Lsi02G019870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G019870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TonB-dependent heme receptor A
Location	chr02: 25812389 .. 25813841 (-)
RNA-Seq Expression	Lsi02G019870
Synteny	Lsi02G019870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTCCTCATAAAAGCTTCATTGTCATTGGAGATGAGAATGGAGTCGGTGAACAAAAGATGATTTATTAGAGGAGAGTCATTTCTCACTAAGAAACCTTTAATAAAATCATGTTTTGATGCCAAAGCAAGAGTACAGCTTAGGAAATCCATCATAGTAATAGAGAAGAAGGGGACCAAGGGATCCCTTGCCTAATTCCTTTGGTGGCTCTGAATTTACCTCTCAGCTTGCCATTGATGATAATAGAAAAGTTTGTTGATGAAATACAACTTCTAATCCAAGGTCTCCTTTTAGTTCCTAAGCCTTTGACTTTTTCAACATCTCATCGAGGAAGTACCATCAACCTTGTCAAAAGTTTTTCGACATCAAGTTTTATGAGCACATCATTTTGCTTTTTTTATGCCAAGCTTCAGTTGATCTCATTGGCTATGAGCAATGCATCCAATATTTGTCTTCCTTCAACCAACGCTAAATTTTTTCTTAGTGATCCAATTGAGATATTTTAATGTCTTTACAATTCTGGTGCTGGCGATATGGTATATTGGATTTCCTATTTGCAAACTATTATTTCACTCAAAAAGTTCAATCAATCATTTTTGTGTAGTTACATCAAATATGCGATCATAGTAATGTCTAGTGCAAAGTGTAACTTCCAGTGGAAAATCATGGTATCACATATTTCAAAATTCATAGTCATATAAATACTGTGAATTTCACATTTGAATTTTGTCGAAGATTTCAGATCTGGGTTCTGTCCCAAACAAACTTTTACCACTTGGAATTTATGGATTAGTACAGAGCTGTCTCATGATAATAGTCTCTAAGAAGCATTGATACTCTAGTTTGGGTAACATGTCCATTTCACGATATATATATATATATATATATATATATATCAGATACTAGCGGTAGAAAGTCAATGTGATTTAAACCCTCGTTAGGCATGTACCTTTCACTTGATAGACATAATAGTAATGAAGAACAAAATTAACAAATTTTAAGTATCGGGTGCATTTAGCATATGAATGCATAAGCTTCTTAACTTTTTAGTTTTTTGGTATGAAAATTATACATTTGAAGAAAATGGTGCGCCATCTTGTTCTTGTTTTCTGTTCGTATCTGTGTTTTATAGATATTCTATCCATTAGTCCTAATTCGTGATGTTCATGTACCAATCAAGGTTTCTAAATCCTAAAAAATGATGGTTCTGTCTGACCTCATGCCGCAGCTAATCGAGGGTTTCACTCAACTGGTGTGAAGAGAATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

mRNA sequence

ATGAAGCTTCCTCATAAAAGCTTCATTGTCATTGGAGATGAGAATGGAGTCGCTAATCGAGGGTTTCACTCAACTGGTGTGAAGAGAATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Coding sequence (CDS)

ATGAAGCTTCCTCATAAAAGCTTCATTGTCATTGGAGATGAGAATGGAGTCGCTAATCGAGGGTTTCACTCAACTGGTGTGAAGAGAATGGGAGGACATGCCCACGGACATGACGAACCGTATTATTTGCACGCAAAGCATATGTACAACTTGGATAGGATGAAAAATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTTAGCATTGGCGTGGGTGTTCCAATCTACGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Protein sequence

MKLPHKSFIVIGDENGVANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTASG

Homology

[Close]

BLAST of Lsi02G019870 vs. ExPASy TrEMBL
Match: A0A0A0LQ20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.1e-33
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAV+FQQKKTASG
Sbjct: 85 YAVVFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. ExPASy TrEMBL
Match: A0A6J1CR70 (uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013498 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPI
Sbjct: 25 ANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAVIFQQKKTASG
Sbjct: 85 YAVIFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. ExPASy TrEMBL
Match: A0A1S3B3R2 (uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTAS 90
          YAV+FQQKKTAS
Sbjct: 85 YAVVFQQKKTAS 96

[Close]

