Lsi02G021740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G021740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LOB domain-containing protein
Location	chr02: 28249775 .. 28250557 (+)
RNA-Seq Expression	Lsi02G021740
Synteny	Lsi02G021740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAGTCCCATCAATGGCAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCACCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAGGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCGATCTCCCACCGTTTCGAAGCGGCGGTGACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTAATTAATACGTAAACTAAATTATCACTTATCAACTTAAATTTTTTAGATTAGATGATAATTTATCTTAATTTTTGAAGAGAAATAAAACGATGAAATTTATTTGAACTCGTAAGCTTAAACTTTTGGGTTTCTGTTTGTTTATTCGAAACCCTAATTTTCGAAAATGATTTTTGATGATTATTTGAATGGTTGAGAAAATGATAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACAATACAAGAAACCCTATTGAATTACCTTACGAAAGTTCTCCATTTTATTCCGACGACCCATTACAAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTACGGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

CAAAGAGTCCCATCAATGGCAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCACCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAGGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCGATCTCCCACCGTTTCGAAGCGGCGGTGACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACAATACAAGAAACCCTATTGAATTACCTTACGAAAGTTCTCCATTTTATTCCGACGACCCATTACAAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTACGGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCACCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAGGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCGATCTCCCACCGTTTCGAAGCGGCGGTGACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACAATACAAGAAACCCTATTGAATTACCTTACGAAAGTTCTCCATTTTATTCCGACGACCCATTACAAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTACGGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNTRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAGDFCC

Homology

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BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-46
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           +SSSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNN 124
           IS R EAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 125 YNTRNP 129
             + NP
Sbjct: 122 PTSENP 127

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BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-42
Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 14  PCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHRFEAAV 73
           PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 74  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 118
           TISYEAQARL+DPIYGCV+HIFALQQQVM L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-41
Identity = 88/141 (62.41%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 9   SSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHR 68
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 69  FEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNTRNP 128
            EAA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++        
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 129 IELPYESSP-FYSDDPLQDLQ 149
           I+ P   +P +Y D   Q LQ
Sbjct: 122 IDSPSIENPNYYQDTKPQYLQ 135

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BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 6   SSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPI 65
           SS      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 66  SHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNT 125
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 126 RNPIELPYESSPFYSDDP 144
           R P  +P     F++  P
Sbjct: 149 R-PQPMPQPQPLFFTPPP 165

[Close]

BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot
Match: O81323 (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-36
Identity = 85/161 (52.80%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           SSSS     PCGACKFLRRKCV GCIFAPYF  E GA+HF+A+HKVFGASN SKLL H+P
Sbjct: 8   SSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVP 67

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYN 124
              R +A V+I +EAQARL+DPIYGCVSHI +LQQQV++L+ +++YL+   A + L    
Sbjct: 68  EHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLELPQ-- 127

Query: 125 TRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEP 166
              P ++P  SS       + DL +  ++ S    +  FEP
Sbjct: 128 -PQPPQVPVSSSGSLQALSITDLPT--ISPSVYDLSSIFEP 163

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BLAST of Lsi02G021740 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.0e-86
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           ++SSSSS+PPCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYN 124
           +SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNNY 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 125 TRNPIELPYESSPF-YSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAGD 184
           TRNP EL YE SPF YSDDP  DLQSWLLAESCSA APE EP AVPYFEMSVVDS LAGD
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGD 181

Query: 185 FCC 187
           FCC
Sbjct: 182 FCC 184

[Close]

BLAST of Lsi02G021740 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 166/187 (88.77%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLL 60
           MAASSSSSSS   PCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLL
Sbjct: 1   MAASSSSSSS---PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLL 60

Query: 61  AHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 120
           AHLP+SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILL
Sbjct: 61  AHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILL 120

Query: 121 NNYNTRNPIELPYESSP-FYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSN 180
           NNY TRNP ELPYE SP +YSDDP  DLQSWLLAESC+ AAPEFEP A+PYFEMSVV+S 
Sbjct: 121 NNYTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSK 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 184

[Close]

BLAST of Lsi02G021740 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 167/187 (89.30%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLL 60
           MAASSSSSSS   PCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLL
Sbjct: 1   MAASSSSSSS---PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLL 60

Query: 61  AHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 120
           AHLP+SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILL
Sbjct: 61  AHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILL 120

Query: 121 NNYNTRNPIELPYESSPF-YSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSN 180
           NNY TRN  ELPYE SPF YSDDP  DLQSWLL ESC+AAAPEFEP AVPYFEMSV+DS 
Sbjct: 121 NNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSK 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 184

[Close]

BLAST of Lsi02G021740 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 155/184 (84.24%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 3   ASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAH 62
           A+SSSSSSSSPPCGACKFLRRKCVNGCIFAPYF H+LGASHFSA+HKVFGASNASKLLAH
Sbjct: 2   AASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAH 61

Query: 63  LPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 122
           LP+SHR +AAVTISYEAQARLQDPIYGC+S IFALQ QVMNLRAQVAYLREQAAQILLN 
Sbjct: 62  LPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNG 121

Query: 123 YNTRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAG 182
           Y TRNP EL Y +S  YSD+ L DLQ+WLL ESCS AAPEFEPTA PY EM + DSNLAG
Sbjct: 122 YITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 185

[Close]

BLAST of Lsi02G021740 vs. ExPASy TrEMBL
Match: A0A6J1DSE8 (LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC111023473 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.6e-79
Identity = 156/186 (83.87%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLL 60
           MAAS+SSSSS   PCGACKFLRRKCVNGCIFAPYF HELG SHFSA+HKVFGASNASKLL
Sbjct: 1   MAASASSSSS---PCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLL 60

Query: 61  AHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 120
           AHLP+SHR EAA+TISYEAQARLQDPIYGCVSHIF LQQQV+NLRAQVAYLREQAAQILL
Sbjct: 61  AHLPVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILL 120

Query: 121 NNYNTRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNL 180
           NNY  RNP EL Y  SPF S DPLQDLQSWLLAE  SAAAPEFEP AVP+ EMS+ D N+
Sbjct: 121 NNYTIRNPNELLYGKSPF-SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNV 180

Query: 181 AGDFCC 187
           AGD CC
Sbjct: 181 AGDCCC 182

[Close]

BLAST of Lsi02G021740 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 339.0 bits (868), Expect = 2.7e-89
Identity = 167/181 (92.27%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           ++SSSSSSPPCGACKFLRRKCVNGCIFAP+F HELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYN 124
           +SHR +AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 
Sbjct: 62  VSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 125 TRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAGDF 184
           TRNPIELPYE SPFYSDDPL DLQ+WLLAESCSAAAPEFEP AVPY EMSVVDSNLAG+F
Sbjct: 122 TRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAGNF 181

Query: 185 C 186
           C
Sbjct: 182 C 182

[Close]

BLAST of Lsi02G021740 vs. NCBI nr
Match: XP_004150342.1 (LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_015971 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 2.1e-86
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           ++SSSSS+PPCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYN 124
           +SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNNY 
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 125 TRNPIELPYESSPF-YSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAGD 184
           TRNP EL YE SPF YSDDP  DLQSWLLAESCSA APE EP AVPYFEMSVVDS LAGD
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGD 181

Query: 185 FCC 187
           FCC
Sbjct: 182 FCC 184

[Close]

BLAST of Lsi02G021740 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 2.3e-85
Identity = 167/187 (89.30%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLL 60
           MAASSSSSSS   PCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLL
Sbjct: 1   MAASSSSSSS---PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLL 60

Query: 61  AHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 120
           AHLP+SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILL
Sbjct: 61  AHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILL 120

Query: 121 NNYNTRNPIELPYESSPF-YSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSN 180
           NNY TRN  ELPYE SPF YSDDP  DLQSWLL ESC+AAAPEFEP AVPYFEMSV+DS 
Sbjct: 121 NNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSK 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 184

[Close]

BLAST of Lsi02G021740 vs. NCBI nr
Match: KAA0042058.1 (LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB domain-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.3e-85
Identity = 166/187 (88.77%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLL 60
           MAASSSSSSS   PCGACKFLRRKCVNGCIFAPYF HELGASHFSAIHKVFGASNASKLL
Sbjct: 1   MAASSSSSSS---PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLL 60

Query: 61  AHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 120
           AHLP+SHR EAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILL
Sbjct: 61  AHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILL 120

Query: 121 NNYNTRNPIELPYESSP-FYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSN 180
           NNY TRNP ELPYE SP +YSDDP  DLQSWLLAESC+ AAPEFEP A+PYFEMSVV+S 
Sbjct: 121 NNYTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSK 180

Query: 181 LAGDFCC 187
           LAGDFCC
Sbjct: 181 LAGDFCC 184

[Close]

BLAST of Lsi02G021740 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-81
Identity = 155/184 (84.24%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 3   ASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAH 62
           A+SSSSSSSSPPCGACKFLRRKCVNGCIFAPYF H+LGASHFSA+HKVFGASNASKLLAH
Sbjct: 2   AASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAH 61

Query: 63  LPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 122
           LP+SHR +AAVTISYEAQARLQDPIYGC+S IFALQ QVMNLRAQVAYLREQAAQILLN 
Sbjct: 62  LPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNG 121

Query: 123 YNTRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAG 182
           Y TRNP EL Y +S  YSD+ L DLQ+WLL ESCS AAPEFEPTA PY EM + DSNLAG
Sbjct: 122 YITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAG 181

Query: 183 DFCC 187
           DFCC
Sbjct: 182 DFCC 185

[Close]

BLAST of Lsi02G021740 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-47
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           +SSSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNN 124
           IS R EAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 125 YNTRNP 129
             + NP
Sbjct: 122 PTSENP 127

[Close]

BLAST of Lsi02G021740 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-42
Identity = 88/141 (62.41%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 9   SSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHR 68
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 69  FEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNTRNP 128
            EAA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++        
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 129 IELPYESSP-FYSDDPLQDLQ 149
           I+ P   +P +Y D   Q LQ
Sbjct: 122 IDSPSIENPNYYQDTKPQYLQ 135

[Close]

BLAST of Lsi02G021740 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 6   SSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPI 65
           SS      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 66  SHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNT 125
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 126 RNPIELPYESSPFYSDDP 144
           R P  +P     F++  P
Sbjct: 149 R-PQPMPQPQPLFFTPPP 165

[Close]

BLAST of Lsi02G021740 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 85/161 (52.80%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 5   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLP 64
           SSSS     PCGACKFLRRKCV GCIFAPYF  E GA+HF+A+HKVFGASN SKLL H+P
Sbjct: 8   SSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVP 67

Query: 65  ISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYN 124
              R +A V+I +EAQARL+DPIYGCVSHI +LQQQV++L+ +++YL+   A + L    
Sbjct: 68  EHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLELPQ-- 127

Query: 125 TRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEP 166
              P ++P  SS       + DL +  ++ S    +  FEP
Sbjct: 128 -PQPPQVPVSSSGSLQALSITDLPT--ISPSVYDLSSIFEP 163

[Close]

BLAST of Lsi02G021740 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 151.0 bits (380), Expect = 9.5e-37
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 14  PCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHRFEAAV 73
           PCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   R +A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 74  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 118
           TISYEA +RL DPIYGCVS IF+LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

The following BLAST results are available for this feature:

BLAST of Lsi02G021740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	1.7e-46	75.40	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	1.9e-42	80.77	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	3.6e-41	62.41	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	1.5e-39	59.42	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
O81323	7.9e-36	52.80	LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 S...	[more]

BLAST of Lsi02G021740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D4	1.0e-86	90.16	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A5D3D179	1.1e-85	88.77	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BGZ5	1.1e-85	89.30	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]
A0A6J1KRG7	1.7e-81	84.24	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]
A0A6J1DSE8	4.6e-79	83.87	LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Lsi02G021740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896394.1	2.7e-89	92.27	LOB domain-containing protein 29-like [Benincasa hispida]	[more]
XP_004150342.1	2.1e-86	90.16	LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical prot...	[more]
XP_008447245.1	2.3e-85	89.30	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
KAA0042058.1	2.3e-85	88.77	LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB doma...	[more]
XP_023004822.1	3.5e-81	84.24	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]

BLAST of Lsi02G021740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	1.2e-47	75.40	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.6e-42	62.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	1.1e-40	59.42	LOB domain-containing protein 18	[more]
AT4G00220.1	5.6e-37	52.80	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G31310.1	9.5e-37	69.23	LOB domain-containing protein 14	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 10..140
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 10..140
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 14..111 e-value: 3.0E-34 score: 117.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 13..115 score: 21.572639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G021740.1	Lsi02G021740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus