Lsi02G020600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G020600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	S-protein homolog
Location	chr02: 26755997 .. 26756440 (+)
RNA-Seq Expression	Lsi02G020600
Synteny	Lsi02G020600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTCTCAAGAAACCATTGGGTTTCATTACAATTGTGGCTTTGGTCCTTCTTAGGTCTTCCATGGTAGCTTTAGGAGCTTGGTCATTACTAACATGGCGAGTCGACATCGTGAATGGGCTAAGCAATGGAGAAACATTGTTTGTTCATTGCAAGTCGGAAGACGACGATTTGGGAAAACACAAGCTGAAGAGTGGAACTAAGTTTGGTTTTAGTTTCATACCAAATTTTTGGGGAACCACACTGTTTTGGTGCTACTTGAGGAAACCAAACAATGGCCATGCTGCTTTTGATGTTTATTGGTTTGAAGGTAGCACACTTAATCATTGGCTTTTTACAAGATGCAGCTGGAGTGATTGTATTTGGATTGCTAAAGTGGATGGGATTTACATTAAAAATATCCCTTTGAATCAAGATGAGTTTGTTCACCCATGGGAATGA

mRNA sequence

ATGGGTGTTCTCAAGAAACCATTGGGTTTCATTACAATTGTGGCTTTGGTCCTTCTTAGGTCTTCCATGGTAGCTTTAGGAGCTTGGTCATTACTAACATGGCGAGTCGACATCGTGAATGGGCTAAGCAATGGAGAAACATTGTTTGTTCATTGCAAGTCGGAAGACGACGATTTGGGAAAACACAAGCTGAAGAGTGGAACTAAGTTTGGTTTTAGTTTCATACCAAATTTTTGGGGAACCACACTGTTTTGGTGCTACTTGAGGAAACCAAACAATGGCCATGCTGCTTTTGATGTTTATTGGTTTGAAGGTAGCACACTTAATCATTGGCTTTTTACAAGATGCAGCTGGAGTGATTGTATTTGGATTGCTAAAGTGGATGGGATTTACATTAAAAATATCCCTTTGAATCAAGATGAGTTTGTTCACCCATGGGAATGA

Coding sequence (CDS)

ATGGGTGTTCTCAAGAAACCATTGGGTTTCATTACAATTGTGGCTTTGGTCCTTCTTAGGTCTTCCATGGTAGCTTTAGGAGCTTGGTCATTACTAACATGGCGAGTCGACATCGTGAATGGGCTAAGCAATGGAGAAACATTGTTTGTTCATTGCAAGTCGGAAGACGACGATTTGGGAAAACACAAGCTGAAGAGTGGAACTAAGTTTGGTTTTAGTTTCATACCAAATTTTTGGGGAACCACACTGTTTTGGTGCTACTTGAGGAAACCAAACAATGGCCATGCTGCTTTTGATGTTTATTGGTTTGAAGGTAGCACACTTAATCATTGGCTTTTTACAAGATGCAGCTGGAGTGATTGTATTTGGATTGCTAAAGTGGATGGGATTTACATTAAAAATATCCCTTTGAATCAAGATGAGTTTGTTCACCCATGGGAATGA

Protein sequence

MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPWE

Homology

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BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 34  WRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNN 93
           W+V +VNGL+ GETLF+HCKS++DDLG+  LK   +F ++F  N   +T FWCY+ K +N
Sbjct: 41  WQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK-DN 100

Query: 94  GHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           GH   +V+W +       LF RC W +CIW AK DG+Y+ N    +D     WE
Sbjct: 101 GHMNVNVFWDDVI-----LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWE 148

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BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-24
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 34  WRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNN 93
           W+V + NGL+ GETLF+HCKS+++DLG   LK   +F ++F  N   +TLFWCY+ K ++
Sbjct: 41  WQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK-DD 100

Query: 94  GHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           GH    V+W +       LF RC W +C+W AK DG+Y+ N  + +D     W+
Sbjct: 101 GHMNVKVFWDDVI-----LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWK 148

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BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 36  VDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGH 95
           V+I N L N  TL  HCKS+DDDLG   L+ G  + FSF   F+G TL++C    PN  H
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 96  AAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPW 147
            +FD+Y     +       +C    C+W  + +G    N    Q +  +PW
Sbjct: 110 -SFDIYKDHRDSGGD---NKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-10
Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 35  RVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNG 94
           RV I N   N   L +HCKS DDDLG H L  G  FG+ F  NF  +TL++C   +    
Sbjct: 47  RVTIQN--DNDYLLGIHCKSRDDDLGFHILAKGELFGWKFHVNFCYSTLYFCGFSQGQMK 106

Query: 95  HAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIY 132
              F++Y           F RC  ++C W A+ DGIY
Sbjct: 107 KGVFEIYRANRD------FYRC--ANCTWKAEKDGIY 133

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BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 35  RVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNG 94
           RV I N   N   L VHCKS DDD G H L+ G  +G+ F  NF  +TL++C   +    
Sbjct: 33  RVVIYN--DNDYLLGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVK 92

Query: 95  HAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIY 132
              FD+Y     +      +RC   +C W AK DGIY
Sbjct: 93  KGVFDIYKAVRDS------SRC--RNCTWEAKEDGIY 119

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BLAST of Lsi02G020600 vs. ExPASy TrEMBL
Match: A0A6J1DEX4 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.7e-57
Identity = 102/147 (69.39%), Postives = 118/147 (80.27%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG +KKPLGF+ +VALVLL  S VAL  W + TW VDIVN LSNG+ LFVHCKS+DDDLG
Sbjct: 1   MGGIKKPLGFVIVVALVLLGCSTVALATWPMPTWTVDIVNELSNGQELFVHCKSKDDDLG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
           +H L SG ++GF+F  N W TTLFWCYLRKP+N HAAFDVYW++ S   HWL+TRC + +
Sbjct: 61  EHNLDSGAQYGFTFKDNVWQTTLFWCYLRKPDNSHAAFDVYWYDISK-GHWLYTRCDYKN 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           CIWIAK DGIYIKNIP NQDE VHPWE
Sbjct: 121 CIWIAKADGIYIKNIPSNQDELVHPWE 146

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BLAST of Lsi02G020600 vs. ExPASy TrEMBL
Match: A0A6J1CQ33 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013534 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAW-SLLTWRVDIVNGLSNGETLFVHCKSEDDDL 60
           MG LK+PLGF+ +VALVLL  S +A  AW S  TW V+IVN L++ +TLFVHC+S+DDDL
Sbjct: 1   MGCLKEPLGFMIVVALVLLHCSTLASSAWPSWPTWHVNIVNELNSEQTLFVHCQSKDDDL 60

Query: 61  GKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWS 120
           G+H +  GT++ F+F  N WGTTLFWCYLRKPNN HA FDVYW +     +WL+TRC+W 
Sbjct: 61  GEHNISVGTQYSFAFKDNIWGTTLFWCYLRKPNNSHADFDVYWVDNGK-GYWLYTRCNWK 120

Query: 121 DCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
            CIWIAK DGIYIK+IP+NQD+ +H WE
Sbjct: 121 TCIWIAKDDGIYIKDIPVNQDQLIHKWE 147

[Close]

BLAST of Lsi02G020600 vs. ExPASy TrEMBL
Match: A0A6J1L199 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111498184 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 79/147 (53.74%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG L+  L  + +  L L+  S VA+G+W L  W V +VNGL  G+TL  HCKS++DDLG
Sbjct: 1   MGDLRMSLRNMIVATLALVAFSTVAMGSWPLERWTVQVVNGLGGGQTLLAHCKSKNDDLG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
            H L +G  F F+F  N W TT FWC L KPNN HA+FDVYW++ S  + WL+TRC    
Sbjct: 61  DHNLATGALFSFTFKDNVWQTTEFWCTLTKPNNAHASFDVYWYDTSK-DQWLYTRCGDHT 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           C+WI K DG+YIKN   NQDE VHPWE
Sbjct: 121 CVWIGKDDGVYIKNASTNQDELVHPWE 146