BLAST of Lsi02G019870 vs. ExPASy TrEMBL
Match: A0A6J1FDG6 (uncharacterized protein LOC111443011 OS=Cucurbita moschata OX=3662 GN=LOC111443011 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-32
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTL VLTAFSIGVGVPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLAVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTASG 91
          +AV+FQQKKTASG
Sbjct: 85 FAVVFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. ExPASy TrEMBL
Match: A0A6J1IGC8 (uncharacterized protein LOC111476990 OS=Cucurbita maxima OX=3661 GN=LOC111476990 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRG HSTGVK+MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI
Sbjct: 25 ANRGIHSTGVKKMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTASG 91
          +AV+FQQKKT SG
Sbjct: 85 FAVVFQQKKTVSG 97

[Close]

BLAST of Lsi02G019870 vs. NCBI nr
Match: XP_004138643.2 (uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical protein Csa_022386 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAV+FQQKKTASG
Sbjct: 85 YAVVFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. NCBI nr
Match: XP_038899385.1 (uncharacterized protein LOC120086696 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAVIFQQKKTASG
Sbjct: 85 YAVIFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. NCBI nr
Match: XP_011659116.1 (uncharacterized protein LOC101215354 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          A RGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGV VPI
Sbjct: 25 AKRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVAVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAV+FQQKKTASG
Sbjct: 85 YAVVFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. NCBI nr
Match: XP_022143637.1 (uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncharacterized protein LOC111013498 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTG KRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGV TAFSIGV VPI
Sbjct: 25 ANRGFHSTGAKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVFTAFSIGVAVPI 84

Query: 78 YAVIFQQKKTASG 91
          YAVIFQQKKTASG
Sbjct: 85 YAVIFQQKKTASG 97

[Close]

BLAST of Lsi02G019870 vs. NCBI nr
Match: XP_008441241.1 (PREDICTED: uncharacterized protein LOC103485430 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 9.3e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 18 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVGVPI 77
          ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMK QKLTMTLGVLTAFSIGVGVPI
Sbjct: 25 ANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPI 84

Query: 78 YAVIFQQKKTAS 90
          YAV+FQQKKTAS
Sbjct: 85 YAVVFQQKKTAS 96

[Close]

BLAST of Lsi02G019870 vs. TAIR 10
Match: AT1G72020.1 (unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-25
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 7  SFIVIGDENGVA---NRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTL 66
          S I+   E  V+    R FHSTGVK+M G  HG  + YYLHAKHMYNLDRMK Q L M+L
Sbjct: 11 SKIIASSEASVSRSVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSL 70

Query: 67 GVLTAFSIGVGVPIYAVIFQQKKTASG 91
          GV TAFSIGVGVPI+AV+FQQ+KT SG
Sbjct: 71 GVFTAFSIGVGVPIFAVVFQQRKTQSG 97

The following BLAST results are available for this feature:

BLAST of Lsi02G019870 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G019870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ20	9.1e-33	97.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1	[more]
A0A6J1CR70	3.5e-32	95.89	uncharacterized protein LOC111013498 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A1S3B3R2	4.5e-32	97.22	uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=...	[more]
A0A6J1FDG6	5.9e-32	94.52	uncharacterized protein LOC111443011 OS=Cucurbita moschata OX=3662 GN=LOC1114430...	[more]
A0A6J1IGC8	1.0e-31	93.15	uncharacterized protein LOC111476990 OS=Cucurbita maxima OX=3661 GN=LOC111476990...	[more]

BLAST of Lsi02G019870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138643.2	1.9e-32	97.26	uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63316.2 hypothetical ...	[more]
XP_038899385.1	2.5e-32	97.26	uncharacterized protein LOC120086696 [Benincasa hispida]	[more]
XP_011659116.1	5.5e-32	95.89	uncharacterized protein LOC101215354 [Cucumis sativus]	[more]
XP_022143637.1	7.2e-32	95.89	uncharacterized protein LOC111013498 [Momordica charantia] >XP_022143638.1 uncha...	[more]
XP_008441241.1	9.3e-32	97.22	PREDICTED: uncharacterized protein LOC103485430 [Cucumis melo]	[more]

BLAST of Lsi02G019870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72020.1	5.3e-25	65.52	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36003	TONB-DEPENDENT HEME RECEPTOR A	coord: 17..90
None	No IPR available	PANTHER	PTHR36003:SF5	TONB-DEPENDENT HEME RECEPTOR A	coord: 17..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G019870.1	Lsi02G019870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane