Lsi02G018990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G018990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
Location	chr02: 24924275 .. 24925180 (+)
RNA-Seq Expression	Lsi02G018990
Synteny	Lsi02G018990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCTCTCTCAATCTTCTTCAACTTCAAGCAAATCCAGCACTGCCCAAGTTCTTCAAATGGAACCCGGTCCGACCGGCGGTGTATTTCAGAGCTCCGACGAGGTCAACCATCGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCCATAAATGAAGATATTGAGGATCATCTCCGGCGGGTCATTCCGGCGAAGGACCCGCCGGCGGTATACGAGCCGTTGGGTCATTTCATCTTCTCAGCCCCACGAAATTCCGCTCCTGCACTGTGTATTGCCGCCTGCGAGCTCGTCGGCGGCCACCGGGACCAGGCCATGGCGGCAGCTATTGCACTCCAACTTATCCACGCGGCGGCGTACACTCACGAATACCCTCCACTGACGGCGCGTGCAATATCACGCGCCGCCGTTGTCGACCGTGTTTATGGCCGCAACATCCAGCTGCTGACTGGCGATGGAATAGCTCCGATTGTGTTCGAGATCCTAGCGGGATCTTGCGACTGGAGCGTGAGCGGGTCGGAGCGGGTTCGGCGTGTGATGGTGGAAATGGCACGGGCGATGGGGACGGAAGGGTGGATTGGGGGGCAATTTCGGGGATTGGAGGAGTCGGCAACGGCGGAGGAAGTGATCGAGAAGACGGAAGGTGGGCTACACGCGCGTGGGAGCGCGTGTGGGGCAATATTGGGAGGTGGAAGTGAAGAGGAAATAGAGAAAATGAGGAAATATGGGAAATTGGTGGGAATGGTAAAGGGAATGTCAAAAAATGTGTTTGGAGGGAAAGAAAATGAGAGAAAGAAAGAGAAAATTGATGAGTTGAAGGTTTTGGCTTTCAAGGAATTGGAAGATTTCAAAGGAGAAAAAGTTCATGAGATCTATGGATTTCTTGATTTTGAGGGACTTTAG

mRNA sequence

ATGGCGATCTCTCTCAATCTTCTTCAACTTCAAGCAAATCCAGCACTGCCCAAGTTCTTCAAATGGAACCCGGTCCGACCGGCGGTGTATTTCAGAGCTCCGACGAGGTCAACCATCGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCCATAAATGAAGATATTGAGGATCATCTCCGGCGGGTCATTCCGGCGAAGGACCCGCCGGCGGTATACGAGCCGTTGGGTCATTTCATCTTCTCAGCCCCACGAAATTCCGCTCCTGCACTGTGTATTGCCGCCTGCGAGCTCGTCGGCGGCCACCGGGACCAGGCCATGGCGGCAGCTATTGCACTCCAACTTATCCACGCGGCGGCGTACACTCACGAATACCCTCCACTGACGGCGCGTGCAATATCACGCGCCGCCGTTGTCGACCGTGTTTATGGCCGCAACATCCAGCTGCTGACTGGCGATGGAATAGCTCCGATTGTGTTCGAGATCCTAGCGGGATCTTGCGACTGGAGCGTGAGCGGGTCGGAGCGGGTTCGGCGTGTGATGGTGGAAATGGCACGGGCGATGGGGACGGAAGGGTGGATTGGGGGGCAATTTCGGGGATTGGAGGAGTCGGCAACGGCGGAGGAAGTGATCGAGAAGACGGAAGGTGGGCTACACGCGCGTGGGAGCGCGTGTGGGGCAATATTGGGAGGTGGAAGTGAAGAGGAAATAGAGAAAATGAGGAAATATGGGAAATTGGTGGGAATGGTAAAGGGAATGTCAAAAAATGTGTTTGGAGGGAAAGAAAATGAGAGAAAGAAAGAGAAAATTGATGAGTTGAAGGTTTTGGCTTTCAAGGAATTGGAAGATTTCAAAGGAGAAAAAGTTCATGAGATCTATGGATTTCTTGATTTTGAGGGACTTTAG

Coding sequence (CDS)