[Close]

BLAST of Lsi02G020600 vs. ExPASy TrEMBL
Match: A0A6J1CQW3 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 79/140 (56.43%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 7   PLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKS 66
           P   + +VA+VL+ SS     +     WRVDIVNGLS+G+TLF+HCKS+DDDLG H L  
Sbjct: 4   PKKLLILVAMVLVCSSTTTAHSTWPNKWRVDIVNGLSSGQTLFIHCKSKDDDLGIHNLAV 63

Query: 67  GTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAK 126
           G KFG++F  N WGTTLFWCY+RKP+N +A+F+VYW +  +   WL+  C+W DCIW AK
Sbjct: 64  GAKFGWNFRDNLWGTTLFWCYMRKPDNANASFEVYW-DDKSKEQWLYNFCNWEDCIWTAK 123

Query: 127 VDGIYIKNIPLNQDEFVHPW 147
            DGIYIKNI  N+DE  H W
Sbjct: 124 DDGIYIKNILGNKDELAHKW 142

[Close]

BLAST of Lsi02G020600 vs. ExPASy TrEMBL
Match: A0A6J1H5A3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111460620 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40
Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG L+  L  + +  L L+  S VA+G+W L TW V +VNGL  G+TL  HCKS++DD+G
Sbjct: 1   MGDLRMSLRNMIVATLALVAFSTVAMGSWPLETWTVQVVNGLGGGQTLLAHCKSKNDDMG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
              + +G  + F+F  N W TT FWC L KPNN HA+FDVYW++ S  + WL+TRC    
Sbjct: 61  DQNIATGALYSFTFKDNVWQTTEFWCTLTKPNNAHASFDVYWYDTSK-DQWLYTRCGDHT 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           C+WI K DG+YIKN   NQDE VHPWE
Sbjct: 121 CVWIGKDDGVYIKNASTNQDELVHPWE 146

[Close]

BLAST of Lsi02G020600 vs. NCBI nr
Match: XP_022152463.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 102/147 (69.39%), Postives = 118/147 (80.27%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG +KKPLGF+ +VALVLL  S VAL  W + TW VDIVN LSNG+ LFVHCKS+DDDLG
Sbjct: 1   MGGIKKPLGFVIVVALVLLGCSTVALATWPMPTWTVDIVNELSNGQELFVHCKSKDDDLG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
           +H L SG ++GF+F  N W TTLFWCYLRKP+N HAAFDVYW++ S   HWL+TRC + +
Sbjct: 61  EHNLDSGAQYGFTFKDNVWQTTLFWCYLRKPDNSHAAFDVYWYDISK-GHWLYTRCDYKN 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           CIWIAK DGIYIKNIP NQDE VHPWE
Sbjct: 121 CIWIAKADGIYIKNIPSNQDELVHPWE 146

[Close]

BLAST of Lsi02G020600 vs. NCBI nr
Match: XP_022143694.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-50
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAW-SLLTWRVDIVNGLSNGETLFVHCKSEDDDL 60
           MG LK+PLGF+ +VALVLL  S +A  AW S  TW V+IVN L++ +TLFVHC+S+DDDL
Sbjct: 1   MGCLKEPLGFMIVVALVLLHCSTLASSAWPSWPTWHVNIVNELNSEQTLFVHCQSKDDDL 60

Query: 61  GKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWS 120
           G+H +  GT++ F+F  N WGTTLFWCYLRKPNN HA FDVYW +     +WL+TRC+W 
Sbjct: 61  GEHNISVGTQYSFAFKDNIWGTTLFWCYLRKPNNSHADFDVYWVDNGK-GYWLYTRCNWK 120

Query: 121 DCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
            CIWIAK DGIYIK+IP+NQD+ +H WE
Sbjct: 121 TCIWIAKDDGIYIKDIPVNQDQLIHKWE 147

[Close]

BLAST of Lsi02G020600 vs. NCBI nr
Match: XP_023005093.1 (S-protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-41
Identity = 79/147 (53.74%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG L+  L  + +  L L+  S VA+G+W L  W V +VNGL  G+TL  HCKS++DDLG
Sbjct: 1   MGDLRMSLRNMIVATLALVAFSTVAMGSWPLERWTVQVVNGLGGGQTLLAHCKSKNDDLG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
            H L +G  F F+F  N W TT FWC L KPNN HA+FDVYW++ S  + WL+TRC    
Sbjct: 61  DHNLATGALFSFTFKDNVWQTTEFWCTLTKPNNAHASFDVYWYDTSK-DQWLYTRCGDHT 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           C+WI K DG+YIKN   NQDE VHPWE
Sbjct: 121 CVWIGKDDGVYIKNASTNQDELVHPWE 146

[Close]

BLAST of Lsi02G020600 vs. NCBI nr
Match: KAG6592857.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-41
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 0


Query: 1   MGVLKKPLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLG 60
           MG L+ PL  + +  L L+  S VA+G+W L TW V +VNGL  G+TL  HCKS++DD+G
Sbjct: 1   MGDLRMPLRNMIVATLALVAFSTVAMGSWPLETWTVQVVNGLGGGQTLLAHCKSKNDDMG 60

Query: 61  KHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSD 120
              + +G  + F+F  N W TT FWC L KPNN HA+FDVYW++ S  + WL+TRC    
Sbjct: 61  DQNIATGALYSFTFKDNVWQTTEFWCTLTKPNNAHASFDVYWYDTSK-DQWLYTRCGDHT 120

Query: 121 CIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           C+WI K DG+YIKN   NQDE VHPWE
Sbjct: 121 CVWIGKDDGVYIKNASTNQDELVHPWE 146

[Close]

BLAST of Lsi02G020600 vs. NCBI nr
Match: XP_022143641.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-41
Identity = 79/140 (56.43%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 7   PLGFITIVALVLLRSSMVALGAWSLLTWRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKS 66
           P   + +VA+VL+ SS     +     WRVDIVNGLS+G+TLF+HCKS+DDDLG H L  
Sbjct: 4   PKKLLILVAMVLVCSSTTTAHSTWPNKWRVDIVNGLSSGQTLFIHCKSKDDDLGIHNLAV 63

Query: 67  GTKFGFSFIPNFWGTTLFWCYLRKPNNGHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAK 126
           G KFG++F  N WGTTLFWCY+RKP+N +A+F+VYW +  +   WL+  C+W DCIW AK
Sbjct: 64  GAKFGWNFRDNLWGTTLFWCYMRKPDNANASFEVYW-DDKSKEQWLYNFCNWEDCIWTAK 123

Query: 127 VDGIYIKNIPLNQDEFVHPW 147
            DGIYIKNI  N+DE  H W
Sbjct: 124 DDGIYIKNILGNKDELAHKW 142

[Close]

BLAST of Lsi02G020600 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 34  WRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNN 93
           W+V +VNGL+ GETLF+HCKS++DDLG+  LK   +F ++F  N   +T FWCY+ K +N
Sbjct: 41  WQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK-DN 100

Query: 94  GHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           GH   +V+W +       LF RC W +CIW AK DG+Y+ N    +D     WE
Sbjct: 101 GHMNVNVFWDDVI-----LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWE 148

[Close]

BLAST of Lsi02G020600 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-25
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 34  WRVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNN 93
           W+V + NGL+ GETLF+HCKS+++DLG   LK   +F ++F  N   +TLFWCY+ K ++
Sbjct: 41  WQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK-DD 100

Query: 94  GHAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPWE 148
           GH    V+W +       LF RC W +C+W AK DG+Y+ N  + +D     W+
Sbjct: 101 GHMNVKVFWDDVI-----LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWK 148

[Close]

BLAST of Lsi02G020600 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 77.8 bits (190), Expect = 8.1e-15
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 36  VDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGH 95
           V+I N L N  TL  HCKS+DDDLG   L+ G  + FSF   F+G TL++C    PN  H
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 96  AAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEFVHPW 147
            +FD+Y     +       +C    C+W  + +G    N    Q +  +PW
Sbjct: 110 -SFDIYKDHRDSGGD---NKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Lsi02G020600 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 35  RVDIVNGLSNGETLFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNG 94
           +V + N L + + L VHC+S+DDDLG+H LK G  + F+F  N W TT F C + +  N 
Sbjct: 28  KVVLSNQLEHSKLLKVHCRSKDDDLGEHILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNF 87

Query: 95  HAAFDVYWFEGSTLNHWLFTRCSWSDCIWIAKVDGIY 132
               D   +E S      +++   + C WI + DGIY
Sbjct: 88  KHHLDFVAYETS------WSKALEASCKWIGREDGIY 118

[Close]

BLAST of Lsi02G020600 vs. TAIR 10
Match: AT1G28305.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 39/104 (37.50%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 48  LFVHCKSEDDDLGKHKLKSGTKFGFSFIPNFWGTTLFWCYLRKPNNGHAA--FDVYWFEG 107
           LFV CKS   D+GKH +K G  + F    NFW TTLFWC  R   +      FDVY ++ 
Sbjct: 41  LFVQCKSGKADMGKHYVKYGKIYQFDIRDNFWKTTLFWCTFRHGPDYRTGQQFDVYEYKP 100

Query: 108 STLNHWLFTRCSWSDCIWIAKVDGIYIKNIPLNQDEF--VHPWE 148
                  +         W A+ DGIY +   LNQ     VH W+
Sbjct: 101 GVAQGGTYE--------WTAREDGIYFR---LNQGTIHKVHNWK 133

The following BLAST results are available for this feature:

BLAST of Lsi02G020600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	1.5e-26	45.61	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	5.5e-24	42.11	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F4JLQ5	1.1e-13	36.04	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
P0DN92	7.7e-10	39.18	S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1	[more]
F2Q9V4	1.0e-09	39.18	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]

BLAST of Lsi02G020600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEX4	8.7e-57	69.39	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1	[more]
A0A6J1CQ33	1.2e-50	62.16	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013534 PE=3 SV=1	[more]
A0A6J1L199	1.8e-41	53.74	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111498184 PE=3 SV=1	[more]
A0A6J1CQW3	2.3e-41	56.43	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1	[more]
A0A6J1H5A3	1.9e-40	51.70	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111460620 PE=3 SV=1	[more]

BLAST of Lsi02G020600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152463.1	1.8e-56	69.39	S-protein homolog 1-like [Momordica charantia]	[more]
XP_022143694.1	2.5e-50	62.16	S-protein homolog 1-like [Momordica charantia]	[more]
XP_023005093.1	3.6e-41	53.74	S-protein homolog 1-like [Cucurbita maxima]	[more]
KAG6592857.1	4.7e-41	52.38	S-protein-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022143641.1	4.7e-41	56.43	S-protein homolog 1-like [Momordica charantia]	[more]

BLAST of Lsi02G020600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	1.1e-27	45.61	S-protein homologue 1	[more]
AT4G29035.1	3.9e-25	42.11	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	8.1e-15	36.04	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	1.7e-12	37.11	Plant self-incompatibility protein S1 family	[more]
AT1G28305.1	2.4e-11	37.50	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 36..146 e-value: 1.1E-27 score: 96.6
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 26..132
None	No IPR available	PANTHER	PTHR31232:SF34	PUTATIVE-RELATED	coord: 26..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G020600.1	Lsi02G020600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region