCTTGATCATTGTTATTGGAGCACTTTTTCTGTTCTTTTATGGTAAAAAACTTTTGAGATTATAAATCAATGGATTAGATACTGAACTTATTAAAAGGTGAAGGCATTATGTGAGGAGTTTTTACTCTGATTTTTACATCCACAAGTTTGTCAGGTGGGATTGATTTTTTGGAGGCTTTAAAAGTGATTATCTGAAAATTTTAACTGTTTTTAGTTTTTGTTAAACCAATTATTAATTAATGGGAAGCAATTTACTTTTTAGATTTGGTTGGTTTTAATCTAGTTAAATAGCTATTGGGATTGATTTCTTAAAAAAATTGATATTCTAACCTACCTTTTAAATTTTCATTTTATTCTACATTTTCACTTCTAAAATTGAAATTTACCAAACTTTTTTTAATTTAATTATCAATGTATTTTGTTACAGCATATTTGACAACAATTATCCTTTACGTTACAACCTTCTCAAATTGAGTCTTAGAAGATTGGCATGCTAATTAAATAAGTGATTGAACTAGTAATGACTATGAGTCAAAGTGAGCATAATTCAACTAGTATAAAATGTGTGTAAATGATCAAAATATTTGAAATTCAAATCTCATCACTTGTTGAACTGAAAAATTTTAAAATATAGATAATAACTTGTAAGTGAATTTGAATAATTTGAATAGACTTTGGTTTCGAAGGTGTTTTTAGTCCATTCAAGTAATTTAGACCAAGTTTGTTGTGAAAAATGAGTTTTAAAAATTATGTAATTAACCAAAGTGCTTTTAGAATGAGCTTGGCATGTTTAGTGATTTTGATATTGTGAAAATCATCTTTGTCATTTTTAAATCATTTTGTGTATTTATTGATTCAAAATCTTTTTAAATAAAATTGCATGATATTGAAATTGATTTTAAAACGATAAAAGTGACACCATTTTGCGAATTCATGGATCATTTAGCTATGGCGAAATTATATAAAATACTCCTAAATTTTATATTTTGTGTAAAAAAAATAGTTATGAACTTTAACAAATTTCAATAATATTCTTGAACTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTTGCAATTCAAATTGAAAAAACACTCTTGAACTCTCAAAATTTAAAGACTGAAGTATCCATCTTAAAATCTTTGGATCAAATATATATCAAATTCAAACTTCAAATATCAAAAGTGTATTTTACACCCTTTAACATCGACCTTCATTATTTTAAAGGATAATGAACAATATCATTATATTCAAAATTCATTGTAATTTAAAATAGATTTGTTAATTTCAATAAATATAAAGAGATTCGAACTACAGATTTTCTGGTTGTTAACACATGTGCATGTCAATTGAGTTATGTCCAATTTGACAAGAAATTACAATTTTGGAGAAACAACGGACAAACAAAAATATTTAAATACACTATATCCATATCGTATTATCTTTAAAAATGAGTTTAGTTTTACAATTTTGAAGTTAGAACACGTCTTACAATTTTGATTCTTCAATCTTCCATGATGTAATTGTTAAACTAAATTTTTGTGGTCAAACTATGAGTTTAGTTTTTCAACTATTAGGTTAACTTATTATTTTTATTCAACGTTCAAATATCAAGTTTGTTATATATATATCTTGTTGGTATTTTTTTTAGGTCTTATATTTAATATTTTTCAAAATCAATAAACATTTTTAAATATAAAATTAAATTTTGTGTTTTATATCTTATAGGACGATAAACTTTCTAATTTTCCTTCTAATAGATTTACGAATTTAAATATGCATCAATAGGTCAATATTGTATAGGTTATAAATTTGATTTCTATAATTCGGAGAAAATTAATTTTTTTTTTTGAAAAGAGAAAATTAAACTTTTATTTCAATCGTTTGATGAAATCTTCTAAATCATAAAACTAAATTCTGATTTTTAAAACCACGGTAAGTAAATTTTCAATTTTGTAATTTAACCTTTTTCTTTATGTACAAAAAAATTGATTGGCTAATAGATATATTCAGAATAAGCTAGCGATTTAATTCTTAAAAAATATGGCGTCTAGGGGCAATTACGGAAACTAAAAAAATGAAGAGGGTATAATTGAAATATCACAAATCAAACAGGTTGAAAACGAGAAATTTCCGAATATAAATATAGGGCACTTATCACTCTTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCAGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGACGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTATACATTTTCTTTTCTCAATTCGGCTTTTTCTGTTTTGATGGCTGAGAGAGCTAGATTTTCGATTCGACGGAGTATTATAGGATGTAGATTTCGAAAACAGAGTGAATGCTAAACTTGAAGTTCCAATGTTTCCGGCTCTGTCAAGGGGCGTGATCGATTCTGCATTGTTTCTTCTCTTTATTTCTTTATTTTGGCATCTATTGTAGTTTTTTTTTAATCAAACAAGGAGTTTGCAAGTCTTAGGCTGTAGACTTTTTGATTGATGTGCTACTAATTTTTGTTTTTTTTAATCTTAATTGGTTATCAAATTATCTGCTCGTGCTTTGAATATGCCTCATCTGTTGATTAAGTTTGTGGGTTGGGTACAATTTGTCAATTTGTTCTTGTTTTTCCTGCTTGTTCCGCATTATCTGAGAAATCGTGATTTTTTTTACTGGGTTTATACTTCTTATTGACTGTTTCTGGGATCTTGTACATTTTGTAGATACGTTCTCAGTTAAGGAATTCTTTAACGTTTCACAGAGCTCCTATATTACTGGGATTTTAATGGCTTTCATGGTTTTTTTGGCCATATGGAAGAATTTCATGTAATTGTCCATTGGTCGTGATTTGGCTTTTCGCCCGCTACTGTAATATTTCACTCTGTCAATGAATGTTTCCTATTAAAGGAAATGAACAACTTAGAAGGCCTTTTCGATTCTCCCTGGTTTGGATTATCTGATTTTTTAATCCCATTTTTAGTAGTTATGCTGTTCTTACATTTTGATTGGTTAGAACTTTCTACCTTATATGTTCCTTGTTCACTGATAACTGATAAGTTTAACATCTGACTATATGATTTTTACTAATGAATCTATTATGCAAATGTGATTTTAACATATTTTTTCTGTAAATCATTGCTGAGCAGGTTGAACTTCCACCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCGGATTGGTATTACGTGAGAGCTGGTTAGTTTCCCTTTTACTTCTTGTTGACTTCCTCGTATTCCATATAAAATGAGCTTAATTTTATTTCCATTTTGTATCTTCTGTTTGTGGGATTCTTATGATCGCCATTTCAAACTTTTCAGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGAGCCATTGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGGTGAGTACAAGCTTCTTAAGTTTAGCTTTTTCATTCAATTATGACCATTGCTATTCAATACAACCCTGTGTTTGCTTGTTTTCAATGCCGGTTTCTAATCATTTGTAACAACAATGTTATGTCGGGTTTGCAGTGGAAGGAGAATTACTTCAAGTGGTCGACGAGACCTTGATCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGATTGATCAATTACCTGTTTTGTTAATTATTAGAGACATATTTTGCTGATGAGATACAATTTCTTATGCGTCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCATATGAAGATGGTTACTCTTGTTTTCTCACGGGTTTTGAATGGTCTAAAGTTCATTTACTCGTCCTTTTTTATATATTTTTTCTGGGTTTTTAGTAAGAAAGATGTTTTCCATATTTTATCTACAATAACTTTGATGCTTGGCCTACATTATTTTTGCATTGAGTAATTTTATTCTTATCGAAGATCGGTTTCTCCTGCTATTAACTAATTTTTTTGAATTATAATTCACTCCGAAAACGTTCCTTTGGATAGTTAAATCTAAGCTCTTGCAAGTTTCCTTTTGTTTAAAGGTGGGGGTTGGATTTAAAAAGATTTGGTTATTGGACTGTTGCCATTGGTTATATGTTTCAAGTAAGATTATTAACCATCACGTGTTGATTTAGTGATAAATAAG