ATGGCGATCTCTCTCAATCTTCTTCAACTTCAAGCAAATCCAGCACTGCCCAAGTTCTTCAAATGGAACCCGGTCCGACCGGCGGTGTATTTCAGAGCTCCGACGAGGTCAACCATCGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCCATAAATGAAGATATTGAGGATCATCTCCGGCGGGTCATTCCGGCGAAGGACCCGCCGGCGGTATACGAGCCGTTGGGTCATTTCATCTTCTCAGCCCCACGAAATTCCGCTCCTGCACTGTGTATTGCCGCCTGCGAGCTCGTCGGCGGCCACCGGGACCAGGCCATGGCGGCAGCTATTGCACTCCAACTTATCCACGCGGCGGCGTACACTCACGAATACCCTCCACTGACGGCGCGTGCAATATCACGCGCCGCCGTTGTCGACCGTGTTTATGGCCGCAACATCCAGCTGCTGACTGGCGATGGAATAGCTCCGATTGTGTTCGAGATCCTAGCGGGATCTTGCGACTGGAGCGTGAGCGGGTCGGAGCGGGTTCGGCGTGTGATGGTGGAAATGGCACGGGCGATGGGGACGGAAGGGTGGATTGGGGGGCAATTTCGGGGATTGGAGGAGTCGGCAACGGCGGAGGAAGTGATCGAGAAGACGGAAGGTGGGCTACACGCGCGTGGGAGCGCGTGTGGGGCAATATTGGGAGGTGGAAGTGAAGAGGAAATAGAGAAAATGAGGAAATATGGGAAATTGGTGGGAATGGTAAAGGGAATGTCAAAAAATGTGTTTGGAGGGAAAGAAAATGAGAGAAAGAAAGAGAAAATTGATGAGTTGAAGGTTTTGGCTTTCAAGGAATTGGAAGATTTCAAAGGAGAAAAAGTTCATGAGATCTATGGATTTCTTGATTTTGAGGGACTTTAG

Protein sequence

MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAAYTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDFEGL

Homology

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BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot
Match: Q39108 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27
Identity = 80/268 (29.85%), Postives = 135/268 (50.37%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFS-APRNSAPALCIAACELVGGHRDQ 106
           +YW  +  +I   L   IP K P  +YE + + + +   + + P +C+AACEL GG R  
Sbjct: 49  TYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLA 108

Query: 107 AMAAAIALQLIHAAAYTH-EYPPLTARAISRAAVVDR-VYGRNIQLLTGDGIAPIVFEIL 166
           A   A AL+++HAA+  H + P +    + R    +  VYG  + +L GD + P+ F+ +
Sbjct: 109 AFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHI 168

Query: 167 AGSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQFRGLEESA-TAEEVIEKTEGGLHARG 226
                  +     + R++ E+AR +G+ G   GQ+  LE        V EK  G +    
Sbjct: 169 VSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECS 228

Query: 227 SACGAILGGGSEEEIEKMRKYGKLVGMVKGM-------SKNVFGGKENERKKEKIDELKV 286
           + CG +LGG +E+E++ +R+YG+ VGM+  +        K  + G   +   E  +ELK 
Sbjct: 229 AVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKE 288

Query: 287 LAFKELEDFK-----GEKVHEIYGFLDF 299
            A KEL+ F      G+ +  +Y F+D+
Sbjct: 289 KAKKELQVFDNKYGGGDTLVPLYTFVDY 316

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BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-25
Identity = 73/214 (34.11%), Postives = 119/214 (55.61%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY       I   L   IP ++P  ++E + + + +  +   PALC+AACELVGG+   A
Sbjct: 81  SYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMA 140

Query: 107 MAAAIALQLIHAAAYTH-EYPPLTARAISRAAVVDR-VYGRNIQLLTGDGIAPIVFEILA 166
           M AA A+++IH  +  H + P +    + R    +  V+G ++ +L GD +    FE +A
Sbjct: 141 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIA 200

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSA 226
            S   +VS S R+ R + E+A+A+G EG + GQ   +    ++E  +EK E  +H   +A
Sbjct: 201 VS-TLNVS-SARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLE-FIHIHKTA 260

