Lsi02G022410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G022410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin-responsive protein
Location	chr02: 28862877 .. 28865689 (-)
RNA-Seq Expression	Lsi02G022410
Synteny	Lsi02G022410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATAATGAAATGCTAACATTACCCGTCGGTCATTTATCCCACAAAACTTGGAAGAGTCCACCTCACTTCACGCTCCACATGTCACAGTCTCACAAATCCCCCACCCCAAAACCCCCAATCCTTTAATAAAATAAAATAACCCACCTCACCGGCATGTAAGTTTAACACACAGCACCCCCTCTCACCGGCGGGTTATTTTGATCCTGTTTCTATTATTATAACCACATACAAAACCCAACCAAACAAAAAAGCTCTACCCTTTCCACTCATAATTCAAATAGAAGAGAGAAAAAAATTCATGGAGAAGAAGAAGATGGGATTTGAAGAGACGGAGCTCCGGCTAGGTCTACCCGGAAATAACAACAACAACAACGTCGGGAGCGGTGGCGAATCGGGAGAGGTGGCGGCTCGGAAACGAGGCTTTGCTGAAACTGTCAGCAGTGAGACCATTTCTAAGGTTGATCTCATGCTCAATCTTTCTTCAAAAGAAACCCTCGGCAACGACGACGTTGCCACTGATTCCAACCCCGGCAACAAAGACAAAACCATTCTCACTACCGATCCGGCCAAACCTCCGGCTAAGTAAACTCAATTATGTCATTCTGTTTCGAAAGAAAAATTATTTAATGTGATCGCTATAAAGATGGGAAGGATTCGTAGTTAGATTGAATTTTTTTTGTTCTTATTTTCCAGTCTCCTTGAATAATTTCTCGTGTTTTTGTGGATTGTGTAGGGCACAAGTTGTGGGATGGCCACCCGTTCGATCGTTCCGAAAGAATAACATGTTGGCGTTCGTGAAAGTAAGCATGGATGGCGCGCCATATCTGCGTAAAGTCGACTTGAAGATGTACAAGAGCTACAAACAACTCTCTGATGCTCTTGCTGCCATGTTTGGCTCCTTCACCACCATTGGTAAGCTCATATAATTAAGCAAAATTTTACGAAAGTCCATCGAAAAAAATTATTCAATGAAGTTGCCATAATAAATGTAATAGGTTTCCTCGTAGTAATAGAGACAAATTTAAGTTTGATCATGTTCTTATTTTTCATACATTCAACAGTGAAAAACTGTCAGTCACATTATAACAGTCTCATCGAATAATTTCACTTGTCGATATTACTTCTCTTCTTTACTTATTCACTTCTTTGATGACCTTTTGAATTCGAGTTTTTTTTTTATATATTTTTTGAGGTAATTGTGGATCTCAAGAAATGAAGGATTTCATGAACGAGAGTAAGTTGATGGATCTTTTGAGTGGCTCTGATTATGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGAGTAAGTTTTAGTATTTGTTTGGAGCCAAAGTTTTAGTATTTGTTTGGAGCCATTAATTTTAATGTCGATATCATAAACCTATCTTTTAATTCCTTTATTTTGACAAACATAGGATGTTTGTTGAATCTTGCAAACGTCTACGCATCATGAAAGGAAAGGAGGCTATTGGACTTGGTATGTATTTTCTTATCTTATTTTTTTTCTTGTCTAAAATCTTCTCAATCTTAGAACAAGATTTTAAGGCTTTTTTTTTCTTGCTTTTTCAAATATCAGTTGTTAGTTGAATTATGAATACTATAGGTAGTTTATACAAACCCAATGAATTTAGATGTATGATTAATAGTTTTCAGTTACTTTAAAAAAAAAATAATAATAAGGTAGTTGTAAGAATAGAAAATTAATAAACTACCACTAGTCTTTAAAAAAAGGGTTAGAATATAGAATTTTTATTTATTTGTTTATTATAGTTATATATTTTCCTTCACTTGTGAGTTAAAATGATATAAAATGATCAAGATCTTATGCAATTAATAATGTTATAATATAAAAATGAGTGTTGAATCTAAGAGCATAACTAATAAGTTAGGGTAGGTTAAATTATAACCATTTTAGGTCATTTTATAGCTTGTGTTTGTTATAAATTTGATTTTTATAGTTTAGTTAAAATTTCTAAAATATTATAGCATTTTTATTAAAATGTTAGGGTGACATGGAAAAAAAACTTTGTAACAAAGGCACCGACTCTAAGTACATAGTTTATGTACGACCCAACCACTAACAAATTTGACCAATTTTCTATCCCTACTTCTTCTAGATTCTTGACAACGCCTATCTTTATCTCTTACCTACAGTTTTTACTGATAATGTTAACGTTTGATACGATGAAGACTTTTTTGAGAAATTTATTTAACAAAACTCTTGGGATAGATATAGTCATTTTTACTTCTATAGGACTAAATTGGAAATTTAATCATTAGGGTAAATTCAATCTTTTGAGAATAATCATTTTTAAAAAAAAAATGTATATATATTTATGTAAAATGTATTTATGTTCTAAATGATACATAAATCATTCATTTCAGCACCAAGGGCTATGGAGAAATGCAAGAACAGAAGTTAAACAAGAAAAGCTAAAGCCAGCTTCATAGTCTGCAGCTTCTCTCGATTCAATCTCCAATCTTAACTTATCCTAATTATCGAAACATCGATAATTTAGAAAAAGTTTAGATTCAGATAAAAGATTTGAGAAAAGAATGCAGGTTGTTTGTTCGGGTGTTTCATATATATGATTAAGTTGTAATATTATTCTATACCAAGATGTGAAAACCCTTTTAAGTGGTAGTTTTATATTTGTCATATCCATACTTATTTGTTTTAAGTTCCAAGACTTGGCTTGATATTTGTCTAACAACATTTGTTTAAGTATGGCTGGATTTGGGTTTTTTAAATAATATAAAATCCATGTTTGCTTGTAGTTATATAT