mRNA sequence

ATGCAAGTAGCTGTTTTAGCTGTGTTTGCAAATGAAATCATTCATAATCAGCTAAATTCAGAAGCTGCCATGGCAAAAAGTTTTGATGTGCACCGGTCGGGCACTTATCACTCTTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCAGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGACGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCACCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCGGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGAGCCATTGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACTTCAAGTGGTCGACGAGACCTTGATCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGATTGATCAATTACCTGTTTTGTTAATTATTAGAGACATATTTTGCTGATGAGATACAATTTCTTATGCGTCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCATATGAAGATGGTTACTCTTGTTTTCTCACGGGTTTTGAATGGTCTAAAGTTCATTTACTCGTCCTTTTTTATATATTTTTTCTGGGTTTTTAGTAAGAAAGATGTTTTCCATATTTTATCTACAATAACTTTGATGCTTGGCCTACATTATTTTTGCATTGAGTAATTTTATTCTTATCGAAGATCGGTTTCTCCTGCTATTAACTAATTTTTTTGAATTATAATTCACTCCGAAAACGTTCCTTTGGATAGTTAAATCTAAGCTCTTGCAAGTTTCCTTTTGTTTAAAGGTGGGGGTTGGATTTAAAAAGATTTGGTTATTGGACTGTTGCCATTGGTTATATGTTTCAAGTAAGATTATTAACCATCACGTGTTGATTTAGTGATAAATAAG

Coding sequence (CDS)

ATGCAAGTAGCTGTTTTAGCTGTGTTTGCAAATGAAATCATTCATAATCAGCTAAATTCAGAAGCTGCCATGGCAAAAAGTTTTGATGTGCACCGGTCGGGCACTTATCACTCTTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCAGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGACGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCACCATGGGCGGACATTGTGAAAACTGCAAGGTTCAAAGAGCTCGCTCCATATGATGCGGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGAGCCATTGCCCGTCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACTTCAAGTGGTCGACGAGACCTTGATCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Protein sequence

MQVAVLAVFANEIIHNQLNSEAAMAKSFDVHRSGTYHSSKTLEFEKGGNPSSAIGAFAGLCSLNSTAMATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Homology

[Close]

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-67
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-67
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVA 210
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRI 207
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.5e-63
Identity = 114/142 (80.28%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 67  AMATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAA 126
           A +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAA
Sbjct: 2   ADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAA 61

Query: 127 SMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPK 186
           S+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPK
Sbjct: 62  SIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPK 121

Query: 187 GGRRITSSGRRDLDQVAGRIVV 209
           GGR ITS GRRDLDQVAGR+ V
Sbjct: 122 GGRLITSQGRRDLDQVAGRVDV 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.8e-44
Identity = 75/134 (55.97%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 73  TVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASMARKI 132
           +VKDVS HEF +A+AA LK+SGK+++P W D VKT  FKEL+PY+ DWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 133 YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 192
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 193 SSGRRDLDQVAGRI 207
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL
Match: A0A5D3D4N1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2032G00080 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL
Match: A0A1S3BRB2 (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL
Match: A0A5A7T7J1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002520 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.2e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348.6 bits (893), Expect = 3.8e-92
Identity = 175/194 (90.21%), Postives = 177/194 (91.24%), Query Frame = 0


Query: 17  QLNSEAAMAKSFDVHRSGTYHSSKTLEFEKGGNPSSAIGAFAGLCSLNSTAMATARTVKD 76
           QLN E+             Y SSKTLEFEKGG+PSSAIGAFAGLCSLNSTAMATARTVKD
Sbjct: 491 QLNEESRELLKLTSKMCAAYQSSKTLEFEKGGSPSSAIGAFAGLCSLNSTAMATARTVKD 550

Query: 77  VSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAASMARKIYLRG 136
           VSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAASMARKIYLRG
Sbjct: 551 VSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRG 610

Query: 137 GLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGR 196
           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGR
Sbjct: 611 GLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGR 670

Query: 197 RDLDQVAGRIVVAP 211
           RDLDQVAGRIVVAP
Sbjct: 671 RDLDQVAGRIVVAP 684

[Close]

BLAST of Lsi02G022990 vs. NCBI nr
Match: XP_004148892.2 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo] >XP_038896797.1 40S ribosomal protein S19-3-like [Benincasa hispida] >KAA0064090.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN45368.2 hypothetical protein Csa_016233 [Cucumis sativus] >TYK18491.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 3.6e-74
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. NCBI nr
Match: XP_004141465.1 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >XP_038890519.1 40S ribosomal protein S19-3 [Benincasa hispida] >KAA0039442.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN52503.1 hypothetical protein Csa_008239 [Cucumis sativus] >TYK00631.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 7.9e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lsi02G022990 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-68
Identity = 119/143 (83.22%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVAP 211
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lsi02G022990 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-68
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP W DIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRIVVA 210
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lsi02G022990 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 68  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 127
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP W DIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 128 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 187
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 188 GRRITSSGRRDLDQVAGRI 207
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:

BLAST of Lsi02G022990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGA6	3.3e-67	83.22	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9FNP8	3.3e-67	84.51	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9LF30	1.4e-65	84.89	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	8.5e-63	80.28	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	6.8e-44	55.97	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of Lsi02G022990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4N1	1.6e-75	100.00	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BRB2	1.6e-75	100.00	40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=3 SV...	[more]
A0A6J1JTW8	1.7e-74	98.60	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	1.7e-74	98.60	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A5A7T7J1	2.2e-74	97.90	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Lsi02G022990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593129.1	3.8e-92	90.21	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_004148892.2	3.2e-75	100.00	40S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S rib...	[more]
XP_022954406.1	3.6e-74	98.60	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_004141465.1	4.6e-74	97.90	40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S rib...	[more]
XP_022923365.1	7.9e-74	97.90	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]

BLAST of Lsi02G022990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02080.1	2.4e-68	83.22	Ribosomal protein S19e family protein	[more]
AT5G61170.1	2.4e-68	84.51	Ribosomal protein S19e family protein	[more]
AT5G15520.1	1.0e-66	84.89	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 73..209 e-value: 1.3E-84 score: 297.1
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 73..207 e-value: 7.0E-56 score: 187.7
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 70..209
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 51..209 e-value: 5.4E-71 score: 239.5
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 70..209
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 157..176
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 73..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G022990.1	Lsi02G022990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome