Lsi02G018510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G018510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PI-PLC Y-box domain-containing protein
Location	chr02: 24270165 .. 24270539 (+)
RNA-Seq Expression	Lsi02G018510
Synteny	Lsi02G018510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATACAGCAGTGTGTTCTGAGCAAACTGGCTTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAATCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

mRNA sequence

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATACAGCAGTGTGTTCTGAGCAAACTGGCTTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAATCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Coding sequence (CDS)

ATGAGTAGTGAAAACTGTAATGCCAGAGCAATGAACTCCTCCATCGCCTTGCTGCAGGAAAGATTTAGACAATTGCAGAAAGCTAAGGAGTTGAGAGAGCAGAAAGAATTTCGAAGGCTGTCGTCTGAGTCGATACAGGCCAATACAGCAGTGTGTTCTGAGCAAACTGGCTTATATTTCCATTCTGAACTAGTTCTTCCACCTAGGTCACCACTCCAAGGCTCTTCATACCTTCAGCCAATCTTGGAAAGCAGAAAATCTCATCTTCAAGTCACAGATAATCTTACTTTATCAGACATGGGGTCAAGAGAAACAGTCATGCACAGAACAAACTGTGTTGATGATTCAAATATTGACACCTCTCTTCATCTGTGA

Protein sequence

MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYFHSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDTSLHL

Homology

[Close]

BLAST of Lsi02G018510 vs. ExPASy TrEMBL
Match: A0A0A0LBC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.6e-58
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRR+SSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQP+LESRKSHLQVTDNLTLSD+GSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. ExPASy TrEMBL
Match: A0A5D3CC18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00160 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.1e-56
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           MS ENCNARAMNSSIALLQERFRQLQKAKELREQKE RR+SSESIQ NTAVCSEQTGLYF
Sbjct: 1   MSRENCNARAMNSSIALLQERFRQLQKAKELREQKEIRRMSSESIQPNTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQG SYLQP+LESRKSHLQVTDNLTLSDMGSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGPSYLQPVLESRKSHLQVTDNLTLSDMGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. ExPASy TrEMBL
Match: B9T468 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  RL SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+ TVMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. ExPASy TrEMBL
Match: A0A067L442 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01002 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.0e-23
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           M  +NC+   ++SSIALLQERFRQL+KAKE+R+Q+E  RL SE+ Q  +A   E +  +F
Sbjct: 1   MGRQNCDPTVIHSSIALLQERFRQLEKAKEMRQQRELLRLFSEAEQVQSAKDYEPSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL L P  PLQGS Y+QP +E++ + L V +   L ++ S+ TVMH  N  D+S++DT
Sbjct: 61  HSELTLSPGQPLQGSLYVQPNMENKYTDLPVNETPNLVNLWSKNTVMHNINNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. ExPASy TrEMBL
Match: A0A7J7C3F3 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G00602 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 2   SSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYFH 61
           SS+ C++  ++SSIALLQERFR+L+KAKE+R+ +E  RL SE  Q N     EQ   +FH
Sbjct: 3   SSKGCDSTFVHSSIALLQERFRRLEKAKEMRQHRELLRLISEEEQINPITVCEQPKRFFH 62

Query: 62  SELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDTS 121
           SEL+LPPR PLQG    QP  +++    Q T+   L+D+     V H T+  DDS++DTS
Sbjct: 63  SELILPPRPPLQGHPDFQPERQNKHIDPQATETPNLTDLWHENKVAHGTHNFDDSDVDTS 122

Query: 122 LHL 125
           LHL
Sbjct: 123 LHL 125

[Close]