mRNA sequence

TTTATAATGAAATGCTAACATTACCCGTCGGTCATTTATCCCACAAAACTTGGAAGAGTCCACCTCACTTCACGCTCCACATGTCACAGTCTCACAAATCCCCCACCCCAAAACCCCCAATCCTTTAATAAAATAAAATAACCCACCTCACCGGCATGTAAGTTTAACACACAGCACCCCCTCTCACCGGCGGGTTATTTTGATCCTGTTTCTATTATTATAACCACATACAAAACCCAACCAAACAAAAAAGCTCTACCCTTTCCACTCATAATTCAAATAGAAGAGAGAAAAAAATTCATGGAGAAGAAGAAGATGGGATTTGAAGAGACGGAGCTCCGGCTAGGTCTACCCGGAAATAACAACAACAACAACGTCGGGAGCGGTGGCGAATCGGGAGAGGTGGCGGCTCGGAAACGAGGCTTTGCTGAAACTGTCAGCAGTGAGACCATTTCTAAGGTTGATCTCATGCTCAATCTTTCTTCAAAAGAAACCCTCGGCAACGACGACGTTGCCACTGATTCCAACCCCGGCAACAAAGACAAAACCATTCTCACTACCGATCCGGCCAAACCTCCGGCTAAGGCACAAGTTGTGGGATGGCCACCCGTTCGATCGTTCCGAAAGAATAACATGTTGGCGTTCGTGAAAGTAAGCATGGATGGCGCGCCATATCTGCGTAAAGTCGACTTGAAGATGTACAAGAGCTACAAACAACTCTCTGATGCTCTTGCTGCCATGTTTGGCTCCTTCACCACCATTGGTAAGCTCATATAATTAAGCAAAATTTTACGAAAGTCCATCGAAAAAAATTATTCAATGAAGTTGCCATAATAAATGTAATAGGTTTCCTCGTAGTAATAGAGACAAATTTAAGTTTGATCATGTTCTTATTTTTCATACATTCAACAGTGAAAAACTGTCAGTCACATTATAACAGTCTCATCGAATAATTTCACTTGTCGATATTACTTCTCTTCTTTACTTATTCACTTCTTTGATGACCTTTTGAATTCGAGTTTTTTTTTTATATATTTTTTGAGGTAATTGTGGATCTCAAGAAATGAAGGATTTCATGAACGAGAGTAAGTTGATGGATCTTTTGAGTGGCTCTGATTATGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGAGATGTTTGTTGAATCTTGCAAACGTCTACGCATCATGAAAGGAAAGGAGGCTATTGGACTTGCACCAAGGGCTATGGAGAAATGCAAGAACAGAAGTTAAACAAGAAAAGCTAAAGCCAGCTTCATAGTCTGCAGCTTCTCTCGATTCAATCTCCAATCTTAACTTATCCTAATTATCGAAACATCGATAATTTAGAAAAAGTTTAGATTCAGATAAAAGATTTGAGAAAAGAATGCAGGTTGTTTGTTCGGGTGTTTCATATATATGATTAAGTTGTAATATTATTCTATACCAAGATGTGAAAACCCTTTTAAGTGGTAGTTTTATATTTGTCATATCCATACTTATTTGTTTTAAGTTCCAAGACTTGGCTTGATATTTGTCTAACAACATTTGTTTAAGTATGGCTGGATTTGGGTTTTTTAAATAATATAAAATCCATGTTTGCTTGTAGTTATATAT

