Lsi02G020590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G020590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Acanthoscurrin-1-like
Location	chr02: 26743318 .. 26743707 (+)
RNA-Seq Expression	Lsi02G020590
Synteny	Lsi02G020590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGTTCATGGTTTTGCTCTTGGCTCTTGTGGCCACTCAAACCCTAGCTAGACCTACACCAAATGATGCCACCTTCAGTGACCAAAAGAACTTCCTAACCTACGGCGGCGTCGGTGGCTACTCCGGCATTGGTGCCAATGGCTTCCCATTCGGTGGTTTGGGGGGCGCTGTTGGAGGAACTGGCCTCGGTGGCGGTCTCGGTGGTGGCCTCGGTGGCGCTACGGGAATTGGTGGACTAGGTGGACTGGGAGGCGTTGGAGGCGGATTAGGTGGGGGTGGCCTTGGTGGGACTGTTGGCGGAGCTACTGGTGGTCTCGGTGGTGGTCTCGGTGGCGGTCTCGGTGGTGGTGTTGGTGGAGCTTCTGGTGTTACTTATCCTTGA

mRNA sequence

ATGGCCAAATTGTTCATGGTTTTGCTCTTGGCTCTTGTGGCCACTCAAACCCTAGCTAGACCTACACCAAATGATGCCACCTTCAGTGACCAAAAGAACTTCCTAACCTACGGCGGCGTCGGTGGCTACTCCGGCATTGGTGCCAATGGCTTCCCATTCGGTGGTTTGGGGGGCGCTGTTGGAGGAACTGGCCTCGGTGGCGGTCTCGGTGGTGGCCTCGGTGGCGCTACGGGAATTGGTGGACTAGGTGGACTGGGAGGCGTTGGAGGCGGATTAGGTGGGGGTGGCCTTGGTGGGACTGTTGGCGGAGCTACTGGTGGTCTCGGTGGTGGTCTCGGTGGCGGTCTCGGTGGTGGTGTTGGTGGAGCTTCTGGTGTTACTTATCCTTGA

Coding sequence (CDS)

ATGGCCAAATTGTTCATGGTTTTGCTCTTGGCTCTTGTGGCCACTCAAACCCTAGCTAGACCTACACCAAATGATGCCACCTTCAGTGACCAAAAGAACTTCCTAACCTACGGCGGCGTCGGTGGCTACTCCGGCATTGGTGCCAATGGCTTCCCATTCGGTGGTTTGGGGGGCGCTGTTGGAGGAACTGGCCTCGGTGGCGGTCTCGGTGGTGGCCTCGGTGGCGCTACGGGAATTGGTGGACTAGGTGGACTGGGAGGCGTTGGAGGCGGATTAGGTGGGGGTGGCCTTGGTGGGACTGTTGGCGGAGCTACTGGTGGTCTCGGTGGTGGTCTCGGTGGCGGTCTCGGTGGTGGTGTTGGTGGAGCTTCTGGTGTTACTTATCCTTGA

Protein sequence

MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAVGGTGLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGGLGGGVGGASGVTYP

Homology

[Close]

BLAST of Lsi02G020590 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.9e-34
Identity = 112/132 (84.85%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG+NG PFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLG--GGGLGGTVGGATGGLGGGLGGGLG 120
           GG GLGGGLGGGLGGATGI GGLGGLGG GGGLG  GG  GG  GG  GGLGGGLGGGLG
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLG 120

Query: 121 GGVGGASGVTYP 130
           GGVGGASGVTYP
Sbjct: 121 GGVGGASGVTYP 132

[Close]

BLAST of Lsi02G020590 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.7e-33
Identity = 111/134 (82.84%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG NG PFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  G----GTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGG 120
           G    G GLGGGLGGGLGG TGI GGLGGLGG GGG   GG+GGT GG  GGLGGGLGGG
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGF--GGIGGTTGGLGGGLGGGLGGG 120

