Lsi02G018140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G018140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	chr02: 23927549 .. 23931279 (-)
RNA-Seq Expression	Lsi02G018140
Synteny	Lsi02G018140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCCTTCCTCTCTTCCAATTGGGAATTTTCCTAAAAACCCTAAATCAACGATCTTTCTTCTTCGTCTCCACCGTTCTATCGATCTTCTTCGGCAACGGAAGAAAAGTTCATCCGCTAGTCATATTTTCGATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGTTTGTGTCATTGCCTTTCTCAAGTTGTTTTTCTTTCCGTCTTTCTCTGAGAAAGTTTCGAATTGGGGTTTTTAAGCACCATATTTTAATTACTATATGCCTTCCCTCTTTAGGCCTGCCAAATGGTGCCTTTGTCTCGATTTTCCTTAGATCTTGATTTTGTGTTCTCACTTTTGTTGTTATTTTTGTTTTCCCAGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAGTGAGTTTTTGTTCTTAGGGTTCGAGTTTCTGTAGCTATGTTTAATTCTGCTGAAAATAGCTGTTTTCCGTGATGGGTATTCTTTATTGTATGGATAGTTTAGGACCTTTTCTATTGTGCTTTTGTTTATACTTCAACTAGATCTGTTGAAGAGCATCGAAAATTAAATGGCTTATTGATTTGCTGAATATGTGAATTGATTAAGTGCAATGTTAGCTTAGATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTATCGAAGATACACACGTCATTAATGGGAAACAAGTGCGTGATCTTATTTATTTTGTTTTTCTGACCGACTTATGGAACACTTTATTCTATTGGATTATTAAATGGCGTTACTTTTTGGTCTCCCATGGTTTTATGATGTTAATTATGAGTATTTTTTAGAATTCTATTGGATGGTCAATATTTTTTCTTTGGTACCCCCTCTTTTTTCATGGTACAGTTGTAACATGATCTGCTGTTGCATGAATTTAAGCTTTATTTATTTTCATTTCATATTCCCTCGACTTACTTTGCTAAATGGAATTAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGGTAGGGTTATTGAGCTATCTGTTGCAGCATTTTTTTAAGAATTGGTGGTACCTATAATTGTTTCAGCCACTGTTTATTTGTTCTTCTCATATGGCTGTAGTTTCTGTGTTATGTGTTTTATTCTGTTTGTTAAAACATGTCTTGCTTGTAGATGAGTGTACACATTTCTTTTGTTGTAGTTTATATGTTTGTCTAATCTGTCTACTACATTTCTTGCTTGTAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAATGGACTGCAAGTGAGCAAAGTGTAAACAGAATTCTGTTTCCAAGGGATTTTGCACCATTCTATTACCTGGTTTTAATAATAATGGACTATTTCAACCTTTTCACTCTATGCGAATGTATCTTTTAAGCATTATGCCATTAGTTACTTCTTTTTGCTACTAATTTTAGGTGGAGGTTATTACAGGTATAGATCTTCTAAGGGAAGGGCTATCAGAATAGATAAATTGCAGAAGATTTAGGTTGACTAAGTTACTTTGTTGTAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAGAATCATTGCATAGTCCGTACCATCCATCCCCTTGCAAGCTAGAAAAGAAGTCTTTCTCCATTGCTGTCTTGCTAAGATTTGCCATAGAGTCTTCAAACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCGCTTCTCACAAATACTAGAGGTCCCAAGGAAGCTTTTGAAAGATCTGAAGAGTGTATTAGACATTTTATTGTATGGTTTTAGATACTATTATGTAGACTACTGCCAGCTAGTTTGTGCCTATATATGGTTGTCCTGATCTAGTACAATTTCAATGTAGTGTGATATGGTGTAGGCTTTAGCATATACTTTTTTTTGGTTGTGTTTATTCCTCACATTAGTTTGATATCTAGATAGATTTATTATGTCCTATAAATATGCCCTAGTCTTCTGCTCTTATTTTAGTTTGTTGATGATAGATTGCTTGTAGAAAAAAAAAACAAATTTCCCAGTTCATACTGTTTTAAAATCAGACAGAGGATTGCTTTAGGGGAAGCAGGAAATCTAGAATGAGGAACATTACTTGTATTGATATGTTGATTCTGCTAACTTAGAAGCTCCCATTGAAGATATATTTTGAATATCCCATCCCCCCCTCACACCACTCAAATTAAGCTTGTTTGATGGATTCTGCTACAATCCTGTATGTGTATAACTTGCTTTTGAGTGAAGTTGAATGCTCCTATTGACTGAACTGCTGAAGCTGATCTGGTGGGGGGTTGCCTTCCATGTGGATTTCTTGTCATGGAAGCTATACTACTCTTATATGCCTATTTCTGCAATTTTATAAATTATTTTAGGGTCTCCATTTATTATCCCAAAAATTGGGTTTCCAATGAGTGTTGGTAAAAACGATGGAAGCCAAAGTTACAGTGCAGTTGTGAAGAGTCTGTAATTTCTCCAATAATCTTTTCATACTAAGGTGTACTAATATTATTTATTATCTGACCAAATTCCCTTTTGGGCCTCTATATTCTGTCTTATCTTTTAATATTTGCTAACTGGAATGTCTACCAGGTATGGACAACGAAATATTTAATGTTTGTTGCATTAAAAGCAGAAATAATACTTCTTGTCAGCCTTTATTTCTCCATTGATGTTTTGTCATTGAATTCTGTTTCATTTTTGTAGAAATTTCTCATTTGTATTCGTTATTTTTTTTAGTAATGATTAATGTGAAAGTGAATGATAGAAACGAAATTGAAATGTACTACTGTCAAGTGTTGATATCAAATGGGGTTTCAGTAGGTTACCAGTAAATCAAATTTTTGACCTCAATAAATAAAGATTTTGGAGCATTCCATTGTTT