Coding sequence (CDS)

ATGGAGAAGAAGAAGATGGGATTTGAAGAGACGGAGCTCCGGCTAGGTCTACCCGGAAATAACAACAACAACAACGTCGGGAGCGGTGGCGAATCGGGAGAGGTGGCGGCTCGGAAACGAGGCTTTGCTGAAACTGTCAGCAGTGAGACCATTTCTAAGGTTGATCTCATGCTCAATCTTTCTTCAAAAGAAACCCTCGGCAACGACGACGTTGCCACTGATTCCAACCCCGGCAACAAAGACAAAACCATTCTCACTACCGATCCGGCCAAACCTCCGGCTAAGGCACAAGTTGTGGGATGGCCACCCGTTCGATCGTTCCGAAAGAATAACATGTTGGCGTTCGTGAAAGTAAGCATGGATGGCGCGCCATATCTGCGTAAAGTCGACTTGAAGATGTACAAGAGCTACAAACAACTCTCTGATGCTCTTGCTGCCATGTTTGGCTCCTTCACCACCATTGGTAAGCTCATATAA

Protein sequence

MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLSSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIGKLI

Homology

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BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot
Match: P13089 (Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-38
Identity = 97/171 (56.73%), Postives = 110/171 (64.33%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVS---SETISKVDLMLNLSS 65
           MGFEETELRLGLPGN         G + EV  RKRGF+ET +    E+ + VDLMLNLSS
Sbjct: 1   MGFEETELRLGLPGN---------GGTEEVLIRKRGFSETETGHEDESATTVDLMLNLSS 60

Query: 66  KETLGNDDVATDSNPGN----KDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM------ 125
           KE       A D    +    K+KT+L  DPAKPPAK QVVGWPPVRSFRKN +      
Sbjct: 61  KEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSV 120

Query: 126 -----------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                       +FVKVSMDGAPYLRKVDLKMYKSY++LSD+L  MF SFT
Sbjct: 121 GEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFT 162

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BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot
Match: Q38832 (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 91/165 (55.15%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLSSKET 65
           M  +ETEL LGLPG      V S  +SG     KRGF+ET        VDL LNL S + 
Sbjct: 1   MNLKETELCLGLPG--GTETVESPAKSG--VGNKRGFSET--------VDLKLNLQSNKQ 60

Query: 66  LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM------------- 125
            G+ D+ T+  P  K+KT L  DP+KPPAKAQVVGWPPVR++RKN M             
Sbjct: 61  -GHVDLNTNGAP--KEKTFL-KDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMS 120

Query: 126 -----LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                +AFVKVSMDGAPYLRKVDLKMY SYK LSDALA MF SFT
Sbjct: 121 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFT 149

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BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot
Match: P93830 (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 85/168 (50.60%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           M   ++   ETEL LGLPG         G     V   KRGF+ET        VDL LNL
Sbjct: 2   MGSVELNLRETELCLGLPG---------GDTVAPVTGNKRGFSET--------VDLKLNL 61

