Lsi02G020620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G020620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Acanthoscurrin-1-like
Location	chr02: 26767632 .. 26767961 (-)
RNA-Seq Expression	Lsi02G020620
Synteny	Lsi02G020620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGTTCATGGCTTTGCTCTTGGCTCTTGTAGCCACTCACGCCTTAGCTCGGCCTACACCGGACACCACCTTCAATGACCAAAAGAACTTCCTGACCTACGGTGGCCTCGGTGGCTACTCCGGCATTGGCAGCAATGGCCTCCCATTCGGTGGGGTGGGAGGTGCCATTGGAGGAACTGGCCTCGGTGGTGGTCTCGGAGGTGGTCTCGGCGCTACTGGAATTGGTGGACTAGGTGGACTGGGAGGCACTGGAGGTGGAGCTGCCGGGGGACTCGGAGGCGGAGCTGGTGTTGGTGGTGGTTCTGGTCTTACTAATCCTTGA

mRNA sequence

ATGGCCAAATTGTTCATGGCTTTGCTCTTGGCTCTTGTAGCCACTCACGCCTTAGCTCGGCCTACACCGGACACCACCTTCAATGACCAAAAGAACTTCCTGACCTACGGTGGCCTCGGTGGCTACTCCGGCATTGGCAGCAATGGCCTCCCATTCGGTGGGGTGGGAGGTGCCATTGGAGGAACTGGCCTCGGTGGTGGTCTCGGAGGTGGTCTCGGCGCTACTGGAATTGGTGGACTAGGTGGACTGGGAGGCACTGGAGGTGGAGCTGCCGGGGGACTCGGAGGCGGAGCTGGTGTTGGTGGTGGTTCTGGTCTTACTAATCCTTGA

Coding sequence (CDS)

ATGGCCAAATTGTTCATGGCTTTGCTCTTGGCTCTTGTAGCCACTCACGCCTTAGCTCGGCCTACACCGGACACCACCTTCAATGACCAAAAGAACTTCCTGACCTACGGTGGCCTCGGTGGCTACTCCGGCATTGGCAGCAATGGCCTCCCATTCGGTGGGGTGGGAGGTGCCATTGGAGGAACTGGCCTCGGTGGTGGTCTCGGAGGTGGTCTCGGCGCTACTGGAATTGGTGGACTAGGTGGACTGGGAGGCACTGGAGGTGGAGCTGCCGGGGGACTCGGAGGCGGAGCTGGTGTTGGTGGTGGTTCTGGTCTTACTAATCCTTGA

Protein sequence

MAKLFMALLLALVATHALARPTPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAIGGTGLGGGLGGGLGATGIGGLGGLGGTGGGAAGGLGGGAGVGGGSGLTNP

Homology

[Close]

BLAST of Lsi02G020620 vs. ExPASy TrEMBL
Match: A0A1S3CFV5 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 96/116 (82.76%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLFMALLLAL+ATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGLGGGLGGGL-GATGIGGLGGL-----GGTGGGAAGGLGGGAGVGGGSGLTNP 110
           GGTG  GGLGGGL GATGIGGLGGL     GG G G  GG GGG GVGGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of Lsi02G020620 vs. ExPASy TrEMBL
Match: A0A5D3D5H6 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00260 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.1e-27
Identity = 95/116 (81.90%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLF+ALLLAL+ATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGLGGGLGGGL-GATGIGGLGGL-----GGTGGGAAGGLGGGAGVGGGSGLTNP 110
           GGTG  GGLGGGL GATGIGGLGGL     GG G G  GG GGG GVGGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of Lsi02G020620 vs. ExPASy TrEMBL
Match: A0A0A0K6P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26
Identity = 94/114 (82.46%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLF+ALLLALVATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGG+GG I
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGLGGGLGGGLGATGIGGLGGLGGTGGGAAGGL----GGGAGVGGGSGLTNP 110
           GGTG  GGLGGGLG  G  G+GGLGG GGGAAGGL    GGG G+GGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLG--GATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of Lsi02G020620 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 96/115 (83.48%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARPTP-DTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLFMALLLALVATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGGVGGAI
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTGLGGGLGGGL-GATGI-GGLGGLGGTG------GGAAGGLGGGAGVGGGSGL 107
           GG GLGGGLGGGL GATGI GGLGGLGGTG      GG  GGLGGG G G G GL
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGL 115

[Close]

BLAST of Lsi02G020620 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 93/132 (70.45%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARPTP-DTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLFMALLLALVATHALARPTP D TF+DQKNFLTYGG+GGYSGIG+NGLPFGG+GGAI
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTGLGGGLGGGL-----GATGI-----------GGLGGLGGTGGGAAGGLGG------G 110
           GG GLGGGLGGGL     G TGI           GG GG+GGT GG  GGLGG      G
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGGGLG 120

[Close]

BLAST of Lsi02G020620 vs. NCBI nr
Match: XP_038899239.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 102/117 (87.18%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARPTPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAIG 60
           MAKLFMALLLALVATHALARPTPDTTFNDQKNFLTYGGLG YSGIGSNGLPFGGVGGA+G
Sbjct: 1   MAKLFMALLLALVATHALARPTPDTTFNDQKNFLTYGGLGAYSGIGSNGLPFGGVGGAMG 60

Query: 61  GTGLGGGLGGGLGATGIGGLGGLGGTGGGAAGGLGGGA--------GVGGGSGLTNP 110
           GTGLGGGLGGGLG  G  GLGGLGG+GGGAAGGLGGGA        GVGGGSGLTNP
Sbjct: 61  GTGLGGGLGGGLG--GATGLGGLGGSGGGAAGGLGGGAGGGAGAGVGVGGGSGLTNP 115

[Close]

BLAST of Lsi02G020620 vs. NCBI nr
Match: XP_008462002.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 96/116 (82.76%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLFMALLLAL+ATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGLGGGLGGGL-GATGIGGLGGL-----GGTGGGAAGGLGGGAGVGGGSGLTNP 110
           GGTG  GGLGGGL GATGIGGLGGL     GG G G  GG GGG GVGGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of Lsi02G020620 vs. NCBI nr
Match: KAA0050569.1 (glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK18808.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-27
Identity = 95/116 (81.90%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLF+ALLLAL+ATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGLGGGLGGGL-GATGIGGLGGL-----GGTGGGAAGGLGGGAGVGGGSGLTNP 110
           GGTG  GGLGGGL GATGIGGLGGL     GG G G  GG GGG GVGGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of Lsi02G020620 vs. NCBI nr
Match: XP_011659167.2 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-26
Identity = 94/114 (82.46%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLF+ALLLALVATHALARP TP TTF+DQKNFLTYGGLGGYSGIGSNGLPFGG+GG I
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGLGGGLGGGLGATGIGGLGGLGGTGGGAAGGL----GGGAGVGGGSGLTNP 110
           GGTG  GGLGGGLG  G  G+GGLGG GGGAAGGL    GGG G+GGGSGLTNP
Sbjct: 61  GGTG-PGGLGGGLG--GATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of Lsi02G020620 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-25
Identity = 96/115 (83.48%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHALARPTP-DTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGGAI 60
           MAKLFMALLLALVATHALARPTP D TF+DQKNFLTYGG+GGYSGIGSNGLPFGGVGGAI
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTGLGGGLGGGL-GATGI-GGLGGLGGTG------GGAAGGLGGGAGVGGGSGL 107
           GG GLGGGLGGGL GATGI GGLGGLGGTG      GG  GGLGGG G G G GL
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGL 115

[Close]

BLAST of Lsi02G020620 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-07
Identity = 61/113 (53.98%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   MAKLFMALLLALVATHAL---ARPTPDTTFNDQKNFLTYGGLGGYSGIGSNGLPFGGVGG 60
           MAK F  + L      AL   AR  P    +DQKN+L YG  GGYSG+G NGLPFGGVGG
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVP-VGLSDQKNYLGYG--GGYSGVGDNGLPFGGVGG 60

Query: 61  AIGGTG--LG----GGLGGGLGATGIGGLGGLGGTGGGAAGGLGGGAGVGGGS 105
            + G G  LG    GG GGGLG    GGLG  GG G G  GGLGGG+G+G G+
Sbjct: 61  GVSGPGGNLGYGGFGGAGGGLG----GGLG--GGAGSGLGGGLGGGSGIGAGT 104

The following BLAST results are available for this feature:

BLAST of Lsi02G020620 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G020620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFV5	1.4e-27	82.76	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3D5H6	4.1e-27	81.90	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0K6P3	2.6e-26	82.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1	[more]
A0A5A7U5T7	1.0e-25	83.48	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A0A0K9U1	4.2e-24	70.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]

BLAST of Lsi02G020620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899239.1	2.3e-32	87.18	glycine-rich protein 5-like [Benincasa hispida]	[more]
XP_008462002.1	2.9e-27	82.76	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
KAA0050569.1	8.4e-27	81.90	glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_011659167.2	5.4e-26	82.46	glycine-rich protein 5 [Cucumis sativus]	[more]
KAA0050560.1	2.1e-25	83.48	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]

BLAST of Lsi02G020620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	3.5e-07	53.98	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..105
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G020620.1	Lsi02G020620.1	mRNA