mRNA sequence

TATCCTTCCTCTCTTCCAATTGGGAATTTTCCTAAAAACCCTAAATCAACGATCTTTCTTCTTCGTCTCCACCGTTCTATCGATCTTCTTCGGCAACGGAAGAAAAGTTCATCCGCTAGTCATATTTTCGATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAGAATCATTGCATAGTCCGTACCATCCATCCCCTTGCAAGCTAGAAAAGAAGTCTTTCTCCATTGCTGTCTTGCTAAGATTTGCCATAGAGTCTTCAAACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCGCTTCTCACAAATACTAGAGGTCCCAAGGAAGCTTTTGAAAGATCTGAAGAGTGTATTAGACATTTTATTGTATGGTTTTAGATACTATTATGTAGACTACTGCCAGCTAGTTTGTGCCTATATATGGTTGTCCTGATCTAGTACAATTTCAATGTAGTGTGATATGGTGTAGGCTTTAGCATATACTTTTTTTTGGTTGTGTTTATTCCTCACATTAGTTTGATATCTAGATAGATTTATTATGTCCTATAAATATGCCCTAGTCTTCTGCTCTTATTTTAGTTTGTTGATGATAGATTGCTTGTAGAAAAAAAAAACAAATTTCCCAGTTCATACTGTTTTAAAATCAGACAGAGGATTGCTTTAGGGGAAGCAGGAAATCTAGAATGAGGAACATTACTTGTATTGATATGTTGATTCTGCTAACTTAGAAGCTCCCATTGAAGATATATTTTGAATATCCCATCCCCCCCTCACACCACTCAAATTAAGCTTGTTTGATGGATTCTGCTACAATCCTGTATGTGTATAACTTGCTTTTGAGTGAAGTTGAATGCTCCTATTGACTGAACTGCTGAAGCTGATCTGGTGGGGGGTTGCCTTCCATGTGGATTTCTTGTCATGGAAGCTATACTACTCTTATATGCCTATTTCTGCAATTTTATAAATTATTTTAGGGTCTCCATTTATTATCCCAAAAATTGGGTTTCCAATGAGTGTTGGTAAAAACGATGGAAGCCAAAGTTACAGTGCAGTTGTGAAGAGTCTGTAATTTCTCCAATAATCTTTTCATACTAAGGTGTACTAATATTATTTATTATCTGACCAAATTCCCTTTTGGGCCTCTATATTCTGTCTTATCTTTTAATATTTGCTAACTGGAATGTCTACCAGGTATGGACAACGAAATATTTAATGTTTGTTGCATTAAAAGCAGAAATAATACTTCTTGTCAGCCTTTATTTCTCCATTGATGTTTTGTCATTGAATTCTGTTTCATTTTTGTAGAAATTTCTCATTTGTATTCGTTATTTTTTTTAGTAATGATTAATGTGAAAGTGAATGATAGAAACGAAATTGAAATGTACTACTGTCAAGTGTTGATATCAAATGGGGTTTCAGTAGGTTACCAGTAAATCAAATTTTTGACCTCAATAAATAAAGATTTTGGAGCATTCCATTGTTT