Query: 61  ----SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNML--- 120
               ++KE     DV T     +K+K+    DPAKPPAKAQVVGWPPVRS+RKN M+   
Sbjct: 62  NNEPANKEGSTTHDVVTFD---SKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQ 121

Query: 121 ---------AFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                    AFVKVSMDGAPYLRK+DL+MYKSY +LS+AL+ MF SFT
Sbjct: 122 KSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFT 149

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BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot
Match: Q38825 (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.7e-27
Identity = 87/178 (48.88%), Postives = 98/178 (55.06%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAAR-----KRGFAETVSSETISKVDLMLNL 65
           M  + TEL LGLPG         G E+ E  A+     KRGF+ET        VDLMLNL
Sbjct: 6   MNLKATELCLGLPG---------GAEAVESPAKSAVGSKRGFSET--------VDLMLNL 65

Query: 66  SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM-------- 125
            S +    D     + P  K+KT L  DP+KPPAKAQVVGWPPVR++RKN M        
Sbjct: 66  QSNKEGSVDLKNVSAVP--KEKTTL-KDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSG 125

Query: 126 ------------------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                                VKVSMDGAPYLRKVDLKMYKSY+ LSDALA MF SFT
Sbjct: 126 AEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFT 163

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BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot
Match: O24407 (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 83/179 (46.37%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLSSKET 65
           + FE TELRLGLPG N+      GGE       KRGF+ET        VDL LNLSS   
Sbjct: 2   INFEATELRLGLPGGNH------GGEMAGKNNGKRGFSET--------VDLKLNLSS--- 61

Query: 66  LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM------------- 125
              D V+       K+K +      KPPAKAQVVGWPPVRSFRKN M             
Sbjct: 62  TAMDSVSKVDLENMKEKVV------KPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEG 121

Query: 126 -------------------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                              +A+VKVSMDGAPYLRK+DLK+YK+Y+ LS+AL+ MF SFT
Sbjct: 122 NDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFT 157

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BLAST of Lsi02G022410 vs. ExPASy TrEMBL
Match: A0A6J1GP39 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111455854 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 2   EKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLS 61
           EKKKM FEETELRLGLPGNNNNNN G GGESGE+ ARKRGFAETVSSETISKVDL LNLS
Sbjct: 3   EKKKMEFEETELRLGLPGNNNNNNGGGGGESGEITARKRGFAETVSSETISKVDLKLNLS 62

Query: 62  SKETLGNDD-VATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 121
           SKE  G+DD VA D NP N DK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 63  SKEATGDDDGVAADRNPRNDDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 122

Query: 122 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 155
           DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI
Sbjct: 123 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 156

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BLAST of Lsi02G022410 vs. ExPASy TrEMBL
Match: A0A1S3BQH5 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492619 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.9e-66
Identity = 141/157 (89.81%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKKKMGFEETELRLGLPG   NNNVGS GESGEVAARKRGFAETVSSETISKVDL LNL
Sbjct: 1   MEKKKMGFEETELRLGLPG---NNNVGS-GESGEVAARKRGFAETVSSETISKVDLKLNL 60

Query: 61  SSKET--LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120
           SSKET  +G DDV  +SNP NKDK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV
Sbjct: 61  SSKETVGVGGDDVVANSNPSNKDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120

Query: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG
Sbjct: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 153

[Close]

BLAST of Lsi02G022410 vs. ExPASy TrEMBL
Match: Q9XIV0 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G378520 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 138/157 (87.90%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKKKMGFEETELRLGLPG   NNN+GS  E GEVAARKRGFAETVSSETISKVDL LNL
Sbjct: 1   MEKKKMGFEETELRLGLPG---NNNIGS-SELGEVAARKRGFAETVSSETISKVDLKLNL 60

Query: 61  SSKET--LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120
           SSKET  +G+DD+  DSNP NKDK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV
Sbjct: 61  SSKETVGVGDDDLVADSNPSNKDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120

Query: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG
Sbjct: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 153

[Close]