Query: 227 --------CGAILGGGSEEEIEKMRKYGKLVGMV 251
                    GAILGGG++EE+EK+RKY + +G++
Sbjct: 261 KLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291

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BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-24
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY     E +   L   +P ++P  ++E + + + +  +   P LCIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAAIALQLIHAAAYTH-EYPPLTARAISRAAVVD-RVYGRNIQLLTGDGIAPIVFEILA 166
           M AA A+++IH  +  H + P +    + R    + +V+G ++ +L GD +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQF-----RGLEESATAEEVIE-----KT 226
            +    V    RV R + E+A+A+GTEG + GQ       GL+ +    E +E     KT
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 EGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMV 251
              L A  +  GAI+GGGS++EIE++RK+ + +G++
Sbjct: 258 AALLEA-SAVLGAIVGGGSDDEIERLRKFARCIGLL 292

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BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot
Match: Q9LHR4 (Geranylgeranyl pyrophosphate synthase 12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g32040 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-23
Identity = 80/245 (32.65%), Postives = 129/245 (52.65%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY     E +   L   +P +DP A+ E + + + +  +   P LCIAACELVGG    A
Sbjct: 68  SYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATA 127

Query: 107 MAAAIALQLIHAAAYTHEYPPLTARAISRAA--VVDRVYGRNIQLLTGDGIAPIVFEILA 166
           M+AA A+++IH ++  H+  P    A  R       +V+G ++ +L GD +  + FE + 
Sbjct: 128 MSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAFEHMT 187

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQF-----RGLEESATAEEVIE-----KT 226
                 V+  ER+ R + E+A+A+GT+G + GQ      +GL       E +E     KT
Sbjct: 188 VVSSGLVA-PERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKT 247

Query: 227 EGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELK 280
              L A  +  GAI+GGG+EEEI+K+RKYG+ +G++  +  ++    E+  +  K     
Sbjct: 248 AALLEA-AAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKD 307

[Close]

BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot
Match: Q9LRR0 (Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g14510 PE=5 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 3.3e-23
Identity = 84/263 (31.94%), Postives = 133/263 (50.57%), Query Frame = 0


Query: 63  VIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAAYT 122
           ++P ++P  V E + + + +  +   P LCIA CELVGG    AM+AA A+++IH ++  
Sbjct: 85  IVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLI 144

Query: 123 HEYPPLTARAISRAA--VVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 182
           H+  P    A  R       +V+G ++ +L GD +  + FE +       V+ SER+ R 
Sbjct: 145 HDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTVVSSGLVA-SERMIRA 204

Query: 183 MVEMARAMGTEGWIGGQFRGL-EESATAEEV---------IEKTEGGLHARGSACGAILG 242
           +VE+ARA+GT+G + GQ   L  E     +V         + KT   L A  +  GAI+G
Sbjct: 205 VVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEA-AAVIGAIMG 264

Query: 243 GGSEEEIEKMRKYGKLVGMV------------------KGMSKNVFGGKEN-------ER 289
           GG+EEEIEK+RKY + +G++                  K   K+V  GK         ER
Sbjct: 265 GGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLER 324

[Close]

BLAST of Lsi02G018990 vs. ExPASy TrEMBL
Match: A0A5A7SLD5 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29549G00010 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.4e-132
Identity = 247/301 (82.06%), Postives = 265/301 (88.04%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQ N A PKFF+ N V PA Y R P RST+ MSQITPSYWAAINEDIEDHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVIP KDP AVYEPLGHFI SAPRNSA ALCIAACELVGGHRDQAMAAA A+QLIHAA 
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
            THEYPPLTA   +RAAVV+RVY  +IQL+TGDGIAP+ FEILA SCDWS  GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYRPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVE++RAMGTEGWIGGQFRGL+E AT EEVIEK EGGLHA G ACGAI+GGG+EEEIEKM
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDEEATVEEVIEKREGGLHACGGACGAIMGGGNEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDFEG 300
           RKYGKLVGMVKG++KNVFGGKENE+K+EKI+ELKVLAFKELE F GE VHEIYGFLDF G
Sbjct: 241 RKYGKLVGMVKGLTKNVFGGKENEKKREKIEELKVLAFKELEGFNGEMVHEIYGFLDFVG 300