Coding sequence (CDS)

ATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAG

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR

Homology

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BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-33
Identity = 133/412 (32.28%), Postives = 195/412 (47.33%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGF 78
           GK+F+GG++ +T                 + +  +HF  YGE++ +++M+D+ TG+PRGF
Sbjct: 6   GKLFVGGISWET----------------DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 65

Query: 79  GFITYADPSVVDK------------VEIKRTI----------------PKGQGQSKDFKT 138
           GF+ ++DPSV+D+            V++KR +                 +  G     KT
Sbjct: 66  GFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT 125

Query: 139 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 198
           KKIFVGG+P T+T++EF+ +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L 
Sbjct: 126 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 185

Query: 199 KGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGP 258
           K    D+SG QVE+K+A PK ++     P  G  S     + G+ GYGG+   +D     
Sbjct: 186 K-TFHDLSGKQVEVKRALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS 245

Query: 259 GPFRNPGGIGGRI--------GSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSR- 318
             F     +G  +        G+GYG GS+G   G YGG+ G S GGY   ++ GY +  
Sbjct: 246 NRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTG-SAGGYGAGATAGYGATN 305

Query: 319 -----FG-------------PYSGGFGG-GYGTS-------------------------- 349
                +G             P S G+G  GYG+                           
Sbjct: 306 IPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGY 365

[Close]

BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot
Match: P21522 (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-28
Identity = 139/367 (37.87%), Postives = 181/367 (49.32%), Query Frame = 0


Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIM 67
           EN H G+     K+FIGGL   TT                     +HF ++GEI D V+M
Sbjct: 7   ENDH-GEPEHVRKLFIGGLDYRTT----------------DESLKQHFEQWGEIVDVVVM 66

Query: 68  KDRYTGQPRGFGFITYADPSVVDK-------------VEIKRTIPKGQ-GQSKDFKT-KK 127
           KD  T + RGFGFITY+   +VD              VE KR +P+ + G+ +   T KK
Sbjct: 67  KDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKK 126

Query: 128 IFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI-LSK 187
           +FVGGI   + E++ + +F +YG VV   I+ D ET + RGF F+ F++ + VD+I LS+
Sbjct: 127 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSR 186

Query: 188 GNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPG 247
            + I   G  +++KKA PK  +        G   R        GG+GG  GD+    G G
Sbjct: 187 NHQI--RGKHIDVKKALPKGDA----PGGRGGGGRGGVGGGAGGGWGGGRGDWGGSAGGG 246

Query: 248 ---------PFRNP--------GGIGGRIGSGYGYGSSGDFGGG--YGGFGGNSLGGYRG 307
                    P+ N         GG GG +G G  +G  G  GGG  YGG GG S GG+  
Sbjct: 247 GGGGWGGADPWENGRGGGGDRWGGGGGGMGGGDRWGGGGGMGGGDRYGGGGGRS-GGWSN 306

Query: 308 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 340
           D   GY+S  GP S GFGGGY  S  GG  RG  GYG   S+ Y    D G   S GG G
Sbjct: 307 D---GYNS--GPQSDGFGGGYKQSYGGGAVRGSSGYGGSRSAPYS---DRG---SRGGGG 338

[Close]

BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot
Match: P09651 (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-26
Identity = 129/360 (35.83%), Postives = 174/360 (48.33%), Query Frame = 0


Query: 5   SKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDS 64
           SKSE+P   +     K+FIGGL+ +TT                      HF ++G +TD 
Sbjct: 2   SKSESPKEPEQLR--KLFIGGLSFETT----------------DESLRSHFEQWGTLTDC 61

Query: 65  VIMKDRYTGQPRGFGFITYADPSVVDK-------------VEIKRTIPKGQGQ--SKDFK 124
           V+M+D  T + RGFGF+TYA    VD              VE KR + +   Q       
Sbjct: 62  VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 121

Query: 125 TKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEIL 184
            KKIFVGGI     E   + +F +YGK+   +I+ D  + + RGF F+ F++ + VD+I+
Sbjct: 122 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 181

Query: 185 SKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGF-GGYGGSYGDFDAGF 244
            +     ++G   E++KA  K+        +  S+ R RS +  F GG GG +G  D   
Sbjct: 182 IQ-KYHTVNGHNCEVRKALSKQE-----MASASSSQRGRSGSGNFGGGRGGGFGGNDNFG 241

Query: 245 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGP-YSG 304
             G F   GG GG  G G GYG SGD   GY GFG +  GGY G          GP YSG
Sbjct: 242 RGGNFSGRGGFGGSRGGG-GYGGSGD---GYNGFGND--GGYGGG---------GPGYSG 301

Query: 305 GFGG-GYGTSGLGGYGRGVDGYGSYGS--SGYGGGYDSGPGASYGGAGGLYGRGGYSGSS 345
           G  G G G  G G  G G  G GSY S  +G GGG+  G G+++GG G     G Y+  S
Sbjct: 302 GSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQS 322

[Close]

BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot
Match: P51992 (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis OX=8355 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-26
Identity = 130/360 (36.11%), Postives = 174/360 (48.33%), Query Frame = 0


Query: 20  KIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGFG 79
           K+FIGGL+ +TT                     +HF ++G++TD V+M+D  T + RGFG
Sbjct: 28  KLFIGGLSFETT----------------DDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 87

Query: 80  FITYADPSVVD--------KVEIKRTIPKGQGQSKD-------FKTKKIFVGGIPSTVTE 139
           F+TY+    VD        KV+ +   PK     +D          KKIFVGGI     E
Sbjct: 88  FVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEE 147

Query: 140 DEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI-LSKGNMIDMSGTQVE 199
              + +F  YGK+   +++ D ++ + RGF F+ F++ + VD+I + K + I++   +V+
Sbjct: 148 YHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVK 207

Query: 200 --IKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGG 259
             + K E + +S        GSN   R  N G GG GG  G+F  G   G F N GG GG
Sbjct: 208 KALSKQEMQTASAQRGRGGGGSNFMGRGGNYG-GGDGGGGGNFGRG---GGFGNRGGYGG 267

Query: 260 RIGSGYGYGSSGDFGGGYGGFGGNSLGG-YRGDSSLGYSSRFGPYSGGFGGGYGTSGLGG 319
             G G GYG  GD   G+GG GGN  GG   G    G S  +G   GG+GGG G  G G 
Sbjct: 268 GGGRGGGYGGGGDGYNGFGGDGGNYGGGPGYGGRGYGGSPGYGNQGGGYGGGGGGGGAG- 327

Query: 320 YGRGVDGYGSYGSSGYGGGYDSGPGASYGG----------AGGLYGRG-GYSGSSRYHPY 350
            G G DGY   G+ G G   D G   SYGG          AG   GR  G SG S   PY
Sbjct: 328 -GGGYDGYNEGGNFGGGNYNDFG---SYGGQQQSNYGPMKAGNFSGRSTGGSGGSSSGPY 362

[Close]

BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-25
Identity = 128/348 (36.78%), Postives = 169/348 (48.56%), Query Frame = 0


Query: 20  KIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGFG 79
           K+FIGGL+ +TT                     +HF K+G +TD V+M+D  T + RGFG
Sbjct: 36  KLFIGGLSFETT----------------DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 95

Query: 80  FITYADPSVVD--------KVEIKRTIPKGQGQSKD-------FKTKKIFVGGIPSTVTE 139
           F+TY+    VD        KV+ +   PK     +D          KKIFVGGI     E
Sbjct: 96  FVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE 155

Query: 140 DEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 199
              + +F KYGK+   +++ D ++ + RGF F+ F++ + VD+I+ +     ++G   E+
Sbjct: 156 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ-KYHTINGHNCEV 215

Query: 200 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFG-PGPFRNPGGIGGRI 259
           KKA  K+        + GS       +  F G GG++G     FG  G F   GG GG  
Sbjct: 216 KKALSKQEMQ-----SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGG-- 275

Query: 260 GSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 319
           G G   GS G   GGY GFGG+  G Y G    GYSSR G Y GG G GYG  G GGYG 
Sbjct: 276 GGGGSRGSYGGGDGGYNGFGGDG-GNYGGGP--GYSSR-GGYGGG-GPGYGNQG-GGYGG 335

Query: 320 GVDGYGSYGSSG-YGGGYDSGPGASYGGAGGLYGRGGYSG--SSRYHP 349
           G  GY  Y   G +GGG       +YGG G     G YSG   S Y P
Sbjct: 336 GGGGYDGYNEGGNFGGG-------NYGGGGNYNDFGNYSGQQQSNYGP 346

[Close]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL
Match: A0A5A7U1Z1 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001410 PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 7.9e-173
Identity = 330/363 (90.91%), Postives = 331/363 (91.18%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL
Match: A0A1S3CI79 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501266 PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 7.9e-173
Identity = 330/363 (90.91%), Postives = 331/363 (91.18%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL
Match: A0A0A0K3W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 1.8e-172
Identity = 329/363 (90.63%), Postives = 331/363 (91.18%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL
Match: A0A6J1IWT7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480620 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.8e-168
Identity = 321/363 (88.43%), Postives = 326/363 (89.81%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGDYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDE KHFFSK+GKVVEHQIIRDHETNRSRGFGFIVF+EEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFR  GG+GGRIG GYGYGS GDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL
Match: A0A6J1FLG0 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446490 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.8e-168
Identity = 321/363 (88.43%), Postives = 326/363 (89.81%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGDYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDE KHFFSK+GKVVEHQIIRDHETNRSRGFGFIVF+EEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFR  GG+GGRIG GYGYGS GDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. NCBI nr
Match: XP_008463022.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0048257.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa] >TYK08000.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 616.3 bits (1588), Expect = 1.6e-172
Identity = 330/363 (90.91%), Postives = 331/363 (91.18%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. NCBI nr
Match: XP_004149406.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390.1 hypothetical protein Csa_015841 [Cucumis sativus])

HSP 1 Score: 615.1 bits (1585), Expect = 3.6e-172
Identity = 329/363 (90.63%), Postives = 331/363 (91.18%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. NCBI nr
Match: XP_038899501.1 (heterogeneous nuclear ribonucleoprotein 1 [Benincasa hispida])

HSP 1 Score: 612.1 bits (1577), Expect = 3.1e-171
Identity = 330/365 (90.41%), Postives = 332/365 (90.96%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFGKYGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEF+HFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFQHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYG SYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGSSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRG+SSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYS--GSSRY 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYS  GSSRY
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGTGSSRY 349

[Close]

BLAST of Lsi02G018140 vs. NCBI nr
Match: XP_022941092.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_022981531.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima] >KAG6607739.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 600.1 bits (1546), Expect = 1.2e-167
Identity = 321/363 (88.43%), Postives = 326/363 (89.81%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGDYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDE KHFFSK+GKVVEHQIIRDHETNRSRGFGFIVF+EEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFR  GG+GGRIG GYGYGS GDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. NCBI nr
Match: XP_023525200.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 597.8 bits (1540), Expect = 6.0e-167
Identity = 320/363 (88.15%), Postives = 325/363 (89.53%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTY----------------TQFNKHFGDYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDK            VEIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDE KHFFSK+GKVVEHQIIRDHETNRSRGFGFIVF+EEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFR  GG+GGRIG GYGYGS GDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYG SGY GGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]

BLAST of Lsi02G018140 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 413.7 bits (1062), Expect = 1.5e-115
Identity = 250/376 (66.49%), Postives = 275/376 (73.14%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT                   FNKHFGKYGE
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTT----------------NTVFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQG--QSK 120
           ITDSVIM+DR+TGQPRGFGFIT+ADPSVVDK            VEIKRTIPKG G  QSK
Sbjct: 61  ITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSK 120

Query: 121 DFKTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVD 180
           D KTKKIFVGGIPSTVTEDE K FF+KYG VVEHQ+IRDHETNRSRGFGF++F+ EEVVD
Sbjct: 121 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 180