BLAST of Lsi02G022410 vs. ExPASy TrEMBL
Match: A0A6J1JUD0 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111487977 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 134/154 (87.01%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 2   EKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLS 61
           EKKKM FEETELRLGLPGNNNNNN G GGESGE+ ARKRGF ETVSSE ISKVDL LNLS
Sbjct: 3   EKKKMEFEETELRLGLPGNNNNNNGGGGGESGEITARKRGFVETVSSENISKVDLKLNLS 62

Query: 62  SKETLGNDD-VATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 121
           SKE   +DD VA D NP N DK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 63  SKEATRDDDGVAADRNPRNDDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 122

Query: 122 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 155
           DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI
Sbjct: 123 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 156

[Close]

BLAST of Lsi02G022410 vs. ExPASy TrEMBL
Match: A0A6J1H6W3 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461038 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.4e-62
Identity = 131/155 (84.52%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKK MGFEETELRLGLPGN+     G GGESG+V ARKRGFAETVSS+TISKVDL LNL
Sbjct: 1   MEKKNMGFEETELRLGLPGNSGGG--GGGGESGDVGARKRGFAETVSSDTISKVDLKLNL 60

Query: 61  SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 120
           SSKE  GN DV  D + GNKDKT L TDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 61  SSKEAAGN-DVVVDPSSGNKDKTALVTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 120

Query: 121 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           DGAPYLRKVDLKMYKSYKQLSD LA MFGSFTTIG
Sbjct: 121 DGAPYLRKVDLKMYKSYKQLSDGLATMFGSFTTIG 152

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BLAST of Lsi02G022410 vs. NCBI nr
Match: XP_038896928.1 (auxin-induced protein AUX28-like [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.1e-67
Identity = 142/155 (91.61%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKKKMGFEETELRLGLPG   NNN+GS GE GEVAARKRGFAETVSSETISKVDL LNL
Sbjct: 1   MEKKKMGFEETELRLGLPG---NNNIGS-GELGEVAARKRGFAETVSSETISKVDLKLNL 60

Query: 61  SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 120
           SSKET+ +DDVA DSNPGNKDKT+LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 61  SSKETV-DDDVAIDSNPGNKDKTVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 120

Query: 121 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG
Sbjct: 121 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 150

[Close]

BLAST of Lsi02G022410 vs. NCBI nr
Match: XP_022953249.1 (auxin-induced protein AUX28-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 2   EKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLS 61
           EKKKM FEETELRLGLPGNNNNNN G GGESGE+ ARKRGFAETVSSETISKVDL LNLS
Sbjct: 3   EKKKMEFEETELRLGLPGNNNNNNGGGGGESGEITARKRGFAETVSSETISKVDLKLNLS 62

Query: 62  SKETLGNDD-VATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 121
           SKE  G+DD VA D NP N DK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 63  SKEATGDDDGVAADRNPRNDDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 122

Query: 122 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 155
           DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI
Sbjct: 123 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 156

[Close]

BLAST of Lsi02G022410 vs. NCBI nr
Match: XP_008451270.1 (PREDICTED: auxin-induced protein AUX28-like [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 6.0e-66
Identity = 141/157 (89.81%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKKKMGFEETELRLGLPG   NNNVGS GESGEVAARKRGFAETVSSETISKVDL LNL
Sbjct: 1   MEKKKMGFEETELRLGLPG---NNNVGS-GESGEVAARKRGFAETVSSETISKVDLKLNL 60

Query: 61  SSKET--LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120
           SSKET  +G DDV  +SNP NKDK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV
Sbjct: 61  SSKETVGVGGDDVVANSNPSNKDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120

Query: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG
Sbjct: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 153

[Close]

BLAST of Lsi02G022410 vs. NCBI nr
Match: NP_001267662.1 (auxin-induced protein AUX28-like [Cucumis sativus] >KGN44763.1 hypothetical protein Csa_016200 [Cucumis sativus] >BAA81687.1 unnamed protein product [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 8.6e-65
Identity = 138/157 (87.90%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           MEKKKMGFEETELRLGLPG   NNN+GS  E GEVAARKRGFAETVSSETISKVDL LNL
Sbjct: 1   MEKKKMGFEETELRLGLPG---NNNIGS-SELGEVAARKRGFAETVSSETISKVDLKLNL 60