BLAST of Lsi02G018510 vs. NCBI nr
Match: KAE8645981.1 (hypothetical protein Csa_015491 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRR+SSESIQANTAVCSEQTGLYF
Sbjct: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRMSSESIQANTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQGSSYLQP+LESRKSHLQVTDNLTLSD+GSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGSSYLQPVLESRKSHLQVTDNLTLSDVGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. NCBI nr
Match: KAA0048723.1 (hypothetical protein E6C27_scaffold43G00160 [Cucumis melo var. makuwa] >TYK07906.1 hypothetical protein E5676_scaffold265G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           MS ENCNARAMNSSIALLQERFRQLQKAKELREQKE RR+SSESIQ NTAVCSEQTGLYF
Sbjct: 1   MSRENCNARAMNSSIALLQERFRQLQKAKELREQKEIRRMSSESIQPNTAVCSEQTGLYF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPPRSPLQG SYLQP+LESRKSHLQVTDNLTLSDMGSRE VMHRTNCVDDSNIDT
Sbjct: 61  HSELVLPPRSPLQGPSYLQPVLESRKSHLQVTDNLTLSDMGSREKVMHRTNCVDDSNIDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. NCBI nr
Match: KAG6607761.1 (hypothetical protein SDJN03_01103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 101/124 (81.45%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           MSSE      MNSSIALLQERFRQLQKAKELRE+KE + LSSESI+AN+A  SEQTGL+F
Sbjct: 1   MSSE------MNSSIALLQERFRQLQKAKELRERKEVQNLSSESIRANSAAWSEQTGLFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLPP+SP QGSSYLQP LESRKSHLQ+TD+L+LSDMGSRETVM+RTNCVDD NIDT
Sbjct: 61  HSELVLPPKSPFQGSSYLQPSLESRKSHLQITDDLSLSDMGSRETVMNRTNCVDDLNIDT 118

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 118

[Close]

BLAST of Lsi02G018510 vs. NCBI nr
Match: KAF3950464.1 (hypothetical protein CMV_023789 [Castanea mollissima])

HSP 1 Score: 120.6 bits (301), Expect = 9.9e-24
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           M  ++C+A  ++SSIALLQERFRQLQ+AKE+RE +E  RLSSE  + N A   + T L+F
Sbjct: 1   MGRQSCDATVIHSSIALLQERFRQLQRAKEMREARELLRLSSEPERVNPATLYDPTRLFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSEL+ PPR   QGS YLQP  +S+ + +QV D      +GS +TV  R N  DDS++DT
Sbjct: 61  HSELIYPPRPLPQGSLYLQPNFQSKHTDIQVKDTPFFGSLGSIDTVTDRKNDFDDSDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

[Close]

BLAST of Lsi02G018510 vs. NCBI nr
Match: XP_025015545.1 (uncharacterized protein LOC112536879 [Ricinus communis] >EEF29345.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MSSENCNARAMNSSIALLQERFRQLQKAKELREQKEFRRLSSESIQANTAVCSEQTGLYF 60
           M  +NC+  +++SSIALLQERFRQL++AKE+R+Q+E  RL SE+ Q       EQ+  +F
Sbjct: 1   MGRQNCDPTSIHSSIALLQERFRQLERAKEMRQQRELLRLFSEAEQVKPPKAFEQSRPFF 60

Query: 61  HSELVLPPRSPLQGSSYLQPILESRKSHLQVTDNLTLSDMGSRETVMHRTNCVDDSNIDT 120
           HSELVLP   PLQ S YLQP +++R + LQ+ +     D+ S+ TVMH TN  D+S++DT
Sbjct: 61  HSELVLPLGQPLQDSLYLQPNMQNRHAELQINETPNSVDLWSKNTVMHITNNFDESDVDT 120

Query: 121 SLHL 125
           SLHL
Sbjct: 121 SLHL 124

The following BLAST results are available for this feature:

BLAST of Lsi02G018510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G018510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC7	8.6e-58	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769680 PE=4 SV=1	[more]
A0A5D3CC18	8.1e-56	94.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
B9T468	1.4e-23	51.61	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0423940 PE=4 SV=1	[more]
A0A067L442	9.0e-23	50.81	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01002 PE=4 SV=1	[more]
A0A7J7C3F3	1.9e-20	48.78	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G00602 ...	[more]

BLAST of Lsi02G018510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645981.1	1.8e-57	96.77	hypothetical protein Csa_015491 [Cucumis sativus]	[more]
KAA0048723.1	1.7e-55	94.35	hypothetical protein E6C27_scaffold43G00160 [Cucumis melo var. makuwa] >TYK07906...	[more]
KAG6607761.1	1.5e-43	81.45	hypothetical protein SDJN03_01103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3950464.1	9.9e-24	53.23	hypothetical protein CMV_023789 [Castanea mollissima]	[more]
XP_025015545.1	2.9e-23	51.61	uncharacterized protein LOC112536879 [Ricinus communis] >EEF29345.1 conserved hy...	[more]

BLAST of Lsi02G018510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	PANTHER	PTHR34570:SF2	OS03G0593100 PROTEIN	coord: 1..124
None	No IPR available	PANTHER	PTHR34570	OS03G0593100 PROTEIN	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G018510.1	Lsi02G018510.1	mRNA