Query: 301 L 302
           L
Sbjct: 301 L 300

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BLAST of Lsi02G018990 vs. ExPASy TrEMBL
Match: A0A0A0K8P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.9e-131
Identity = 244/298 (81.88%), Postives = 262/298 (87.92%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQ N A PKFF+ N + P  Y R P RS  VMSQITPSYWAAINEDIEDHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVIP KDP AVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAA A+QLI+AA 
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
            THEYPPLTAR   RA+VVDRVYG N+QL+TGDGI P+ FEILA SCDWS  GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVE+ARAMGTEGWIGGQFRGLEE AT EEVIEKTEGGLHA G ACGAI+GGG+EEEIEKM
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEEEATVEEVIEKTEGGLHACGGACGAIMGGGNEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDF 299
           RKYGKLVG+VKG+++ VFGGKENERK+EKI+ELKVLAFKELE F GE V +IYGFLDF
Sbjct: 241 RKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLDF 297

[Close]

BLAST of Lsi02G018990 vs. ExPASy TrEMBL
Match: A0A6J1IK44 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111475905 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.7e-129
Identity = 244/304 (80.26%), Postives = 264/304 (86.84%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQL  NP+LPKF   N +RPAVYFRAP R+T+VMSQITPSYWAAINEDIE+HL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPMRATVVMSQITPSYWAAINEDIEEHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RR+I AKDPP VYEPLGHF+FSAPRNSA A+CIAACE VGGHRDQAMAAA ALQLI+AA 
Sbjct: 61  RRIIIAKDPPVVYEPLGHFVFSAPRNSAAAMCIAACEFVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
           YT EYPPLTAR  S AA+VDRVY  NIQLLTG GIAPI FEILAGSCD S SGS+RVRRV
Sbjct: 121 YTREYPPLTARGSSNAAMVDRVYAPNIQLLTGVGIAPIGFEILAGSCDLSESGSDRVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEE---SATAEEVIEKTEGGLHARGSACGAILGGGSEEEI 240
           M EMARAMG+EGWIGGQF+ LEE   +A AEEVIEKTEG LHARG ACGAILG GSEEEI
Sbjct: 181 MGEMARAMGSEGWIGGQFKELEEVTAAAEAEEVIEKTEGELHARGGACGAILGSGSEEEI 240

Query: 241 EKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLD 300
           EKMRKYG++VGMVKG+SK VFGGKENERK+EKI ELK LAFKELE FKGEKV ++  F D
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 302
           FEGL
Sbjct: 301 FEGL 304

[Close]

BLAST of Lsi02G018990 vs. ExPASy TrEMBL
Match: A0A1S4DWU7 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107990910 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.2e-105
Identity = 205/268 (76.49%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQ N A PKFF+ N V PA Y R P RST+ MSQITPSYWAAINEDIEDHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVIP KDP AVYEPLGHFI SAPRNSA ALCIAACELVGGHRDQAMAAA A+QLIHAA 
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
            THEYPPLTA   +RAAVV+RVY  +IQL+TGDGIAP+ FEILA SCDWS  GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYKPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVE++RAMGTEGWIGGQFRGL+E AT EEVIEK EGGLHA G ACGAI+GGG+EEEIEKM
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDEEATVEEVIEKREGGLHACGGACGAIMGGGNEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKE 269
           RKYGKL+       +  +  +  ER+KE
Sbjct: 241 RKYGKLI------EERRWRNRRQERRKE 261

[Close]

BLAST of Lsi02G018990 vs. ExPASy TrEMBL
Match: A0A2N9F8D7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 145/300 (48.33%), Postives = 202/300 (67.33%), Query Frame = 0


Query: 9   QLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHLRRVIPAKD 68
           +L  N       + + VRP++    P RS ++      SYWA++N +IE HL++ IP + 
Sbjct: 7   RLNGNQTFHILSRSSAVRPSL----PHRSMMITMSQNQSYWASVNSEIEAHLKQAIPLRP 66

Query: 69  PPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAAYTHEYPPL 128
           P  V+EP+ H +F+AP+N+APALC+AACELVGGHRDQAMAAA AL L+HAA++THE+ PL
Sbjct: 67  PLQVFEPMHHLVFAAPQNTAPALCLAACELVGGHRDQAMAAASALHLMHAASFTHEHLPL 126