Query: 61  SSKET--LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120
           SSKET  +G+DD+  DSNP NKDK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV
Sbjct: 61  SSKETVGVGDDDLVADSNPSNKDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKV 120

Query: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 156
           SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG
Sbjct: 121 SMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTIG 153

[Close]

BLAST of Lsi02G022410 vs. NCBI nr
Match: KAG6575944.1 (Auxin-induced protein AUX28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-64
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   EKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLS 61
           EKKKM FEETELRLGLPGNNNNNN   GGESGE+ ARKRGFAETVSSETISKVDL LNLS
Sbjct: 3   EKKKMEFEETELRLGLPGNNNNNN--GGGESGEITARKRGFAETVSSETISKVDLKLNLS 62

Query: 62  SKETLGNDD-VATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 121
           SKE  G+DD VA D NP N DK +LT DPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM
Sbjct: 63  SKEATGDDDGVAADRNPRNNDKAVLTADPAKPPAKAQVVGWPPVRSFRKNNMLAFVKVSM 122

Query: 122 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 155
           DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI
Sbjct: 123 DGAPYLRKVDLKMYKSYKQLSDALAAMFGSFTTI 154

[Close]

BLAST of Lsi02G022410 vs. TAIR 10
Match: AT4G14550.1 (indole-3-acetic acid inducible 14 )

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 91/165 (55.15%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLSSKET 65
           M  +ETEL LGLPG      V S  +SG     KRGF+ET        VDL LNL S + 
Sbjct: 1   MNLKETELCLGLPG--GTETVESPAKSG--VGNKRGFSET--------VDLKLNLQSNKQ 60

Query: 66  LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM------------- 125
            G+ D+ T+  P  K+KT L  DP+KPPAKAQVVGWPPVR++RKN M             
Sbjct: 61  -GHVDLNTNGAP--KEKTFL-KDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMS 120

Query: 126 -----LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                +AFVKVSMDGAPYLRKVDLKMY SYK LSDALA MF SFT
Sbjct: 121 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFT 149

[Close]

BLAST of Lsi02G022410 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 85/168 (50.60%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 1   MEKKKMGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNL 60
           M   ++   ETEL LGLPG         G     V   KRGF+ET        VDL LNL
Sbjct: 2   MGSVELNLRETELCLGLPG---------GDTVAPVTGNKRGFSET--------VDLKLNL 61

Query: 61  ----SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNML--- 120
               ++KE     DV T     +K+K+    DPAKPPAKAQVVGWPPVRS+RKN M+   
Sbjct: 62  NNEPANKEGSTTHDVVTFD---SKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQ 121

Query: 121 ---------AFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                    AFVKVSMDGAPYLRK+DL+MYKSY +LS+AL+ MF SFT
Sbjct: 122 KSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFT 149

[Close]

BLAST of Lsi02G022410 vs. TAIR 10
Match: AT3G23050.2 (indole-3-acetic acid 7 )

HSP 1 Score: 121.3 bits (303), Expect = 6.9e-28
Identity = 87/178 (48.88%), Postives = 98/178 (55.06%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAAR-----KRGFAETVSSETISKVDLMLNL 65
           M  + TEL LGLPG         G E+ E  A+     KRGF+ET        VDLMLNL
Sbjct: 6   MNLKATELCLGLPG---------GAEAVESPAKSAVGSKRGFSET--------VDLMLNL 65

Query: 66  SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM-------- 125
            S +    D     + P  K+KT L  DP+KPPAKAQVVGWPPVR++RKN M        
Sbjct: 66  QSNKEGSVDLKNVSAVP--KEKTTL-KDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSG 125

Query: 126 ------------------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                                VKVSMDGAPYLRKVDLKMYKSY+ LSDALA MF SFT
Sbjct: 126 AEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFT 163

[Close]

BLAST of Lsi02G022410 vs. TAIR 10
Match: AT3G23050.1 (indole-3-acetic acid 7 )

HSP 1 Score: 121.3 bits (303), Expect = 6.9e-28
Identity = 87/178 (48.88%), Postives = 98/178 (55.06%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAAR-----KRGFAETVSSETISKVDLMLNL 65
           M  + TEL LGLPG         G E+ E  A+     KRGF+ET        VDLMLNL
Sbjct: 6   MNLKATELCLGLPG---------GAEAVESPAKSAVGSKRGFSET--------VDLMLNL 65

Query: 66  SSKETLGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM-------- 125
            S +    D     + P  K+KT L  DP+KPPAKAQVVGWPPVR++RKN M        
Sbjct: 66  QSNKEGSVDLKNVSAVP--KEKTTL-KDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSG 125

Query: 126 ------------------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                                VKVSMDGAPYLRKVDLKMYKSY+ LSDALA MF SFT
Sbjct: 126 AEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFT 163

[Close]

BLAST of Lsi02G022410 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27
Identity = 83/179 (46.37%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 6   MGFEETELRLGLPGNNNNNNVGSGGESGEVAARKRGFAETVSSETISKVDLMLNLSSKET 65
           + FE TELRLGLPG N+      GGE       KRGF+ET        VDL LNLSS   
Sbjct: 2   INFEATELRLGLPGGNH------GGEMAGKNNGKRGFSET--------VDLKLNLSS--- 61

Query: 66  LGNDDVATDSNPGNKDKTILTTDPAKPPAKAQVVGWPPVRSFRKNNM------------- 125
              D V+       K+K +      KPPAKAQVVGWPPVRSFRKN M             
Sbjct: 62  TAMDSVSKVDLENMKEKVV------KPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEG 121

Query: 126 -------------------LAFVKVSMDGAPYLRKVDLKMYKSYKQLSDALAAMFGSFT 153
                              +A+VKVSMDGAPYLRK+DLK+YK+Y+ LS+AL+ MF SFT
Sbjct: 122 NDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFT 157

The following BLAST results are available for this feature:

BLAST of Lsi02G022410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13089	1.4e-38	56.73	Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1	[more]
Q38832	1.4e-30	55.15	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=...	[more]
P93830	2.1e-29	50.60	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=...	[more]
Q38825	9.7e-27	48.88	Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1	[more]
O24407	2.2e-26	46.37	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=...	[more]

BLAST of Lsi02G022410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GP39	1.7e-66	88.96	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111455854 PE=3 SV=1	[more]
A0A1S3BQH5	2.9e-66	89.81	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492619 PE=3 SV=1	[more]
Q9XIV0	4.2e-65	87.90	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G378520 PE=2 SV=1	[more]
A0A6J1JUD0	1.6e-64	87.01	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111487977 PE=3 SV=1	[more]
A0A6J1H6W3	7.4e-62	84.52	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461038 PE=3 SV=1	[more]

BLAST of Lsi02G022410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896928.1	7.1e-67	91.61	auxin-induced protein AUX28-like [Benincasa hispida]	[more]
XP_022953249.1	3.5e-66	88.96	auxin-induced protein AUX28-like [Cucurbita moschata]	[more]
XP_008451270.1	6.0e-66	89.81	PREDICTED: auxin-induced protein AUX28-like [Cucumis melo]	[more]
NP_001267662.1	8.6e-65	87.90	auxin-induced protein AUX28-like [Cucumis sativus] >KGN44763.1 hypothetical prot...	[more]
KAG6575944.1	1.9e-64	88.31	Auxin-induced protein AUX28, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi02G022410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14550.1	1.0e-31	55.15	indole-3-acetic acid inducible 14	[more]
AT1G04250.1	1.5e-30	50.60	AUX/IAA transcriptional regulator family protein	[more]
AT3G23050.2	6.9e-28	48.88	indole-3-acetic acid 7	[more]
AT3G23050.1	6.9e-28	48.88	indole-3-acetic acid 7	[more]
AT3G04730.1	1.5e-27	46.37	indoleacetic acid-induced protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 114..153 e-value: 9.2E-18 score: 65.0 coord: 10..112 e-value: 2.7E-15 score: 56.9
None	No IPR available	GENE3D	3.10.20.90		coord: 108..157 e-value: 9.1E-15 score: 56.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..83
None	No IPR available	PANTHER	PTHR31734:SF113	AUXIN-INDUCED PROTEIN AUX28	coord: 4..156
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 114..154
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 4..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G022410.1	Lsi02G022410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus