Lsi02G019480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G019480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonuclease P
Location	chr02: 25373868 .. 25377407 (+)
RNA-Seq Expression	Lsi02G019480
Synteny	Lsi02G019480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAACCCCAAAAACAAAAAAGGAACCCAGCTTCATCTTCTCCCCCTCTCCCTCACACAGCCGCCGCCGCCCCCTTGCTCAATCTCGTTCGCCGGCGACTACACAGCAAACCCACAAGCAGCGGCGGTGGCCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCGTTCCCTTGCTCAACGATCGACGGCGGTGGTTCGGTGTCGGAAGCGCACGGATCTAGCGTGCGACGCGGGCACCACTTCAGACGCCCTTGCTCGGACCTTCGCAACAACGTTTCTCTCCGTTTCGACGAGTTTCGGCGCTGACCCACACCCCAATTGGTCTCAAATCAGTTTACCCATAACGTTTAAGGTTCAGTTCGGCTAGCTCGATCGTTTTTGAACACCAACCAGCAAGGATCAGAGCCTCTTCGGTAAGATTTTGTAATGATAGTTGCTTTAATTTTCTTTTCGAATTCGATTAAGTGTTCAAAAATTCTGACCCACTAGAACTCATCGGTTGTTATGTTTGGGTGTTCAATTAAGTTCCACAAGTATTAACATGCCTTGAGCCATTTCGGACTCAATTAATGGATGTTAGACCAGTCTTTGACTTGTAAAAGTTTGTTGTTCGTAGTTTTGGACTAATTCAGAGTGATTGGTTAAGGTTTATGGTTGATTTTAGATAAGGATGTCATTATCTCGATTTCAAATAAGGTTCTTGAATTGAGTTCAAATTTCTAAACTTCGTCTTGATTATTTAGATTTCGAGGAAGTTGACATTTGTTCAAAAGTGAATTTTTAATTGAGAATTGTAGGATTGTCGATCATAGTTTTCACATCCATTCCAAAATATAAATTAGTTCAATTATGTTTTTACTATTATGACTTGACAAATGTTTGAAAGTATGTTATATGTGATTTGAAAATTGATTGAAATTGTTTGGTATGTTTTAACGGTTTTTGCTAAATGAAAGTATGTGATTATTTTGAAAGCTTAGCATGGCCCTGCGCAAGGATTTTTGTTTACAAATGTTTGGAAAGAAAATGGATTTCAAAGCATGATACAAAAATTGCTTATTGAGTATTTTTGTACTCAATTTTGTTTTTCTGAAATGTTTTTAGATGAAGAATTAGATTAAAGTTTTGAAAGCAGTGAAGTTTGGAGTTTTGGTGCAAGGTGTCAAAAGATATTTCTTTTAGGTTATGAAAGGTTATCCTAGAAATAGTCTGTAATAAGTTGCTTCCGCTGATGTGTGCAAGTTGTCAAAATTTCTAATTGTTATGTTTTCTTCATTTTTGTTATAATAGTTGTATTGGAAAATACAAGCTATTCTAGGGATCACATCCTTTGGAAATGAGAATTCGTGCTCCCTGTCTAGATTTGTTTTCCTAGAGGTTTGGTTTTGTGCTCGCCCATCAAAGGGACATTAGTGTTTATGATGGGAGAGTTTCTTCTCCATCTGCCCTTTTGTTTGAAAGGTTGTTTCTTGTGGTTGGTTGGCGCGTGTGTTAATGTGGAATCTTTGGAGAGAAAGGAATAAATCGAGTGTTTAGAGCGTTGGACAAGGAACCTAGTGATGTATATGCCCTTATCAGGTTTCGTGTTTCCCTTAGGGTTTTGACTTCAAAGTTTTTTTTTTTAATTTTTTTTAATTCTTGATTGGACCATTTTCTTTAGCGGGATTCCTAACTTGGATGTTCGTAAACCCTTGTATTCTTTCATTTTTTTCTCAATAGTAGTGGTTGCTTTATTAAGAAAAAAAGAGTTTAGTGATCTTTGACTGGCTGCTTTTATGGTGGAAGATTTAGTTTGTGAGTTTTGTTTGATATCAGGTGATTATCTTTGTTTTCTTCTTTCCTTTTAGGCATATTTTGTTATCGAAATTAGAAGGAACAAAGCAATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGGTAGATAAAACTGCATCATACTAATACTTTCTTCAACTTCCATTTGTGTTAACATCATACATATATATTTATATAGCTTAATCTTTCTTCTTGCCTTCTTGGTGTTTATGTAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGTAAGTTTGTTTTTTAGGATCACTGTTTATAGTGTTGACTATTCCCATCTGGCTATAGACAATTGTGCTTGAAGGATGTAATCAGGAAGTGACATGACAAGTTTTGAAATTGTAAATAATTTGAACTCCCTTTTTCCTTTTTGCTCTTATTCATTTTTTTGATTTAGAAAAGAAGGGACCTTAGTAATCATCATGAATTGGCATGTGATCAATAATGCCGACGTAAATAGGAAAGGGCTTTGAGGAAATGGATTTAAACCATGGTGACCACCTATTTAAGAATTAATATCTTACGAGTTACTTTGACAACGAAATGTAGTAGACAGTCTAGCGATTGGCTCATGAGAATAATCGAGATTGTACAAGTTGATCTAGAAACTCACTAATGTTTATTTTTATTTTTTTATTTTCTTTTGTGAAGAAAAAGAAAAAATCTGGGGTGTGTATCTGCACAGCATTCTTTTATATAGTGGCGAAAGTTACAAGTGGTAAAAGCTAAAGGGAAATTGCAAAAGTAAATTGTTTTTTGCTATATTATCTTACACTATTTTCAATTCTGGTTAGGGTGGAATTCAAATAACCAATTTTTTTGGTTTTGTATACCCTATGATTGGATCCTTTTGTATCCTTGGATATCTTTGGATATTTCATTCAATCAATTAAATTGTCTCTTATCTCAAAAAAAAAAAAAAATGACCAACATTGGTGGTTTTTCTTTTTTCCCCACTTGAGGGGTTTGATGATATGATTTCTTACTTGTATAAGTCGCCAATATAATTTAACAAATCACATTCACTTTCTTTTATTTTTTTTTACAGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGATTGTATTGTTGGCATGTATATATTAAGTCCATTCCAAGTGAAATTTTAGTTAGATAGATTACTTCATTCCCAGACATTTTTATTCCTTGCACTAGTTGCCCTTTGTATTTATTTCGTTTTGTTTAGATGTATGAGATAATTATCTTGAATTTATATCTAGTAGTTGTTAAAGATATGAAATTCACATTCACAGATGAGACGGTCACATTGTGACAACTTCATTGAATAAATTTTCATTGTTTG

mRNA sequence

GGAAAACCCCAAAAACAAAAAAGGAACCCAGCTTCATCTTCTCCCCCTCTCCCTCACACAGCCGCCGCCGCCCCCTTGCTCAATCTCGTTCGCCGGCGACTACACAGCAAACCCACAAGCAGCGGCGGTGGCCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCGTTCCCTTGCTCAACGATCGACGGCGGTGGTTCGGTGTCGGAAGCGCACGGATCTAGCGTGCGACGCGGGCACCACTTCAGACGCCCTTGCTCGGACCTTCGCAACAACGTTTCTCTCCGTTTCGACGAGTTTCGGCGCTGACCCACACCCCAATTGGTCTCAAATCAGTTTACCCATAACGTTTAAGGTTCAGTTCGGCTAGCTCGATCGTTTTTGAACACCAACCAGCAAGGATCAGAGCCTCTTCGGCATATTTTGTTATCGAAATTAGAAGGAACAAAGCAATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGATTGTATTGTTGGCATGTATATATTAAGTCCATTCCAAGTGAAATTTTAGTTAGATAGATTACTTCATTCCCAGACATTTTTATTCCTTGCACTAGTTGCCCTTTGTATTTATTTCGTTTTGTTTAGATGTATGAGATAATTATCTTGAATTTATATCTAGTAGTTGTTAAAGATATGAAATTCACATTCACAGATGAGACGGTCACATTGTGACAACTTCATTGAATAAATTTTCATTGTTTG

Coding sequence (CDS)

ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGA

Protein sequence

MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN

Homology

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BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-48
Identity = 98/155 (63.23%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           + +FEQ        L +    QM   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

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BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot
Match: Q9UU90 (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MVRFK+RY++ EVL    K+   D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTA 120
            S  VKY +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ +SG  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LKLDELRFEQYKLM 130
           ++ ++       LM
Sbjct: 121 IERNKSEIHNISLM 133

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BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot
Match: Q54EP3 (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=44689 GN=pop5 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 36/118 (30.51%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVR KNRY++ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKL 119
            YVNP T + IIR S E Y+++W A+T++ +    P+ F ++ + G+ R C+  A+K+
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

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BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot
Match: Q969H6 (Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-10
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MVRFK+RY++ E++  DP   L  DD ++      S  ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISN----CPVVFNLLDLSGNTRACK 113
           V+Y+N  T + ++R  +E YQ VW+A+  +  + N     P  FN L + G  R C+
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111

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BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot
Match: Q1JQ92 (Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MVRFK+RY++ EV+  DP   L  +D ++ T       ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISN----CPVVFNLLDLSGNTRACK 113
           V+Y+N  T + ++R  +E Y+ VW+A+  + ++ N     P   N L + G  R C+
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFLNTLHVGGTIRTCQ 111

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BLAST of Lsi02G019480 vs. ExPASy TrEMBL
Match: A0A5D3CDD4 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 142/154 (92.21%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNV +QMQNCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKIANLEN 154

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BLAST of Lsi02G019480 vs. ExPASy TrEMBL
Match: A0A1S3CEI9 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 141/154 (91.56%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNV + MQNCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

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BLAST of Lsi02G019480 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.4e-72
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN+RACKNTAL++DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG R+ D VNLQMQNCLEKI TL+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

[Close]

BLAST of Lsi02G019480 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 135/154 (87.66%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN+RACKNTAL+LDE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG R+ D VNLQMQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 154

[Close]

BLAST of Lsi02G019480 vs. ExPASy TrEMBL
Match: A0A6J1CLH1 (Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 125/151 (82.78%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVR++NRY++LEV+LDP KD  TDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVRTI NCPV+FNLLDL+GNTRACKNTAL+ +E
Sbjct: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITT 152
           L+FEQYKLMVG RL D+VNLQMQNCLEKI T
Sbjct: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRT 151

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BLAST of Lsi02G019480 vs. NCBI nr
Match: XP_038899949.1 (probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 7.8e-79
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTAL+LD+
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALRLDK 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGHRLPDNVNLQMQNCLEKI TLE+
Sbjct: 121 LKFEQYKLMVGHRLPDNVNLQMQNCLEKIATLES 154

[Close]

BLAST of Lsi02G019480 vs. NCBI nr
Match: XP_004139703.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >KGN44681.2 hypothetical protein Csa_016863 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 3.6e-76
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITK+CIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+L+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNVNLQMQNCLEKI TLEN
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]

BLAST of Lsi02G019480 vs. NCBI nr
Match: KAA0061295.1 (putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK09873.1 putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 142/154 (92.21%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNV +QMQNCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKIANLEN 154

[Close]

BLAST of Lsi02G019480 vs. NCBI nr
Match: XP_008461474.1 (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo] >XP_008461476.1 PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 141/154 (91.56%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNV + MQNCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]

BLAST of Lsi02G019480 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 7.1e-72
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN+RACKNTAL++DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG R+ D VNLQMQNCLEKI TL+N
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLDN 154

[Close]

BLAST of Lsi02G019480 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-49
Identity = 98/155 (63.23%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 1   MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           + +FEQ        L +    QM   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

The following BLAST results are available for this feature:

BLAST of Lsi02G019480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	2.0e-48	63.23	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]
Q9UU90	1.2e-13	32.84	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
Q54EP3	1.5e-11	30.51	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=...	[more]
Q969H6	3.6e-10	33.33	Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=...	[more]
Q1JQ92	1.2e-08	31.62	Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1	[more]

BLAST of Lsi02G019480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDD4	4.3e-75	92.21	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 ...	[more]
A0A1S3CEI9	1.6e-74	91.56	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1	[more]
A0A6J1IBH7	3.4e-72	88.31	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A6J1EVL4	1.0e-71	87.66	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A6J1CLH1	3.3e-67	82.78	Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1	[more]

BLAST of Lsi02G019480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899949.1	7.8e-79	96.75	probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]	[more]
XP_004139703.1	3.6e-76	93.51	probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus] >XP_011659093...	[more]
KAA0061295.1	9.0e-75	92.21	putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008461474.1	3.4e-74	91.56	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo] >XP_0...	[more]
XP_022972913.1	7.1e-72	88.31	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]

BLAST of Lsi02G019480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	1.4e-49	63.23	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002759	RNase P subunit Pop5/Rpp14/Rnp2-like	PFAM	PF01900	RNase_P_Rpp14	coord: 7..115 e-value: 1.6E-26 score: 92.5
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..120 e-value: 5.2E-31 score: 109.1
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..119
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..137
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G019480.1	Lsi02G019480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030677	ribonuclease P complex
molecular_function	GO:0004526	ribonuclease P activity
molecular_function	GO:0033204	ribonuclease P RNA binding