Query: 121 LGGGVGGASGVTYP 130
           LGGGVGGASGVTYP
Sbjct: 121 LGGGVGGASGVTYP 132

[Close]

BLAST of Lsi02G020590 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 107/127 (84.25%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 6   MVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAVGGTGL 65
           M LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG+NG PFGG+GGA+GG GL
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGGLGGGLGGATGI-GGLGGLGGVGGGLG--GGGLGGTVGGATGGLGGGLGGGLGGGVGG 125
           GGGLGGGLGGATGI GGLGGLGG GGGLG  GG  GG  GG  GGLGGGLGGGLGGGVGG
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLGGGVGG 120

Query: 126 ASGVTYP 130
           ASGVTYP
Sbjct: 121 ASGVTYP 127

[Close]

BLAST of Lsi02G020590 vs. ExPASy TrEMBL
Match: A0A6J1CPV7 (glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111013480 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.4e-28
Identity = 103/134 (76.87%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLAR--PTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGG 60
           MAK+FM LLLALVAT  +AR  PTP DATF DQKNF TYGG+GGYSGIG NG PFGG+GG
Sbjct: 1   MAKVFMTLLLALVATHAMARPTPTPTDATFKDQKNFFTYGGLGGYSGIGNNGLPFGGVGG 60

Query: 61  AVGGTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLGG--GGLGGTVGGATGGLGGGLGGG 120
           AVGG GLGGGLGGGLGG TGI GGLGGLGG GGGLGG  GG+GGT+GG  GG  GGLGGG
Sbjct: 61  AVGGGGLGGGLGGGLGGGTGIGGGLGGLGGTGGGLGGNVGGIGGTIGG--GGASGGLGGG 120

Query: 121 LGGGVGGASGVTYP 130
           LGGG+GG S + YP
Sbjct: 121 LGGGLGGGSALPYP 132

[Close]

BLAST of Lsi02G020590 vs. ExPASy TrEMBL
Match: A0A6J1H8T3 (acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 98/135 (72.59%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM +LLAL+AT  LARPTP DATF+DQKNFLTYGG+GGYSGIG+NG PFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGTVGGAT------GGLGGGLGG 120
           GGTG  GG+GGG+GG  G GG GG  G+GGGLGGGGLGGT+GG        G +GGGLGG
Sbjct: 61  GGTG-PGGIGGGIGGLGGFGG-GGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGG 120

Query: 121 GLGGGVGGASGVTYP 130
           GLGGGVGG  G   P
Sbjct: 121 GLGGGVGGGGGSGLP 133

[Close]

BLAST of Lsi02G020590 vs. NCBI nr
Match: XP_038898765.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 119/133 (89.47%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT TLARPTPN+ATF+DQKNFLTYGGVGGYSGIG NG PFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATTTLARPTPNEATFNDQKNFLTYGGVGGYSGIGGNGLPFGGVGGAI 60

Query: 61  GGT----GLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGGL 120
           GGT    GLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGT+GG TGGLGGGLGGGL
Sbjct: 61  GGTGLGGGLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGTIGGTTGGLGGGLGGGL 120

Query: 121 GGGVGGASGVTYP 130
           GGGVGGASGVTYP
Sbjct: 121 GGGVGGASGVTYP 133

[Close]

BLAST of Lsi02G020590 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 112/132 (84.85%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG+NG PFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLG--GGGLGGTVGGATGGLGGGLGGGLG 120
           GG GLGGGLGGGLGGATGI GGLGGLGG GGGLG  GG  GG  GG  GGLGGGLGGGLG
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLG 120

Query: 121 GGVGGASGVTYP 130
           GGVGGASGVTYP
Sbjct: 121 GGVGGASGVTYP 132

[Close]

