Lsi02G020730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G020730
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionThylakoid protein sll1769
Locationchr02: 26916966 .. 26920208 (-)
RNA-Seq ExpressionLsi02G020730
SyntenyLsi02G020730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTTTGAGTTAAAACTTTCCATTTAGTTAGGGTGCCAAATTCTAATCCATGAAAGTGGCAATTGGGTAAGCCGAACGAGGAATGAGCAAAAACAGGGATGGTTCTGAGTTCCTGTCATCATACAGCTCAAGCCCACAAAGTACAATTTTTCATTTTTTTTCTCACACCCCACCAAAGATCTTTCTTTTATAAATTCCTGTTTGGCTGTCAAGAAAACGAGCGAGAAAATCTGAGAAAGTGACGCCGTGTAATCTTCCAGTCCATCGCACAAAATGAGTAGTGGGATTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGCCCACTAAGCCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTCTTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTACCTTTAATCTTCACCTCCTCTGTTTTTGTTTTCCAATCTGTTGCTAGTTATTGGTGAATTTCACGATGGTGTTAGTGGTGAATATGTTGTTAAATCTGTTATTAATTCTGAGATTTTAGTGAATCCCTGCGTGTTTGTTGGTTTTTATATGGATTTCATAAAACAATGATGATTTTACTTCTCGTATGAAGCTGTCTGATTCTATGACTACAAACTGTTTGATCTATTGTCAATGGTTTTATTAAGTGTGAAGTTGGCCTAATTTTGTTGTGATTAGTTTTCTTCAACTCAATGCATTAAGAGCTAATTAGTTTTTTGGACTAGGAATTCATTTTCCTTGCACTTATTTTGACCAAATTGTGAAAACTTGTCACGTTCTAAAAAGGTCTTCTACTTCTAATGACGTGGAGGAGGAAATATGACACTTTGTTTTTTTGGTGGAAACTTGGAGGTTTAATGAATAACTGGGGTGGATTGAGGGAGAATCTGCAGAAGGACCAAATAGATCTTAAATTTGACTTCTTGTATTTAGGCCTTTGACCATAGTTTTGTTCTCTGATTTCCATGAAGAACTTGCTCAATAAGAGTTAATTCATCAGTATACGGGGTTCTAGGACCACGAGAAAACCCACTTCAATCAGTATTCAATGGACCACTCATGTGCTCTTTCCATAGAATTATCCATTCTCTGTATTTGCCTTATGCGCATTGCTGATATAAGAAAAGAGGGAAGGTAGACAACTTTAAGAAGATGATATTGATCTTATTAGAAGAAGATTCATTAGAAACTGTAGATTTATTTTTTATTTTTTTTTGTTTCTTTGATCTTCTAGTTTTGTTACTTTTATCAAGCATCCAATGAACTAGCTGTATGATGCAGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGGGCGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGTAGGGTGCATCAAAGTTAATGATAGACTTAGATGACTGATATGAGATTCTGATTTTCACTTCCTTCCCATTTGTGTGGTTGATAGCAGTTCAATTTTGTAGGAGATTTATTTTGGTTAATCGTCATTATTATTAATATTTTACTTCATCTAATCGAAGGATAATAATCTTTTCCTATTAGCCAATGTTATCCCTGCTGCAGTACCAGTTTACTTCCATTTTCTTTTGAAACATGATGGCATAAATTTGTGTAGAACTTCCTAATGTTGTTTTTAGTTCACTGCATTGTGATCTCTTGAACTGTGAATTATACAAAACTAATGAACAGAAAAAGGACGTCTGTATGGTAGTATTGACTAGGAATAAAGTCATTGAAAATCCATGGCAGTTGTTTCTCCAATGTTTTCTTTCTTGGACGTTAGCTTATGAAATTAACTACTTTGAGTCATAAGTATCCGTTGAAACTTCTGTGGCTTAAAACTTTTTGAGTGCAGCAGTAGGTTAGACCTGAATTGAAGCTTTTTCATGAACCTACTGAAACCATGCTGCATGCCTTGTGGTGATGGTTCATGTTTCTGAGATAAATCTTTGTACTTTTGTTAAGTAAGTCAATTTTAACCTTAAACTTACTGAGATCTAAACTTGAATAAGTGGTAAAATTTATACATATATCAATTAAGTTTTCATTTCTTTTGAAAGTTTTGTCTGGCTATAAGCATCATTATGGTTGGATGTGGTTCCTATTGTGAGTACGCATTGTCTCAATTGTATTAGATATCATATTTTTCATATGGGCCTTGGCATTTTATTGCTAAGCCTAGGTGTTTTTTTACCCACTTGATTTTGTGGTTAGGTTTCGGTATTTTTATTGTTGGGATTTTGGCATTTTTTGGGTAATTTTGAGTGTTTTTCGGGTTGAATTTTCTGTTATCTGTTGTAAATCCTCTTAGTTCTAATGAGTTATTAACTGTCCAGCTTATTTAAGTTCAGTTTACTTTCAAGTTAAAGTAAGCATACCGAGACAAGAACGAAGAGTAAGAAACATTTTCAATATCCTCTCAGACTAAATTGGAATGGATCGAGGGTGCGGTGGTGTGTGCTATCTTGTGGGGGCTTTGAGCGAAAGAATAACAAAATCTTCAGAGGGCGTGAGAGTTTTAATAACGATATTTGGTCCCTTAGATTTTTTGTATCTCACTGAGCTTCTGTTTCTAAGCTCTTTTATAATTCTTCGTTAGGTCTTATTTCTCAATATTGACAATGGGTGAAGTTTAAAGGCACTCTTTTATGTTATTGTCTTTTCTGCCTATGCTGAACATGACTTGTTCATACTTAAATGAGCTTTATATACAGGAGGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGATAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCGTATCCTCTACAATCGAAGTTACTTCATCTCCAACCGCTTCGACCAATCAACTACAACTCTCGAATCTCGACTCAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACGAATAGTAATCGTCTCTATGTCAATTTCTCTTGGTTATAGACTTGTAGTGAATGTAACCTATTTACTGATGATGATAAATAAGTTATTTGGTCTTGAAATCATATAGTAATTACTTTCTTAAGGTTCTGTATATCAGATATCTTATGAGTTTCTTGACGTTGAATTTTGTCAGACCGAACAGCCCGCCCAGA

mRNA sequence

AATTTTTTGAGTTAAAACTTTCCATTTAGTTAGGGTGCCAAATTCTAATCCATGAAAGTGGCAATTGGGTAAGCCGAACGAGGAATGAGCAAAAACAGGGATGGTTCTGAGTTCCTGTCATCATACAGCTCAAGCCCACAAAGTACAATTTTTCATTTTTTTTCTCACACCCCACCAAAGATCTTTCTTTTATAAATTCCTGTTTGGCTGTCAAGAAAACGAGCGAGAAAATCTGAGAAAGTGACGCCGTGTAATCTTCCAGTCCATCGCACAAAATGAGTAGTGGGATTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGCCCACTAAGCCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTCTTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGGGCGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGATAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCGTATCCTCTACAATCGAAGTTACTTCATCTCCAACCGCTTCGACCAATCAACTACAACTCTCGAATCTCGACTCAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACGAATAACCGAACAGCCCGCCCAGA

Coding sequence (CDS)

ATGAGTAGTGGGATTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGCCCACTAAGCCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTCTTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGGGCGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGATAAAGCAGCACGTGATGCCAAAGAAGTACAAGGACCCGTATCCTCTACAATCGAAGTTACTTCATCTCCAACCGCTTCGACCAATCAACTACAACTCTCGAATCTCGACTCAGATTCAGAAACTGTTGTGAATCAGGATCCTCCTCTTGGTGACGAATAA

Protein sequence

MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARDAKEVQGPVSSTIEVTSSPTASTNQLQLSNLDSDSETVVNQDPPLGDE
Homology
[Close]
BLAST of Lsi02G020730 vs. ExPASy Swiss-Prot
Match: Q8LDV3 (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g13200 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-22
Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 0 

Query: 65  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERA 124
           SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAEQQKQ+ + QEEV+ERA
Sbjct: 64  SGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERA 123

Query: 125 KKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSNLDSDSETVV 173
           KKAK++AAR+  E QG V+S  + +T +P A       S    +S+T++
Sbjct: 124 KKAKERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKTIM 172

[Close]
BLAST of Lsi02G020730 vs. ExPASy Swiss-Prot
Match: P73628 (Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1769 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 73  VLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERAKKAKDKAA 132
           VL AFFLG+A AE L+E++E  +   L  +G+  AEQ++ +  F  EV  RA     +  
Sbjct: 5   VLQAFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRAANDVTQEG 64

Query: 133 RDAKEVQGPVSS 145
                V GPVS+
Sbjct: 65  AAIATVDGPVSA 76

[Close]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match: A0A1S3BHX5 (uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 151/185 (81.62%), Postives = 164/185 (88.65%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSS ITSSVS SPFSLVPTKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL GIG+LQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KAAR+AKEVQ PVSS     TIEV+SSPT+S+        D+DSE+ VNQD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSP-------DADSESGVNQD 178

[Close]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match: A0A0A0K6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.7e-68
Identity = 151/185 (81.62%), Postives = 163/185 (88.11%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+TSSVSQSPFSLV TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL GIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KAARD+KEVQGPVSS+     IEV SSPT+S+        D+DSE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTSSSP-------DADSESVVNQD 178

[Close]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match: A0A6J1GNZ1 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456135 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.0e-60
Identity = 137/186 (73.66%), Postives = 155/186 (83.33%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+ SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+
Sbjct: 1   MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG IGRLQAE+Q+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           I+RAKKAK+KA RDAKE QGP+SS     TIEVTSSPTAS+N  Q S+ ++ SETVVNQD
Sbjct: 121 IDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180

Query: 181 PPLGDE 182
           PP GDE
Sbjct: 181 PPRGDE 180

[Close]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match: A0A6J1JX27 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488248 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.3e-59
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+ SSVS S FS++PT+ KITH SSPSL+ FRSSST SNLK      FRPNGS RF+
Sbjct: 1   MSSGVASSVSPSLFSVLPTRSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL  IGRLQAE+Q+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGEVLSEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KA RDAKE QGP+SS     TIEVTSSPT S+N  Q S+L++ SETVVNQD
Sbjct: 121 IERAKKAKEKAERDAKEAQGPISSSILSATIEVTSSPTGSSNGQQRSSLNAYSETVVNQD 180

Query: 181 PPLGDE 182
           PP GDE
Sbjct: 181 PPRGDE 180

[Close]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match: A0A6J1KY61 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498180 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.7e-57
Identity = 138/188 (73.40%), Postives = 148/188 (78.72%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           M+SG+T SVS S FS++ +KPKITH SS           PSNLKFR IS   P GSPRFV
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHLSS-----------PSNLKFRPIS---PIGSPRFV 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL GIGRLQAEQQKQILDFQEEV
Sbjct: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-------TIEVTSSPTASTNQLQLSNLDSDSETVVN 180
           IERAKKA++KAARDAKEVQGP+SS       TIEV SS T STNQ QLSN  SDS T  N
Sbjct: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174

Query: 181 QDPPLGDE 182
           QDPPLGDE
Sbjct: 181 QDPPLGDE 174

[Close]
BLAST of Lsi02G020730 vs. NCBI nr
Match: XP_038900031.1 (uncharacterized protein At4g13200, chloroplastic [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 166/186 (89.25%), Postives = 172/186 (92.47%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+TSSVSQSPFSLVPTKPKITHYSS SLL FRSSSTPSNLKFR ISHF+PNGSPRF+
Sbjct: 1   MSSGVTSSVSQSPFSLVPTKPKITHYSSQSLLLFRSSSTPSNLKFRRISHFQPNGSPRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL GIGRLQAEQQKQI DFQEEV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAEQQKQITDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAKDKAARDAKEVQGPVSS     TIEVTSSPT STN+ QLSN D DSETVVNQD
Sbjct: 121 IERAKKAKDKAARDAKEVQGPVSSSITSPTIEVTSSPTPSTNRQQLSNPDQDSETVVNQD 180

Query: 181 PPLGDE 182
           PPLGD+
Sbjct: 181 PPLGDK 186

[Close]
BLAST of Lsi02G020730 vs. NCBI nr
Match: XP_008447268.1 (PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.5e-68
Identity = 151/185 (81.62%), Postives = 164/185 (88.65%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSS ITSSVS SPFSLVPTKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL GIG+LQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KAAR+AKEVQ PVSS     TIEV+SSPT+S+        D+DSE+ VNQD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTSSSP-------DADSESGVNQD 178

[Close]
BLAST of Lsi02G020730 vs. NCBI nr
Match: XP_004139667.1 (uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 hypothetical protein Csa_015636 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 5.6e-68
Identity = 151/185 (81.62%), Postives = 163/185 (88.11%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+TSSVSQSPFSLV TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL GIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSST-----IEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KAARD+KEVQGPVSS+     IEV SSPT+S+        D+DSE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTSSSP-------DADSESVVNQD 178

[Close]
BLAST of Lsi02G020730 vs. NCBI nr
Match: XP_022953678.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 137/186 (73.66%), Postives = 155/186 (83.33%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+ SSVS S FS+VPTK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+
Sbjct: 1   MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG IGRLQAE+Q+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           I+RAKKAK+KA RDAKE QGP+SS     TIEVTSSPTAS+N  Q S+ ++ SETVVNQD
Sbjct: 121 IDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180

Query: 181 PPLGDE 182
           PP GDE
Sbjct: 181 PPRGDE 180

[Close]
BLAST of Lsi02G020730 vs. NCBI nr
Match: XP_022991713.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 4.7e-59
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = 0 

Query: 1   MSSGITSSVSQSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSPRFV 60
           MSSG+ SSVS S FS++PT+ KITH SSPSL+ FRSSST SNLK      FRPNGS RF+
Sbjct: 1   MSSGVASSVSPSLFSVLPTRSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL  IGRLQAE+Q+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGEVLSEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPVSS-----TIEVTSSPTASTNQLQLSNLDSDSETVVNQD 180
           IERAKKAK+KA RDAKE QGP+SS     TIEVTSSPT S+N  Q S+L++ SETVVNQD
Sbjct: 121 IERAKKAKEKAERDAKEAQGPISSSILSATIEVTSSPTGSSNGQQRSSLNAYSETVVNQD 180

Query: 181 PPLGDE 182
           PP GDE
Sbjct: 181 PPRGDE 180

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BLAST of Lsi02G020730 vs. TAIR 10
Match: AT4G13200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-23
Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 0 

Query: 65  SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAEQQKQILDFQEEVIERA 124
           SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAEQQKQ+ + QEEV+ERA
Sbjct: 64  SGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERA 123

Query: 125 KKAKDKAARDAKEVQGPVSS-TIEVTSSPTASTNQLQLSNLDSDSETVV 173
           KKAK++AAR+  E QG V+S  + +T +P A       S    +S+T++
Sbjct: 124 KKAKERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKTIM 172

The following BLAST results are available for this feature:
BLAST of Lsi02G020730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LDV36.3e-2254.13Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P736285.4e-0538.89Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
BLAST of Lsi02G020730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BHX51.2e-6881.62uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3... [more]
A0A0A0K6Q22.7e-6881.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1[more]
A0A6J1GNZ16.0e-6073.66uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1JX272.3e-5973.12uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A6J1KY613.7e-5773.40uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
BLAST of Lsi02G020730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900031.12.0e-7889.25uncharacterized protein At4g13200, chloroplastic [Benincasa hispida][more]
XP_008447268.12.5e-6881.62PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis ... [more]
XP_004139667.15.6e-6881.62uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 h... [more]
XP_022953678.11.2e-5973.66uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata][more]
XP_022991713.14.7e-5973.12uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima][more]
BLAST of Lsi02G020730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13200.14.5e-2354.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..181
IPR040003Plastoglobular protein 18-likePANTHERPTHR35745BNACNNG14650D PROTEINcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G020730.1Lsi02G020730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009535 chloroplast thylakoid membrane