Lsi02G021590 (gene) Bottle gourd (USVL1VR-Ls) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCCTTTAAATAATTTTGAATGTGTGGTCTAAATTTTTTATTTTTAAGAAATGGAGATCCATTATCTGATGTTTCTATTGTGTTTGTGTAATTCTAAAATGCTAGTTAGTATTGTTCTCTTAGTTTCATCTACTTCTTATGTATCATTGTAATTCGAGTATTAGACTTGTTTCATTTCATCAATGAAAAGCATTGTTTTTGTTTCCAAAAAAAAAAAGAAAAATGTGAGTGGGTAATAGGCAAGAAGATCTATGAATTTGTATGCTTAACAATCACACTTGTGATTTTGAATTGGGGAAAGGCAATTTGTACGCTTAACAATAACACTTTTGATTCGACATTGGAGAAGGCAATTATATTTGCTGTGGGGAATACTCTAGTTTGTGACAATCTTGATGAAGCCAAGGCTCTAAGCTGGAGTGGAGAAAGACATAAAGGTACGTTTAATTGGTTTTAAATTGTTTTTGTATAGCTTCATCAGGTTTATCTTATGGCTACTTTGTTTATGCTTGAACTAGTCGTAACTGTTGATGGTATTCTGCTTACAAAATCTGGCACGATGACTGGGGGTATTAGTGGTGGCATGGAAGCAAGGTCAAACAAATGGGACGATAAAAAGATTGAAGGTACTCAATCCATTCATTGATTAATATTTTTTGGAACTTTACCATTTATTGTTGCTGCTTGCTGTATTGTAGGGCTTAAGAAAAAGAAAGAGCAGTATGAATCAGAGCTAGATGAACTTGGATCAATCAGAGAGATGCAACTGAAGGAGTCTGAAGCATCTGGGAGGATTAGTGGACTCGAGAAAAAGATTCAGTATGCGGAGATTGAGAAGGTGATTACCTGA TTTCCCTTTAAATAATTTTGAATGTGTGGTCTAAATTTTTTATTTTTAAGAAATGGAGATCCATTATCTGATGTTTCTATTGTGTTTGTGTAATTCTAAAATGCTAGTTAGTATTGTTCTCTTAGTTTCATCTACTTCTTATGTATCATTGTAATTCGAGTATTAGACTTGTTTCATTTCATCAATGAAAAGCATTGTTTTTGTTTCCAAAAAAAAAAAGAAAAATGTGAGTGGGTAATAGGCAAGAAGATCTATGAATTTGTATGCTTAACAATCACACTTGTGATTTTGAATTGGGGAAAGGCAATTTGTACGCTTAACAATAACACTTTTGATTCGACATTGGAGAAGGCAATTATATTTGCTGTGGGGAATACTCTAGTTTGTGACAATCTTGATGAAGCCAAGGCTCTAAGCTGGAGTGGAGAAAGACATAAAGTCGTAACTGTTGATGGTATTCTGCTTACAAAATCTGGCACGATGACTGGGGGTATTAGTGGTGGCATGGAAGCAAGGTCAAACAAATGGGACGATAAAAAGATTGAAGGGCTTAAGAAAAAGAAAGAGCAGTATGAATCAGAGCTAGATGAACTTGGATCAATCAGAGAGATGCAACTGAAGGAGTCTGAAGCATCTGGGAGGATTAGTGGACTCGAGAAAAAGATTCAGTATGCGGAGATTGAGAAGGTGATTACCTGA ATGACTGGGGGTATTAGTGGTGGCATGGAAGCAAGGTCAAACAAATGGGACGATAAAAAGATTGAAGGGCTTAAGAAAAAGAAAGAGCAGTATGAATCAGAGCTAGATGAACTTGGATCAATCAGAGAGATGCAACTGAAGGAGTCTGAAGCATCTGGGAGGATTAGTGGACTCGAGAAAAAGATTCAGTATGCGGAGATTGAGAAGGTGATTACCTGA MTGGISGGMEARSNKWDDKKIEGLKKKKEQYESELDELGSIREMQLKESEASGRISGLEKKIQYAEIEKVIT Homology
BLAST of Lsi02G021590 vs. ExPASy Swiss-Prot
Match: Q6Q1P4 (Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMC1 PE=2 SV=2) HSP 1 Score: 110.5 bits (275), Expect = 7.8e-24 Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0
BLAST of Lsi02G021590 vs. ExPASy TrEMBL
Match: A0A5A7TKR4 (Structural maintenance of chromosomes protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004570 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28 Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
BLAST of Lsi02G021590 vs. ExPASy TrEMBL
Match: A0A5D3D127 (Structural maintenance of chromosomes protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002480 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28 Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
BLAST of Lsi02G021590 vs. ExPASy TrEMBL
Match: A0A6J1JRD5 (Structural maintenance of chromosomes protein OS=Cucurbita maxima OX=3661 GN=LOC111488207 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. ExPASy TrEMBL
Match: A0A6J1GMW1 (Structural maintenance of chromosomes protein OS=Cucurbita moschata OX=3662 GN=LOC111455956 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. ExPASy TrEMBL
Match: A0A0A0KA44 (SMC_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372270 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. NCBI nr
Match: KAA0042015.1 (structural maintenance of chromosomes protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28 Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
BLAST of Lsi02G021590 vs. NCBI nr
Match: TYK17951.1 (structural maintenance of chromosomes protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28 Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
BLAST of Lsi02G021590 vs. NCBI nr
Match: XP_023549257.1 (structural maintenance of chromosomes protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. NCBI nr
Match: AKU77148.1 (structural maintenance of chromosomes protein 1, partial [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. NCBI nr
Match: KAG6576027.1 (Structural maintenance of chromosomes protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lsi02G021590 vs. TAIR 10
Match: AT3G54670.1 (Structural maintenance of chromosomes (SMC) family protein ) HSP 1 Score: 110.5 bits (275), Expect = 5.5e-25 Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0
BLAST of Lsi02G021590 vs. TAIR 10
Match: AT3G54670.3 (Structural maintenance of chromosomes (SMC) family protein ) HSP 1 Score: 110.5 bits (275), Expect = 5.5e-25 Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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