BLAST of Lsi02G020590 vs. NCBI nr
Match: XP_011659762.1 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 111/134 (82.84%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG NG PFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  G----GTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGG 120
           G    G GLGGGLGGGLGG TGI GGLGGLGG GGG   GG+GGT GG  GGLGGGLGGG
Sbjct: 61  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGF--GGIGGTTGGLGGGLGGGLGGG 120

Query: 121 LGGGVGGASGVTYP 130
           LGGGVGGASGVTYP
Sbjct: 121 LGGGVGGASGVTYP 132

[Close]

BLAST of Lsi02G020590 vs. NCBI nr
Match: KAE8646236.1 (hypothetical protein Csa_016187 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 111/134 (82.84%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAV 60
           MAKLFM LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG NG PFGGLGGA+
Sbjct: 38  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 97

Query: 61  G----GTGLGGGLGGGLGGATGI-GGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGG 120
           G    G GLGGGLGGGLGG TGI GGLGGLGG GGG   GG+GGT GG  GGLGGGLGGG
Sbjct: 98  GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGF--GGIGGTTGGLGGGLGGGLGGG 157

Query: 121 LGGGVGGASGVTYP 130
           LGGGVGGASGVTYP
Sbjct: 158 LGGGVGGASGVTYP 169

[Close]

BLAST of Lsi02G020590 vs. NCBI nr
Match: XP_008462124.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-31
Identity = 107/127 (84.25%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 6   MVLLLALVATQTLARPTPNDATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGAVGGTGL 65
           M LLLALVAT  LARPTP D TFSDQKNFLTYGGVGGYSGIG+NG PFGG+GGA+GG GL
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGGLGGGLGGATGI-GGLGGLGGVGGGLG--GGGLGGTVGGATGGLGGGLGGGLGGGVGG 125
           GGGLGGGLGGATGI GGLGGLGG GGGLG  GG  GG  GG  GGLGGGLGGGLGGGVGG
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLGGGVGG 120

Query: 126 ASGVTYP 130
           ASGVTYP
Sbjct: 121 ASGVTYP 127

[Close]

BLAST of Lsi02G020590 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 65/128 (50.78%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 1   MAKLFMVLLLALVATQTLARPTPN-DATFSDQKNFLTYGGVGGYSGIGANGFPFGGLGGA 60
           MAK F  + L       LA    N     SDQKN+L YG  GGYSG+G NG PFGG+GG 
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVPVGLSDQKNYLGYG--GGYSGVGDNGLPFGGVGGG 60

Query: 61  VGGTGLGGGLGGGLGGATGIGGLGGLGGVGGGLGGGGLGGTVGGATGGLGGGLGGGLGGG 120
           V G G             G  G GG GG GGGL GGGLG   GGA  GLGGGLGGG G G
Sbjct: 61  VSGPG-------------GNLGYGGFGGAGGGL-GGGLG---GGAGSGLGGGLGGGSGIG 109

Query: 121 VGGASGVT 128
            G + G T
Sbjct: 121 AGTSGGST 109

The following BLAST results are available for this feature:

BLAST of Lsi02G020590 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G020590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U5T7	6.9e-34	84.85	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A0A0K9U1	7.7e-33	82.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]
A0A1S3CGR1	2.5e-31	84.25	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]
A0A6J1CPV7	4.4e-28	76.87	glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111013480 PE=4...	[more]
A0A6J1H8T3	3.4e-25	72.59	acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1	[more]

BLAST of Lsi02G020590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898765.1	9.3e-41	89.47	acanthoscurrin-1-like [Benincasa hispida]	[more]
KAA0050560.1	1.4e-33	84.85	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]
XP_011659762.1	1.6e-32	82.84	glycine-rich protein 5 [Cucumis sativus]	[more]
KAE8646236.1	1.6e-32	82.84	hypothetical protein Csa_016187 [Cucumis sativus]	[more]
XP_008462124.1	5.1e-31	84.25	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]

BLAST of Lsi02G020590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	1.3e-05	50.78	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G020590.1	Lsi02G020590.1	mRNA