Query: 129 TARAISRA-AVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRVMVEMARA 188
           T R   ++  V+   YG NI+LL GD I P  FE+LA S D + + S+R+ RV +E+ RA
Sbjct: 127 TDRPRPKSRPVIHHAYGPNIELLLGDAIIPFGFELLARSDDPAQNNSDRILRVTIEITRA 186

Query: 189 MGTEGWIGGQFRGLE----------ESATAEEVIEKTEGGLHARGSACGAILGGGSEEEI 248
           MG++G + GQ+  LE          +    E+V +K EGGLHA G+ACGAILGGGSEEEI
Sbjct: 187 MGSQGMVEGQYYELECPQSDGEELCDVGWIEQVCKKKEGGLHACGAACGAILGGGSEEEI 246

Query: 249 EKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLD 298
           EK+R++G  VGM++GM      G++ +  KE ++EL+ LA KELE+FKG KV  I  F++
Sbjct: 247 EKLRRFGLYVGMIQGMLHG--AGRKEKGLKEVVEELRNLALKELEEFKGRKVEAISSFVN 300

[Close]

BLAST of Lsi02G018990 vs. NCBI nr
Match: XP_038896497.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 540.8 bits (1392), Expect = 7.4e-150
Identity = 271/301 (90.03%), Postives = 281/301 (93.36%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQANPA PKF KWNPVRPAVYFRAP RST+VMSQITPSYWA INEDIEDHL
Sbjct: 1   MAISLNLLQLQANPARPKFLKWNPVRPAVYFRAPARSTVVMSQITPSYWATINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           R+VIPAKDPPAV+EPLGHFIFSAPRNSAPALCIAACELVGG RD+AMAAA ALQLIHAA 
Sbjct: 61  RQVIPAKDPPAVFEPLGHFIFSAPRNSAPALCIAACELVGGRRDKAMAAATALQLIHAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
           YT EYPPLTAR ISRAAVVDR+YG NIQLLTGD IAPIVFEILAGSCDWS SGSERV+ V
Sbjct: 121 YTREYPPLTAREISRAAVVDRIYGANIQLLTGDAIAPIVFEILAGSCDWSESGSERVQHV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVEMARAMGTEGW+GGQFRGLEE ATAEEV EKTEGGLHA G ACGAILGGGSEEEIEKM
Sbjct: 181 MVEMARAMGTEGWVGGQFRGLEEEATAEEVSEKTEGGLHACGGACGAILGGGSEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDFEG 300
           RKYGKLVGMVKG+SKNVFGGKENERK+EKI+E KVLAFK LE FKGEKVHEIYGFLDFEG
Sbjct: 241 RKYGKLVGMVKGLSKNVFGGKENERKREKIEEFKVLAFKVLEGFKGEKVHEIYGFLDFEG 300

Query: 301 L 302
           L
Sbjct: 301 L 301

[Close]

BLAST of Lsi02G018990 vs. NCBI nr
Match: XP_023536167.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 487.3 bits (1253), Expect = 9.8e-134
Identity = 250/301 (83.06%), Postives = 267/301 (88.70%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQL  NP+LPKF   N +RPAVYFRAP R+T+VMSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVI AKDPPAVYEPLGHF+FSAPRNSA A+CIAACELVGGHRDQAMAAA ALQLI+AA 
Sbjct: 61  RRVIIAKDPPAVYEPLGHFVFSAPRNSAAAMCIAACELVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
           YT EYPPLTAR IS AAVVDRVYG NIQLLTG GIAPI FEILAGSCD S SGSERVRRV
Sbjct: 121 YTREYPPLTARGISNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVEMARAMG+EGWIGGQF+ LEE   AEEVIE TEG LHARG ACGAILGGGSEEEIEKM
Sbjct: 181 MVEMARAMGSEGWIGGQFKELEEVTAAEEVIEMTEGELHARGGACGAILGGGSEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDFEG 300
           RKYG++VGMVKG+SK VFGGKENERK+EKI ELK LAFKELE FKG+KV ++  F DFEG
Sbjct: 241 RKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGQKVDQMCNFFDFEG 300

Query: 301 L 302
           L
Sbjct: 301 L 301

[Close]

BLAST of Lsi02G018990 vs. NCBI nr
Match: KAA0031902.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 480.7 bits (1236), Expect = 9.1e-132
Identity = 247/301 (82.06%), Postives = 265/301 (88.04%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQ N A PKFF+ N V PA Y R P RST+ MSQITPSYWAAINEDIEDHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVIP KDP AVYEPLGHFI SAPRNSA ALCIAACELVGGHRDQAMAAA A+QLIHAA 
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
            THEYPPLTA   +RAAVV+RVY  +IQL+TGDGIAP+ FEILA SCDWS  GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYRPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVE++RAMGTEGWIGGQFRGL+E AT EEVIEK EGGLHA G ACGAI+GGG+EEEIEKM
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDEEATVEEVIEKREGGLHACGGACGAIMGGGNEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDFEG 300
           RKYGKLVGMVKG++KNVFGGKENE+K+EKI+ELKVLAFKELE F GE VHEIYGFLDF G
Sbjct: 241 RKYGKLVGMVKGLTKNVFGGKENEKKREKIEELKVLAFKELEGFNGEMVHEIYGFLDFVG 300

Query: 301 L 302
           L
Sbjct: 301 L 300

[Close]

BLAST of Lsi02G018990 vs. NCBI nr
Match: XP_004139865.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucumis sativus] >KGN44166.1 hypothetical protein Csa_016347 [Cucumis sativus])

HSP 1 Score: 477.2 bits (1227), Expect = 1.0e-130
Identity = 244/298 (81.88%), Postives = 262/298 (87.92%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQLQ N A PKFF+ N + P  Y R P RS  VMSQITPSYWAAINEDIEDHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RRVIP KDP AVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAA A+QLI+AA 
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
            THEYPPLTAR   RA+VVDRVYG N+QL+TGDGI P+ FEILA SCDWS  GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEESATAEEVIEKTEGGLHARGSACGAILGGGSEEEIEKM 240
           MVE+ARAMGTEGWIGGQFRGLEE AT EEVIEKTEGGLHA G ACGAI+GGG+EEEIEKM
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEEEATVEEVIEKTEGGLHACGGACGAIMGGGNEEEIEKM 240

Query: 241 RKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLDF 299
           RKYGKLVG+VKG+++ VFGGKENERK+EKI+ELKVLAFKELE F GE V +IYGFLDF
Sbjct: 241 RKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLDF 297

[Close]

BLAST of Lsi02G018990 vs. NCBI nr
Match: XP_022975728.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 471.5 bits (1212), Expect = 5.5e-129
Identity = 244/304 (80.26%), Postives = 264/304 (86.84%), Query Frame = 0


Query: 1   MAISLNLLQLQANPALPKFFKWNPVRPAVYFRAPTRSTIVMSQITPSYWAAINEDIEDHL 60
           MAISLNLLQL  NP+LPKF   N +RPAVYFRAP R+T+VMSQITPSYWAAINEDIE+HL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPMRATVVMSQITPSYWAAINEDIEEHL 60

Query: 61  RRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAA 120
           RR+I AKDPP VYEPLGHF+FSAPRNSA A+CIAACE VGGHRDQAMAAA ALQLI+AA 
Sbjct: 61  RRIIIAKDPPVVYEPLGHFVFSAPRNSAAAMCIAACEFVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTHEYPPLTARAISRAAVVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRRV 180
           YT EYPPLTAR  S AA+VDRVY  NIQLLTG GIAPI FEILAGSCD S SGS+RVRRV
Sbjct: 121 YTREYPPLTARGSSNAAMVDRVYAPNIQLLTGVGIAPIGFEILAGSCDLSESGSDRVRRV 180

Query: 181 MVEMARAMGTEGWIGGQFRGLEE---SATAEEVIEKTEGGLHARGSACGAILGGGSEEEI 240
           M EMARAMG+EGWIGGQF+ LEE   +A AEEVIEKTEG LHARG ACGAILG GSEEEI
Sbjct: 181 MGEMARAMGSEGWIGGQFKELEEVTAAAEAEEVIEKTEGELHARGGACGAILGSGSEEEI 240

Query: 241 EKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELKVLAFKELEDFKGEKVHEIYGFLD 300
           EKMRKYG++VGMVKG+SK VFGGKENERK+EKI ELK LAFKELE FKGEKV ++  F D
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 302
           FEGL
Sbjct: 301 FEGL 304

[Close]

BLAST of Lsi02G018990 vs. TAIR 10
Match: AT4G38460.1 (geranylgeranyl reductase )

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-28
Identity = 80/268 (29.85%), Postives = 135/268 (50.37%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFS-APRNSAPALCIAACELVGGHRDQ 106
           +YW  +  +I   L   IP K P  +YE + + + +   + + P +C+AACEL GG R  
Sbjct: 49  TYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLA 108

Query: 107 AMAAAIALQLIHAAAYTH-EYPPLTARAISRAAVVDR-VYGRNIQLLTGDGIAPIVFEIL 166
           A   A AL+++HAA+  H + P +    + R    +  VYG  + +L GD + P+ F+ +
Sbjct: 109 AFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHI 168

Query: 167 AGSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQFRGLEESA-TAEEVIEKTEGGLHARG 226
                  +     + R++ E+AR +G+ G   GQ+  LE        V EK  G +    
Sbjct: 169 VSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECS 228

Query: 227 SACGAILGGGSEEEIEKMRKYGKLVGMVKGM-------SKNVFGGKENERKKEKIDELKV 286
           + CG +LGG +E+E++ +R+YG+ VGM+  +        K  + G   +   E  +ELK 
Sbjct: 229 AVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKE 288

Query: 287 LAFKELEDFK-----GEKVHEIYGFLDF 299
            A KEL+ F      G+ +  +Y F+D+
Sbjct: 289 KAKKELQVFDNKYGGGDTLVPLYTFVDY 316

[Close]

BLAST of Lsi02G018990 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-25
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY     E +   L   +P ++P  ++E + + + +  +   P LCIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAAIALQLIHAAAYTH-EYPPLTARAISRAAVVD-RVYGRNIQLLTGDGIAPIVFEILA 166
           M AA A+++IH  +  H + P +    + R    + +V+G ++ +L GD +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQF-----RGLEESATAEEVIE-----KT 226
            +    V    RV R + E+A+A+GTEG + GQ       GL+ +    E +E     KT
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 EGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMV 251
              L A  +  GAI+GGGS++EIE++RK+ + +G++
Sbjct: 258 AALLEA-SAVLGAIVGGGSDDEIERLRKFARCIGLL 292

[Close]

BLAST of Lsi02G018990 vs. TAIR 10
Match: AT3G32040.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-24
Identity = 80/245 (32.65%), Postives = 129/245 (52.65%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY     E +   L   +P +DP A+ E + + + +  +   P LCIAACELVGG    A
Sbjct: 68  SYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATA 127

Query: 107 MAAAIALQLIHAAAYTHEYPPLTARAISRAA--VVDRVYGRNIQLLTGDGIAPIVFEILA 166
           M+AA A+++IH ++  H+  P    A  R       +V+G ++ +L GD +  + FE + 
Sbjct: 128 MSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAFEHMT 187

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQF-----RGLEESATAEEVIE-----KT 226
                 V+  ER+ R + E+A+A+GT+G + GQ      +GL       E +E     KT
Sbjct: 188 VVSSGLVA-PERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKT 247

Query: 227 EGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMVKGMSKNVFGGKENERKKEKIDELK 280
              L A  +  GAI+GGG+EEEI+K+RKYG+ +G++  +  ++    E+  +  K     
Sbjct: 248 AALLEA-AAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKD 307

[Close]

BLAST of Lsi02G018990 vs. TAIR 10
Match: AT3G14510.1 (Polyprenyl synthetase family protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.8e-24
Identity = 85/264 (32.20%), Postives = 133/264 (50.38%), Query Frame = 0


Query: 62  RVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAAIALQLIHAAAY 121
           R +P ++P  V E + + + +  +   P LCIA CELVGG    AM+AA A+++IH ++ 
Sbjct: 7   RSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSL 66

Query: 122 THEYPPLTARAISRAA--VVDRVYGRNIQLLTGDGIAPIVFEILAGSCDWSVSGSERVRR 181
            H+  P    A  R       +V+G ++ +L GD +  + FE +       V+ SER+ R
Sbjct: 67  IHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTVVSSGLVA-SERMIR 126

Query: 182 VMVEMARAMGTEGWIGGQFRGL-EESATAEEV---------IEKTEGGLHARGSACGAIL 241
            +VE+ARA+GT+G + GQ   L  E     +V         + KT   L A  +  GAI+
Sbjct: 127 AVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEA-AAVIGAIM 186

Query: 242 GGGSEEEIEKMRKYGKLVGMV------------------KGMSKNVFGGKEN-------E 289
           GGG+EEEIEK+RKY + +G++                  K   K+V  GK         E
Sbjct: 187 GGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLE 246

[Close]

BLAST of Lsi02G018990 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 8.8e-24
Identity = 85/279 (30.47%), Postives = 138/279 (49.46%), Query Frame = 0


Query: 47  SYWAAINEDIEDHLRRVIPAKDPPAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQA 106
           SY     E +   L   +P ++P  + E + + + +  +   P LCIAACELVGG    A
Sbjct: 65  SYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATA 124

Query: 107 MAAAIALQLIHAAAYTHEYPPLTARAISRAA--VVDRVYGRNIQLLTGDGIAPIVFEILA 166
           M+AA A+++IH ++  H+  P    A  R       + +G ++ +L GD +  + FE + 
Sbjct: 125 MSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAFEHMT 184

Query: 167 GSCDWSVSGSERVRRVMVEMARAMGTEGWIGGQF-----RGLEESATAEEVIE-----KT 226
              +  V+  ER+ R ++E+A+A+GT+G + GQ      +GL       E +E     KT
Sbjct: 185 FVSNGLVA-PERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKT 244

Query: 227 EGGLHARGSACGAILGGGSEEEIEKMRKYGKLVGMV------------------KGMSKN 286
              L A  +  GAI+GGG+EEEIEK+RKY + +G++                  K   K+
Sbjct: 245 AALLEA-AAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKD 304

Query: 287 VFGGKEN-------ERKKEKIDELKVLAFKELEDFKGEK 289
           V  GK         ER +E  ++L+  A ++L  F  +K
Sbjct: 305 VMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSDK 341

The following BLAST results are available for this feature:

BLAST of Lsi02G018990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39108	1.7e-27	29.85	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
Q94ID7	3.5e-25	34.11	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
P34802	2.9e-24	33.33	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]
Q9LHR4	1.5e-23	32.65	Geranylgeranyl pyrophosphate synthase 12, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9LRR0	3.3e-23	31.94	Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Lsi02G018990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLD5	4.4e-132	82.06	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis mel...	[more]
A0A0A0K8P9	4.9e-131	81.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1	[more]
A0A6J1IK44	2.7e-129	80.26	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A1S4DWU7	1.2e-105	76.49	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A2N9F8D7	1.0e-67	48.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1	[more]

BLAST of Lsi02G018990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896497.1	7.4e-150	90.03	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_023536167.1	9.8e-134	83.06	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
KAA0031902.1	9.1e-132	82.06	heterodimeric geranylgeranyl pyrophosphate synthase small subunit [Cucumis melo ...	[more]
XP_004139865.1	1.0e-130	81.88	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_022975728.1	5.5e-129	80.26	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of Lsi02G018990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38460.1	1.2e-28	29.85	geranylgeranyl reductase	[more]
AT4G36810.1	2.1e-25	33.33	geranylgeranyl pyrophosphate synthase 1	[more]
AT3G32040.1	1.0e-24	32.65	Terpenoid synthases superfamily protein	[more]
AT3G14510.1	1.8e-24	32.20	Polyprenyl synthetase family protein	[more]
AT3G29430.1	8.8e-24	30.47	Terpenoid synthases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 41..299 e-value: 7.5E-46 score: 158.4
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 47..250
None	No IPR available	PANTHER	PTHR43281:SF6	HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC-LIKE	coord: 9..297
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 9..297

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G018990.1	Lsi02G018990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004659	prenyltransferase activity