Query: 181 EILSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDA 240
           E+LSKGNMIDM+ TQVEIKKAEPKKS N  P P+YGS+ R RS ND +  YGG YG FD 
Sbjct: 181 ELLSKGNMIDMADTQVEIKKAEPKKSLNRSP-PSYGSHPRGRSSNDSYASYGGPYGGFDG 240

Query: 241 GFG--PGPFRNPGGIGGRIGSGYGYGSSG---DFGGGYGGFGGNSLGGYRGDSSLGYSSR 300
           G+G  PGP R+ GG   R   GYGYG      +FGGGY  +GG SLGGYR +  LGYSSR
Sbjct: 241 GYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSR 300

Query: 301 FGPYSGGFGG-GYGTSGLG---GYGR-GVDGYGSYGSSGYGGGYDS-GPGASYGGAGGLY 352
           FGPY  GFGG GYG  G G   GY R G +GYG YG  GYGG Y+S GPG SY GAGG Y
Sbjct: 301 FGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPY 358

[Close]

BLAST of Lsi02G018140 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 290.8 bits (743), Expect = 1.5e-78
Identity = 206/414 (49.76%), Postives = 250/414 (60.39%), Query Frame = 0


Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMK 69
           PH+G G  S GKIF+GGLA++TT                 A+F KHFGKYGEITDSVIMK
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETT----------------SAEFLKHFGKYGEITDSVIMK 91

Query: 70  DRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQGQSKDFKTKKIFVG 129
           DR TGQPRGFGF+TYAD SVVDK            VEIKRTIP+G   S DFKTKKIFVG
Sbjct: 92  DRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVG 151

Query: 130 GIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMID 189
           GIPS+V +DEFK FF ++G++ EHQI+RDH T RSRGFGF+ +E E++VD +L+KGN I+
Sbjct: 152 GIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIE 211

Query: 190 MSGTQVEIKKAEPKK-SSNPPPAPAYGSNSRARSFNDGFG-GYGGSYGDFDAGFGPGPFR 249
           +SGTQVEIKKAEPKK +S   P+  +G +SR+ +F  G+G GYGG +G    G G GP++
Sbjct: 212 LSGTQVEIKKAEPKKPNSVTTPSKRFG-DSRS-NFGGGYGDGYGGGHGGGYGGPG-GPYK 271

Query: 250 NPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG------ 309
           + GG GG    GYG G  G+FGG  GG  G  +G YRG+ +LGYS R+G   GG      
Sbjct: 272 SGGGYGGGRSGGYG-GYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGY 331

Query: 310 ---------------------------------FGGGYGTSGLGGYGRGVDGYGSYGSSG 352
                                            +GGGYG+SG+GGYG G+ G G  G  G
Sbjct: 332 SMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRG 391

[Close]

BLAST of Lsi02G018140 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.7e-71
Identity = 138/200 (69.00%), Postives = 154/200 (77.00%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT                   FNKHFGKYGE
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTT----------------NTVFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDK------------VEIKRTIPKGQG--QSK 120
           ITDSVIM+DR+TGQPRGFGFIT+ADPSVVDK            VEIKRTIPKG G  QSK
Sbjct: 61  ITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSK 120

Query: 121 DFKTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVD 180
           D KTKKIFVGGIPSTVTEDE K FF+KYG VVEHQ+IRDHETNRSRGFGF++F+ EEVVD
Sbjct: 121 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 180

Query: 181 EILSKGNMIDMSGTQVEIKK 187
           E+LSKGNMIDM+ TQV + K
Sbjct: 181 ELLSKGNMIDMADTQVSLYK 184

[Close]

BLAST of Lsi02G018140 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 175.3 bits (443), Expect = 8.9e-44
Identity = 135/359 (37.60%), Postives = 186/359 (51.81%), Query Frame = 0


Query: 16  ASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQP 75
           +SPGK+F+GG++ +TT                   F  +FGK+GE+ DSVIM DR TG P
Sbjct: 63  SSPGKLFVGGVSWETT----------------AETFANYFGKFGEVVDSVIMTDRITGNP 122

Query: 76  RGFGFITYADPSVVD------------KVEIKRTIPKGQGQS---KDFKTKKIFVGGIPS 135
           RGFGF+T+AD +V +            KV++KRT+P+G   +      KT+KIFVGG+P 
Sbjct: 123 RGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPP 182

