Lsi02G022340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G022340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHexosyltransferase
Locationchr02: 28779928 .. 28780299 (+)
RNA-Seq ExpressionLsi02G022340
SyntenyLsi02G022340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTCTTCGTCGATGCCAGAGGATTCTGATCCTCTCTTTGCTTTCTCTCTCTGTTATTGCTCCTTTGGTTCTCGTTTCTCACCGTCTCAAGACCATCACTTCTATTGGTTCGTTTTATTTTTCTCCTCTTCTGTTGTTTTTCTTGTTGACTACTGAATGTAAGACGACGAGGGTGTGTTTTCGTTTTGGAGTTAATGTGTTCTTTTCTTGGGTTTTGCCTTTTGGTTTGATTGATTTGGTTGGTTGGTTTGATTCAGGGCGGAAGGAGTTCATCGATGATATATCGAGCAGGGTATGGCTGTTGTTCTTTAAATTTGAGTTTTATTTTATTCTATTTTTTATTTTTTTTAGTTTGTCAGGTGAATGA

mRNA sequence

ATGAAGCTTCTTCGTCGATGCCAGAGGATTCTGATCCTCTCTTTGCTTTCTCTCTCTGTTATTGCTCCTTTGGTTCTCGTTTCTCACCGTCTCAAGACCATCACTTCTATTGGTTCGTTTTATTTTTCTCCTCTTCTGTTGTTTTTCTTGTTGACTACTGAATGGCGGAAGGAGTTCATCGATGATATATCGAGCAGGGTATGGCTGTTGTTCTTTAAATTTGAGTTTTATTTTATTCTATTTTTTATTTTTTTTAGTTTGTCAGGTGAATGA

Coding sequence (CDS)

ATGAAGCTTCTTCGTCGATGCCAGAGGATTCTGATCCTCTCTTTGCTTTCTCTCTCTGTTATTGCTCCTTTGGTTCTCGTTTCTCACCGTCTCAAGACCATCACTTCTATTGGTTCGTTTTATTTTTCTCCTCTTCTGTTGTTTTTCTTGTTGACTACTGAATGGCGGAAGGAGTTCATCGATGATATATCGAGCAGGGTATGGCTGTTGTTCTTTAAATTTGAGTTTTATTTTATTCTATTTTTTATTTTTTTTAGTTTGTCAGGTGAATGA

Protein sequence

MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFIDDISSRVWLLFFKFEFYFILFFIFFSLSGE
Homology
[Close]
BLAST of Lsi02G022340 vs. ExPASy Swiss-Prot
Match: Q9M9Y5 (Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=GAUT6 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.7e-05
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MK +RR QRILIL+LLS+SV APL+ VS+RLK+IT +G                 R+EFI
Sbjct: 1  MKQIRRWQRILILALLSISVFAPLIFVSNRLKSITPVG-----------------RREFI 47

Query: 61 DDIS 65
          +++S
Sbjct: 61 EELS 47

[Close]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match: A0A5A7UWY8 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001670 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APL+LVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLILVSHRLKTITSIG-----------------RREFI 48

Query: 61 DDISS 66
          DD+ S
Sbjct: 61 DDLWS 48

[Close]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match: A0A5D3DRA5 (Putative galacturonosyltransferase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00670 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APL+LVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLILVSHRLKTITSIG-----------------RREFI 48

Query: 61 DDISS 66
          DD+ S
Sbjct: 61 DDLWS 48

[Close]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match: A0A1S3BS75 (Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103492628 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APL+LVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLILVSHRLKTITSIG-----------------RREFI 48

Query: 61 DDISS 66
          DD+ S
Sbjct: 61 DDLWS 48

[Close]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match: A0A0A0K5H8 (Hexosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_7G378420 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MK LRRCQRILILSLLSLSV+APL+LVSHRLKTITSIG                 ++EFI
Sbjct: 1  MKFLRRCQRILILSLLSLSVLAPLILVSHRLKTITSIG-----------------QREFI 49

Query: 61 DDISSR 67
          DD+ SR
Sbjct: 61 DDLWSR 49

[Close]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match: A0A6J1DSV7 (Hexosyltransferase OS=Momordica charantia OX=3673 GN=LOC111022851 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APLVLVS RLKTITS G                 R++FI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLVLVSQRLKTITSFG-----------------RRDFI 49

Query: 61 DDISSR 67
          +DISS+
Sbjct: 61 EDISSK 49

[Close]
BLAST of Lsi02G022340 vs. NCBI nr
Match: XP_038900192.1 (probable galacturonosyltransferase 6 isoform X3 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APLVLVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLVLVSHRLKTITSIG-----------------RREFI 49

Query: 61 DDISSR 67
          DD+SSR
Sbjct: 61 DDLSSR 49

[Close]
BLAST of Lsi02G022340 vs. NCBI nr
Match: XP_038900195.1 (probable galacturonosyltransferase 5 isoform X5 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APLVLVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLVLVSHRLKTITSIG-----------------RREFI 49

Query: 61 DDISSR 67
          DD+SSR
Sbjct: 61 DDLSSR 49

[Close]
BLAST of Lsi02G022340 vs. NCBI nr
Match: XP_038900191.1 (probable galacturonosyltransferase 6 isoform X2 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APLVLVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLVLVSHRLKTITSIG-----------------RREFI 49

Query: 61 DDISSR 67
          DD+SSR
Sbjct: 61 DDLSSR 49

[Close]
BLAST of Lsi02G022340 vs. NCBI nr
Match: XP_038900190.1 (probable galacturonosyltransferase 5 isoform X1 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APLVLVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLVLVSHRLKTITSIG-----------------RREFI 49

Query: 61 DDISSR 67
          DD+SSR
Sbjct: 61 DDLSSR 49

[Close]
BLAST of Lsi02G022340 vs. NCBI nr
Match: XP_008451287.1 (PREDICTED: probable galacturonosyltransferase 6 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MKLLRRCQRILILSLLSLSV+APL+LVSHRLKTITSIG                 R+EFI
Sbjct: 1  MKLLRRCQRILILSLLSLSVLAPLILVSHRLKTITSIG-----------------RREFI 48

Query: 61 DDISS 66
          DD+ S
Sbjct: 61 DDLWS 48

[Close]
BLAST of Lsi02G022340 vs. TAIR 10
Match: AT1G06780.2 (galacturonosyltransferase 6 )

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MK +RR QRILIL+LLS+SV APL+ VS+RLK+IT +G F     LL FL +   R+EFI
Sbjct: 1  MKQIRRWQRILILALLSISVFAPLIFVSNRLKSITPVGQF----RLLSFLFSFHCRREFI 60

Query: 61 DDIS 65
          +++S
Sbjct: 61 EELS 60

[Close]
BLAST of Lsi02G022340 vs. TAIR 10
Match: AT1G06780.1 (galacturonosyltransferase 6 )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSIGSFYFSPLLLFFLLTTEWRKEFI 60
          MK +RR QRILIL+LLS+SV APL+ VS+RLK+IT +G                 R+EFI
Sbjct: 1  MKQIRRWQRILILALLSISVFAPLIFVSNRLKSITPVG-----------------RREFI 47

Query: 61 DDIS 65
          +++S
Sbjct: 61 EELS 47

[Close]
BLAST of Lsi02G022340 vs. TAIR 10
Match: AT2G30575.1 (los glycosyltransferase 5 )

HSP 1 Score: 43.9 bits (102), Expect = 7.9e-05
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MKLLRRCQRILILSLLSLSVIAPLVLVSHRLKTITSI 38
          M  +RR QRILILSLL LSV+AP+V VS+RLK+ITS+
Sbjct: 1  MNQVRRWQRILILSLLLLSVLAPIVFVSNRLKSITSV 37

The following BLAST results are available for this feature:
BLAST of Lsi02G022340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M9Y52.7e-0548.44Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=GAUT6 PE... [more]
BLAST of Lsi02G022340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UWY87.0e-0966.15Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00... [more]
A0A5D3DRA57.0e-0966.15Putative galacturonosyltransferase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS757.0e-0966.15Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103492628 PE=3 SV=1[more]
A0A0A0K5H81.2e-0863.64Hexosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_7G378420 PE=3 SV=1[more]
A0A6J1DSV73.5e-0863.64Hexosyltransferase OS=Momordica charantia OX=3673 GN=LOC111022851 PE=3 SV=1[more]
BLAST of Lsi02G022340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900192.13.5e-1069.70probable galacturonosyltransferase 6 isoform X3 [Benincasa hispida][more]
XP_038900195.13.5e-1069.70probable galacturonosyltransferase 5 isoform X5 [Benincasa hispida][more]
XP_038900191.13.5e-1069.70probable galacturonosyltransferase 6 isoform X2 [Benincasa hispida][more]
XP_038900190.13.5e-1069.70probable galacturonosyltransferase 5 isoform X1 [Benincasa hispida][more]
XP_008451287.11.5e-0866.15PREDICTED: probable galacturonosyltransferase 6 [Cucumis melo][more]
BLAST of Lsi02G022340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G06780.23.1e-0956.25galacturonosyltransferase 6 [more]
AT1G06780.11.9e-0648.44galacturonosyltransferase 6 [more]
AT2G30575.17.9e-0570.27los glycosyltransferase 5 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G022340.1Lsi02G022340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016020 membrane
molecular_function GO:0016757 glycosyltransferase activity