Query: 136 TVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT 195
            + EDE K++F  YG ++EHQI+ DH T RSRGFGF+ F+ E+ VD + S G + ++   
Sbjct: 183 LLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDK 242

Query: 196 QVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIG 255
           QVEIK+AEPK++                  ++ F  YG S          G +       
Sbjct: 243 QVEIKRAEPKRTGR----------------DNSFRSYGAS----------GKYDQEDSYS 302

Query: 256 GRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTS---- 315
           G+    Y   S      GYGG+GG   G Y G+S +  +  +G Y GG+G GYG      
Sbjct: 303 GKANEDYSMYS------GYGGYGG--YGAYAGNSMVNPAGFYG-YGGGYGYGYGYGGQMF 362

Query: 316 ----GLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 352
               G GGY     GYG   ++ YGGG   G G +   +G   G  G SG  RYHPY +
Sbjct: 363 NMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNGNNGSSSGKGNGTNG-SGPDRYHPYQK 369

[Close]

BLAST of Lsi02G018140 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.6 bits (366), Expect = 7.6e-35
Identity = 133/412 (32.28%), Postives = 195/412 (47.33%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGF 78
           GK+F+GG++ +T                 + +  +HF  YGE++ +++M+D+ TG+PRGF
Sbjct: 6   GKLFVGGISWET----------------DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 65

Query: 79  GFITYADPSVVDK------------VEIKRTI----------------PKGQGQSKDFKT 138
           GF+ ++DPSV+D+            V++KR +                 +  G     KT
Sbjct: 66  GFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT 125

Query: 139 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 198
           KKIFVGG+P T+T++EF+ +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L 
Sbjct: 126 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 185

Query: 199 KGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGP 258
           K    D+SG QVE+K+A PK ++     P  G  S     + G+ GYGG+   +D     
Sbjct: 186 K-TFHDLSGKQVEVKRALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS 245

Query: 259 GPFRNPGGIGGRI--------GSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSR- 318
             F     +G  +        G+GYG GS+G   G YGG+ G S GGY   ++ GY +  
Sbjct: 246 NRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTG-SAGGYGAGATAGYGATN 305

Query: 319 -----FG-------------PYSGGFGG-GYGTS-------------------------- 349
                +G             P S G+G  GYG+                           
Sbjct: 306 IPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGY 365

The following BLAST results are available for this feature:

BLAST of Lsi02G018140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	1.1e-33	32.28	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
P21522	3.9e-28	37.87	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americ...	[more]
P09651	1.6e-26	35.83	Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE...	[more]
P51992	2.8e-26	36.11	Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis OX=8355 P...	[more]
Q8BG05	1.4e-25	36.78	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]

BLAST of Lsi02G018140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1Z1	7.9e-173	90.91	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3CI79	7.9e-173	90.91	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350126...	[more]
A0A0A0K3W8	1.8e-172	90.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1	[more]
A0A6J1IWT7	5.8e-168	88.43	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FLG0	5.8e-168	88.43	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Lsi02G018140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463022.1	1.6e-172	90.91	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0048257....	[more]
XP_004149406.1	3.6e-172	90.63	heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390.1 hypothet...	[more]
XP_038899501.1	3.1e-171	90.41	heterogeneous nuclear ribonucleoprotein 1 [Benincasa hispida]	[more]
XP_022941092.1	1.2e-167	88.43	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_02298153...	[more]
XP_023525200.1	6.0e-167	88.15	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G018140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13224.2	1.5e-115	66.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G40490.1	1.5e-78	49.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.1	1.7e-71	69.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	8.9e-44	37.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	7.6e-35	32.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 20..109 e-value: 4.7E-7 score: 39.4 coord: 112..185 e-value: 3.9E-20 score: 82.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 49..90 e-value: 9.5E-8 score: 31.8 coord: 113..179 e-value: 9.9E-17 score: 60.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 111..189 score: 18.461504
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 19..115 score: 10.530743
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..98 e-value: 2.9E-15 score: 58.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 99..223 e-value: 5.9E-25 score: 89.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..205
None	No IPR available	PANTHER	PTHR48033:SF6	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..351
None	No IPR available	PANTHER	PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..351
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 103..219
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G018140.1	Lsi02G018140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding