Lsi02G017800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G017800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	COP9 signalosome complex subunit 6
Location	chr02: 23564658 .. 23573751 (-)
RNA-Seq Expression	Lsi02G017800
Synteny	Lsi02G017800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACACATGTATATATAAACCTGCATGAGTAAACCGTAAAATTCCGAAGGCCACGGAAACTTTCCCTTAGAGCTTCTTTCAGAAAGTTTGGAGATTTGTGAAAACAGAGCATGGATGAATGAGAATTGAAGAACAACGAACTTGAAGATTTCAGCAAACAGTGTTAAATCTGCCCTTCTGTGTTCCATTCTCTCTGATTTTGAATTCTAGGTCAAGCAAATCTTGGATCATCGATCGCTTGTTCCTTGTTGCAATCGATCATGGCGTCGTCTGGCAGCGGATTGACATTCAAGCTACACCCCCTTGTGATTGTAAATATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCTTCCTTGACCTGCTCAGCTCCATCTCCTTGCGCCCTAAGTAATGGCGCCGATGTAGCCGATTCTGCGGACCCTTCTACTTCTCCTCCTGCACCTAGGGTTTTCGGTTGTGTTGTTGGAGTTCAGAGGGGCCGCACGGTTGAGATCTTCAACAGCTTCGAGCTTCTTTATGACCCCAAAACTCATTCACTGGACCGCCCCTTCCTTGAGAAGAAGCAAGAGCTCTGTTAGTAATTCCGGACATTTCTTTCATTTCTCTTTCGCTTTTTGCTTAGTGTTGGTTTTATTATTTATGACGATTGAGTTACGCTCTTGTTTGTTTGGAGCAGATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTGTGAGTTATCATTTAAAACTGCTATCTTACTGTCTTGGCACACAGTTGTTTACAGGGTTTTCACATTCTCATTTTTTGAAAAAATAGATTTGAAAGATATCCAATTGATTTATTATTAACTCTATACTTCTTGCCTCCTGCATATGTATGCGTGTGGATGCATGTACATTCATGTGTTTGAACCACCACAAATCCTTTTTTTCTTTTGCTGACAAGATAATTTTAGAAAAAATGAAAGAATACCAGGCATAAAAAATATTAAGTCCACAAAAGGGACTCCAATTAGACTGAAGCTTACGCTTCGAGGCAAGGCTCTAACTTTTAGCCTTGAGACTTACACCTCCTTTGAACCACAAAAGGCTTGCTCCTTCGTAAAAACACACAGGCATAAAGTCTCCATGTGTAATGATTAGAAGAATAATATTACTTCGGATTGAAAATATGATGAATGTGTTCTCTAGCATTTTTTATTAGTTTTCCTTACTGGGCAAGCGGGGGGCATTAGCGTTAGTTTGACCACCAACAACTTTTTGGCTTGGACAATCTCCTTTTTCAGCAGTACTCTATATTTACCAAGAGGCTTCACGGAGTGACTGACTTTCAACTAGCTCAATGCTCATCAAATTTAAATGTGAGGTCTATCTTGGAGAATGGATTTCTTGTGCTGTTAGTAGAGTTGGATGCAAGAACATTGTCACGAGCAAGATTCAAACATACACCTTTAGAACAACTTTTATGAGAGCCCTTTCTAAACTTTATCAACTAGTGGGTCCTAGAATGAAGAATTTCTAGGGTTATGACCTAAAGGCATTCCTGAATGTACCACAAGAAAGAAGTAACCTTGCAATCAAACATATTAATCCACCTCCTTGGTTTAACCTCATCATGATGGATACTTGCTATGAAACACTTCTTCCTATTTACATGGAGCCCAACATTAACTGCAACAAATATGCAAAACTTACATTAAGCTGTAGAACAAGGTCTTATCCCTTAACCAAAAGAAAGTAGTATCATTAGCTAAATGGTCTTGTCATCAATTGTAGAAATTGGAGATGGGTCGTTTTGTTGTATTCTTTGTTGGAGGGCGGAGGACGATCTGGTTCATTTATTCTGGAATTGTTGTTACACTAAGTTAAGTGTGGAAGAAACTACTTTTTTTGGAGGGATTGACATTTAGATAGCCCGTCACAAAGCTATTAATGACGTGATGAAGGAGTGTTTCGAGAGAAAAGGAGTTTTTTATGGAAAGTGGGGGTGTGTGCATTGAGTTATGGGGTATTTGGGGTGGGAGAAATAACATGGTTTTTAGGGGCATTGAGAGGGAGTCTTTGGATGTTTGGACCCTTGGGAGATTTGTGGTTTCTCTTTGGGCTTCAGTGAGGAATTCCTCCTGTAATTAATATGCTTTGTTTTATTTTGCTTGATTGTAGCCCCTTTCTATAGAGTGCTCCCTTTGTGGGCTTGGGTTTTTTTATATGCTCTTGTTTTCTTTATGTTTTCTCAATAAAAATTATTGGGGAAAAAAAAAAAAATGAAAAAGAAAAATTATGTGAGGGCATAGGAATGTTAATTTTTAGTGAAAGGTCTGAAATTCTCAATGAAAGTTCTGAAGTTCTCAATTTTTAGTGCTATAGTCTCTTTATGTGAGGGCAAAAGAATGTTTTATTTGTATTCCTACGATACCCTCTTGAAAAATCTATTGAACACTCAAACCAAATCATCTTCTATGAAATACTCACTGTTCAGGGAAAAAAGAAAAAATCCATTAATTATCTGTCTTACCTCCGTTCTGTCTCAACTAAACTTGGCATTTCTAATTTCCTATTGGGTAAAATGTTGTTCAAGTAACTCCCAATCTTCTCCGAGTATCGGGTAGCAACAAAGATTCTAGAGACTTATCTAGAGCATACAAGGAGGTGACCAAGGATTCTAGTTTGTGAAGGTCACTCAAATTTTTGTACTTTGACCACTAAGATTTCTAGTTTTAGTTAGCTTTAGGCGTTTTTGTTCTAATAGGAACTCCCTATTTATAGCCTTTCCTGATTGGTTAATGGTCAAAAAAGGAAGCAAACATTCAAATGCCTTTAATCACAAGTCCGTAGCTTGAGAGGGCCATTGGTGTCTGGTGATAGGGTTCACCCCTTGCTTGATGACTTTTCCTGGAGGCCGTGCAAAAGGGATTTGCTACAGTTGCTGAGGGGAGGTGGGGGTGACAGGAGTTAGGGGTGGGCTTGATGAAACTAGTGTCATGCCACTCTATTAGCATCCATCTTATAGAGAAGTTTCTAGTTTATTGGCTGATGTTTTTCCGGTCTTTACAGTTTGGAGTTTTATTTATTTAATAGAGTTCAGAATATGTTCACATTATTTTCCATTCTAATTTGTCTTTGTCTTTTATCAAAAAAAGCTCTTAAGAGTTAAGACCAGCCTTTGTCTAGTTCTACTCTCTCAAACACTTTTTATAATTATGCTTGTACTAACCAAAAAAAAAAAATAATAATAATAATAATAAATAATTATGCTTGTTCTCTAACTTTGATCAAAGCCAATTAAATGTTCTATGTAATCTTCCTAGCCTTCTTCGGGAGGATAGTAGCTTACTTTATGTATTTAGCTTTCAATGATGGAACTCAATTTCTTATGAGAACAAGAGAGAATATATAGTCCGTTAGATGTAATTATTATTATTTTTTTCTTGATGGAAAATTAGAGGACTATAATGGATATAATTGTACTTCAGTTAATTTTGATGAGCTTTCTGACTTAACAGTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCGGTTACGATTTACGAGAGTGGTAATATGTCTTGTTTTTTTTCTTCTTATTTACATGGTTTTTGTCTGCAGTGCCAGTACTTCATTTCCTCATTATTCGTTTTATCCATAAATTTCTGTGCTAATATGATAATTCATTTTTTTCCATTACTCTAATGCCACTTCTTAGGTATAGAATCCATTATTTCCTTAAAGGGTGCATACTAGCGTGCATAGTTTAGTCTTCATTTATTCAGGGATTGTCAAATTATTCTTAAGCCCTGGTTTTTACTCTCTTTTTTCTAATAATATTTTTGGCACTCAACTATCATGTTGGGAAGCATCAAGAAGTCAATAACTTTTCTCTTGGATGGTCACAAGTTCGAGGACAAGAACAAAGTTCCTGGTGTTGGAGTTTCTGTCTATTCTGTGTGAAGTTTTGAGCAAAAGAAATTGGAAACTATTCCAAGCTTTGGAGAAATCTTGGATGGATGTTTGGGATCTAATTATTTTTGTAGCTTCCTCTTAGGGTCCAGTTTTTCTGAAGCTTTCGCGCCTTTTTTCAACATTTACTTTATCAACGAAATAGTTAGAAGTAAATAAGAACTTTTTTGAACAATACCTCAATCATGCTTGGCTTTGCTGGAGTTAAAAGTCTTTTCTTTTCCTTCCTTTTTTTTTTAATTATTATTATAACTATTTTTTATTTATACTGGTTGGCTTTGCTGCATGTTTTTTTTTGGCTTTTATGGGGCGAGAGAAATGGACGCCTTTTTTTGACTCTTTATCCACTTTCGATAGGTTTTTAGAATCTGTTCTTTTTATTGCTTTTTCTTGGTACAAAATAAGGCACCCTTTCAAGCATTATAGTTTATTTTCTTAGTTAGCAACTGACAATTTCTCTTGTAATCACCTATAGGTGTTTTGGGGTTTTCCCATAATTTCATTTATCAATGAAATGTTTCTTTATATATATATATATATATATATATAATTTTATATTTAAAAAGCCTTTTTTAGTTAAGAGATACTTAGTAAGTTGTTTTCCGGGAACAATCATGGATTTGGGAAAGAATCGTTCGTATATAGCCAAGAGGAAAACTTTGGAATGTTAGTTTTCGTAGTTTGTTGACAGAAACGACAAAGGCTCTCATCTATCTTTGATAGGAGAGTTTGACTTTGGGGAGAAGGGATGTTTTTGTTTGGAGTCTTGATCCTTTAGAGGGATTCTCTTGTAAGTCCTATTGGATCCCTCTGTTGTTAGTGAATTTGTCTTTGATATTTTGTAGAGGATTAAGATTCTAAAGAAAGTGAAGATTTTTACCTGGGAAGTTTTACTCGGTCATGTGAACACTATGGATCGGTTTTCAAGAAAGATGCCTTCGTTAGTAAGTCCGTGTTCTTGTATTTTTTGTTAGAAGGTGGAGGGACCTAAATCATCTACTTTGGAATTGTGAGTTTGTGCGGTCTGTGTGGAACCGCTTCTTCCAAAAGTTTGGGTTTATGCTGGCGTTCTAGAGGGACGTCAATAGATCAACTGGGGAGTTCCCCTTCATTCGTCCTTCAGAAAGAAGGGTCGTTTTTGTGGTTTACGGGGTGTGTGCGCATATTGGACCTTTGGGGAGAAAGTAATAACAAAGTTTTTAGAGGTGTGGAGAGGTACCCTAGTGATGTTTCGTCATGGGTGAAATTTCATGTCTCCTTTTAGGCTTTGATTTCGAAGACATTTTGTAATTATTCTTTAGGCAACATTTTATTTTGTTGCTCCCCTTTATTTATTGGGGTTTCTGTTGGTTTCGTTTTTTGTATGTCCTTGTATTCTTTCATTTTATCTTAATGAATGCACTTATTTCATTAAAAAAACCCTGGAACGTTAGCAATATGGTGTTTGTCTTTTTTGGCTAACTACCACTGAAATAAAAAATATTTGGTGTACAATATGGACTACTAATGTTTGTTTGTGAGAAGTGAATGTGAAACTTTGACTAATTAAATCATGAGGTCTTTTTAATGTCTGGTTTACAAATTTGTTGCACTAATCACTCGGTCCACCCAATATCACCTTGTTTTTCGCGTCCTCAATTTAGAGATGTCACTAGCACATATAATAGCATGTCGCATGTCACAAGGGTGTGCCCAGTCACGTGGCATTGACTGTCTAAATTAATCAGAGTATAAATTTTTTTAGTTTGGGCTCTTTGAAAGCTATTTTAACCAAATGCCTTCCAAGGGTAATCATCATGGGTTGAACGAAGTGGACGGGTAGTTTTGTTTTTGTGAACCCTAGTGAAAATTACTTGTCTTACTCTTAATGCCTACATTATACATCAATGGTAATGTATTTCATTGAAACATACTTATTATCACAATATTCGCACAGTAAAATTCCACTGGATTGAGAAAAAGAATTGTTTGCATGGTGGTATTAACTCATGTTTTTTGTTTGTGGTTTGTACAACTATAGAGCTACATGTTATTGAAGGGATCCCTCAGCTAATTTTTGTTCGCTCAAGTTACACTATTGAGGTTTGTTCGCTCTGTCGCTGCTTGAGTCCTTCAAACATGTTGCAATTCTGGTTATTGAGTTTCTTGCACATTTTTTCTGTTCTTACTCTTCAAAGACAGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCTACTCAACGTGAGTGATCCTATACCTCTGATTATTTCAATCTGGGGTTAAACCTCGTTAGTACTTATTGCCAGAAAGAAGAACATTACGCTTTGATATGTACTGATATGTTTATAATGAGAGAAATTTGGTCTTGAATGCAGTGGCTGCTCACCTTGCGGGAATTCACAGTGCCATCAAAATGCTGAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTATTTTTCAATTCTTTACTATTCGTAAAAATGTTTATGATGAAAAAGTTGGGTATAAAAAGCAGGGTGGTTATTCCTTTTCTTTTTATCAGTTTTTGTCGGGCTCTGATTTCTGATCATTCATCAGAACATAGCTGCTACATTTAGTGGTTTCTGACGGGCTTGTGAATTCCTCATGTAAACTTGTGATTAAATGGCTCAATTTGAGACTGATTTTTTCTCTCTGTTATTCTTTGATTCAGGTGATATTCCCTTAGAGAATTCCTTACTAAGACAAGTGTCAAGTTTGCTCAGAAGATTGCCAGTTACTGAATCTGGAAAGTTTCAAGACGATTTCTTGATGGTGAGTGCTAGAATGTCACATGTCATTTTCGTGGCCCAGTTTCTCCTGCAGTTAAAAACTTAAATGTTCGCACCAAAAATTCAGACATTACGTTGATTTTGTGATTAGTTATTCTTACTTCCATAATGTCCCTCCTTTCAGGAATATAATGACACAATGTTGATTACGTATCTAGCAATGTCCACTAATTGCTCAAGGTATGATATTTCTTATCATATTGTATACTTTCTCGTTGTATTGTACCAAAATATTTTGGTTAATAAATTAGGTAAAACGTTATACATCTTTAGATGTGGAATACTATATATGGCTGCTAACTAGATTAGAATCACTAGCATATGCTCAGTAAAATATGATCTCAAAAATAGAACTAGTACTCTGGCAATGCCAAGTGCGAGGTAAAGAAAGTATGCTTCCATAGCAGTTTGCGAGATAAATAAAGTATGTTTCCAGAGAAGTTTTGTCTACACTTCTACCTATTTTGACTCTTTCAAAGCTTATATGATAGAAGATTTAAACATTTTTTTTCGATTCTAATTGTCAATTCAAAGAAAATTACTCTTTCCCCATGGATGTAGCATTTTGCACCAACAAAGCCAATAACAGTTCTCACAAGTCACAAATAAAAAGCTCTCGTCTCAAAATCATTTCCCACATCTTTACGCATCACTTTATTGGTTTTATTATGTGGATTGCTTACTTCCATTTATTATATTTTCTTCACATCTTTACTAAACGTGTCCATCGCTTGTTCCAAATATGTTTGAATAAAGGAAGGAAAAGATTACACTCTAGATTGCTTGTTGAGTGTACTTGAGCATGTCTCCAAATGAATGTCCAATGTCGATGTACACTCAAACTCTTAGTGTTGGTATTTTTACATCCCTAGCTTGTATACTTTTTCAGATCAAGCATTACGTTGTTAAAAGGCTCTTGATTTGAACTGCCAAATATATCAAATTATTATTCACATTTTTATCTAATAATTTTGATGTAATTTTATTGTTTTTTCAATTTTTTCTTTTTTATGACATATTATTAAGTAGGGGTGTTTTTGTAATTTAAATATGATGGATAATGTGGTATTCGGGTTTTATTGGGAGGCTATCTAAAACTCTGTGATCACGCTGTTTTGGACACATCGTGATGAATGAGTTCTAGCTTTTATACTTTTTCTTCAAGTTTAACCCAAAGCTTCTTGATTGCAATTCATATTTTAGAGTTGCATGCCAAGAACATTCAAGTAGGATTGATCATCATTTCCTCTAATAGTGTTTCAAATCTTGGACCAAGGAACTTGTCTTTGTCTCAAGAGTTTAGATCTTAAGGCAATCTGTGTCTAACTCAATCCTTAGTGTTTACAAATTAGAGGTTCATATATCCAAATAGTTCCTAATTCCAATTCACGGATTTTCATATCATTTGATATCAGAGCATCTTTGGTATCATATCAAAATTCATCCATACTGAGTGTGCATGTAGGGTTTGTTTTTGCAAACATGTATGCTATACATTATCTCTTCCAACAGATGTTTACTTTTACATATGGAAGTTCAAAACTCCTTGCTTTTAGTAAAAAAAAAAAAAAAGGATAAAAACTGCATAAACTGATCTTTTAATGAAATCAAGAGTTAGCATTCTTTATTGGCCAATTTCAAGAGATCTGGTTGATAGATAAGTTAACTGTACCTTTTTTTGGAGCTTTTGTGCTTGCCTTCTATACCAGTAATTATCAAACTTTCCCTTGATAGTAATTGGAAGAATTTCAAGCGTTTAGTTGATAGTACATTATTATTGTGATCCTGTGCGCTTTCGTTGTTGAAAACATAAACATTTGTTTATCCGTTGACACAATTTTTTTTCCTCTTCTCACACAAAACACTATGTTTGCAGTGTAATGAACGAGCTAATCGAAAAATTCAACACTGCATATGACCGACATAGTCGAAGAGGTGGCCGAACAGTTTTTATATGAAACCCATCGCAGGCACCAACTGTACAACAGAAAGTTCAGGTATTTTGATGATAATGCTAGAATTTGAGTGGTTCTGGAAGGATGATGTAGGTTTTTTCCTTTCTGTTTTGCTTTTTTGCTCTTAGTTCCTATACATGGATGCTGTAGAAGTGAAAATGCTTTGAACATGCCTGAATTCCCCCCTCCCACCCACATATGCGTCTATTCGACCTATGGACAGCTTAGCAATAGAGGATGCAATATGTAA

mRNA sequence

CACACACATGTATATATAAACCTGCATGAGTAAACCGTAAAATTCCGAAGGCCACGGAAACTTTCCCTTAGAGCTTCTTTCAGAAAGTTTGGAGATTTGTGAAAACAGAGCATGGATGAATGAGAATTGAAGAACAACGAACTTGAAGATTTCAGCAAACAGTGTTAAATCTGCCCTTCTGTGTTCCATTCTCTCTGATTTTGAATTCTAGGTCAAGCAAATCTTGGATCATCGATCGCTTGTTCCTTGTTGCAATCGATCATGGCGTCGTCTGGCAGCGGATTGACATTCAAGCTACACCCCCTTGTGATTGTAAATATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCTTCCTTGACCTGCTCAGCTCCATCTCCTTGCGCCCTAAGTAATGGCGCCGATGTAGCCGATTCTGCGGACCCTTCTACTTCTCCTCCTGCACCTAGGGTTTTCGGTTGTGTTGTTGGAGTTCAGAGGGGCCGCACGGTTGAGATCTTCAACAGCTTCGAGCTTCTTTATGACCCCAAAACTCATTCACTGGACCGCCCCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCGGTTACGATTTACGAGAGTGAGCTACATGTTATTGAAGGGATCCCTCAGCTAATTTTTGTTCGCTCAAGTTACACTATTGAGACAGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCTACTCAACTGGCTGCTCACCTTGCGGGAATTCACAGTGCCATCAAAATGCTGAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTGATATTCCCTTAGAGAATTCCTTACTAAGACAAGTGTCAAGTTTGCTCAGAAGATTGCCAGTTACTGAATCTGGAAAGTTTCAAGACGATTTCTTGATGGAATATAATGACACAATGTTGATTACGTATCTAGCAATGTCCACTAATTGCTCAAGAAGTGAAAATGCTTTGAACATGCCTGAATTCCCCCCTCCCACCCACATATGCGTCTATTCGACCTATGGACAGCTTAGCAATAGAGGATGCAATATGTAA

Coding sequence (CDS)

ATGGCGTCGTCTGGCAGCGGATTGACATTCAAGCTACACCCCCTTGTGATTGTAAATATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCTTCCTTGACCTGCTCAGCTCCATCTCCTTGCGCCCTAAGTAATGGCGCCGATGTAGCCGATTCTGCGGACCCTTCTACTTCTCCTCCTGCACCTAGGGTTTTCGGTTGTGTTGTTGGAGTTCAGAGGGGCCGCACGGTTGAGATCTTCAACAGCTTCGAGCTTCTTTATGACCCCAAAACTCATTCACTGGACCGCCCCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGCCCTGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCGGTTACGATTTACGAGAGTGAGCTACATGTTATTGAAGGGATCCCTCAGCTAATTTTTGTTCGCTCAAGTTACACTATTGAGACAGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCTACTCAACTGGCTGCTCACCTTGCGGGAATTCACAGTGCCATCAAAATGCTGAACAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTGATATTCCCTTAGAGAATTCCTTACTAAGACAAGTGTCAAGTTTGCTCAGAAGATTGCCAGTTACTGAATCTGGAAAGTTTCAAGACGATTTCTTGATGGAATATAATGACACAATGTTGATTACGTATCTAGCAATGTCCACTAATTGCTCAAGAAGTGAAAATGCTTTGAACATGCCTGAATTCCCCCCTCCCACCCACATATGCGTCTATTCGACCTATGGACAGCTTAGCAATAGAGGATGCAATATGTAA

Protein sequence

MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRSENALNMPEFPPPTHICVYSTYGQLSNRGCNM

Homology

[Close]

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot
Match: Q8W206 (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=1 SV=2)

HSP 1 Score: 458.8 bits (1179), Expect = 5.4e-128
Identity = 235/303 (77.56%), Postives = 258/303 (85.15%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSP 62
           SS SGLTFKLHPLVIVNISDHYTRVK+Q+NPP+      S CA  +G++  ++       
Sbjct: 4   SSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPA------SICASGHGSNNGEAMFQQN-- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+GVQRGRTVEIFNSFELLYDP T +LDR FLEKKQELYKKVFP FYILGWY
Sbjct: 64  --PRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INH QKDLPVTIYESELHVI+GIPQLIF
Sbjct: 124 STGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
             +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+  L
Sbjct: 184 AHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNL 243

Query: 243 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRSE 302
            AMQ GD   +NS+LRQVSSLLRRLP  ES +FQD+FLMEYND +LITYLAM TNCS + 
Sbjct: 244 AAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNM 296

Query: 303 NAL 306
           N +
Sbjct: 304 NEM 296

[Close]

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot
Match: Q8W1P0 (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=1 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 4.3e-125
Identity = 225/301 (74.75%), Postives = 258/301 (85.71%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSP 62
           SS SGLTFKLHPLV++NISDH+TRVK+Q+NPP+      + CA  NG++ AD+       
Sbjct: 4   SSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPA------ASCATGNGSNNADAMLLQN-- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+G+QRGRTVEIFNSFEL++DP   +LDR FLEKKQELYKKVFP FY+LGWY
Sbjct: 64  --PRVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INHAQKDLPVTIYESE HVI+GIPQ IF
Sbjct: 124 STGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
           V +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+ ++
Sbjct: 184 VHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHI 243

Query: 243 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRSE 302
           +AMQ GD P ENS+LRQVSSLLR LP  ES KF ++FLMEYND +L++YLAM TNC+ + 
Sbjct: 244 VAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNM 294

Query: 303 N 304
           N
Sbjct: 304 N 294

[Close]

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot
Match: Q6ZKM2 (COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN6 PE=1 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 3.6e-124
Identity = 229/304 (75.33%), Postives = 256/304 (84.21%), Query Frame = 0


Query: 2   ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTS 61
           ASS SGLTFKLHPLVIVN+SDH+TRVK+Q       CS           D A SA     
Sbjct: 21  ASSSSGLTFKLHPLVIVNVSDHHTRVKAQ-----AACS----------GDGASSAAAGGQ 80

Query: 62  PPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGW 121
           P  PRVFGCV+GVQRGRTVEIFNSFEL+ DP + +LDR FLEKKQELYKKVFP FY+LGW
Sbjct: 81  P--PRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 140

Query: 122 YSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLI 181
           YSTGSD  ++DM IHKALMDINESPVY+LLNP+IN +QKDLPVTIYESELHVI+G PQLI
Sbjct: 141 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLI 200

Query: 182 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSY 241
           FVR++YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSR+R++H Y
Sbjct: 201 FVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQY 260

Query: 242 LLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRS 301
           L++MQ GD+PL+NSLLRQVSSL+RRLP  ES KFQDDFLMEYNDT+L+TYLAM TNCS +
Sbjct: 261 LVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSST 307

Query: 302 ENAL 306
            N L
Sbjct: 321 MNEL 307

[Close]

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot
Match: Q54C92 (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-58
Identity = 130/304 (42.76%), Postives = 184/304 (60.53%), Query Frame = 0


Query: 2   ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTS 61
           +++ SGL   LHPLV++NISDH+TR K Q N                     D+      
Sbjct: 20  SANSSGLEVDLHPLVLINISDHFTRTKVQSN-------------------YQDNC----- 79

Query: 62  PPAPRVFGCVVGVQRGRTVEIFNSFELLYD--PKTHSLDRPFLEKKQELYKKVFPHFYIL 121
               RV G ++GVQ GR VEI NSFE++Y    K   LD  +L KK   Y+++FP + +L
Sbjct: 80  ----RVIGVILGVQNGRNVEICNSFEMVYATVDKQLVLDIEYLRKK---YEQLFPLYDLL 139

Query: 122 GWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQ 181
           GWYSTGS   + D+ +HK + + NESP+Y++L+   +   KDLPV IYESELH++   P 
Sbjct: 140 GWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPT 199

Query: 182 LIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILH 241
            IFV++ Y I+T EAERI V+H+A + PS  GS  + L +HL  +H+AI MLN R++ L 
Sbjct: 200 TIFVKTPYKIQTGEAERIGVNHIAKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALS 259

Query: 242 SYLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 301
            YL A++   +P E ++LR+ SSL  +LP  ++  F+  +L EYND +L+TYLA  T  S
Sbjct: 260 DYLQAVKEKRLPYEQNILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTS 289

Query: 302 RSEN 304
            S N
Sbjct: 320 ASLN 289

[Close]

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot
Match: Q6NUC2 (COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.3e-52
Identity = 115/306 (37.58%), Postives = 174/306 (56.86%), Query Frame = 0


Query: 1   MASSGSG-LTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPS 60
           MA   +G +T  LHPLVI+NISDH+ R++SQ   P                         
Sbjct: 22  MAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPM------------------------ 81

Query: 61  TSPPAPRVFGCVVGVQRGRTVEIFNSFELL--YDPKTHSLDRPFLEKKQELYKKVFPHFY 120
                 +V G ++G Q GR +E+ NSFELL   + +  ++++ +   K+E +K+VF    
Sbjct: 82  ------QVIGALIGKQEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDME 141

Query: 121 ILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI 180
            LGWY+TG     SD+H+HK + +I ESP+++ LNP   H   DLPV++YES + ++ G 
Sbjct: 142 FLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHT--DLPVSVYESVIDIVNGE 201

Query: 181 PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRI 240
             ++    SYT+ T EAERI VDHVA +  +  G  +T +A HL   HSAIKML+SR+R+
Sbjct: 202 ATMLLAELSYTLATEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRL 261

Query: 241 LHSYLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTN 300
           +  Y+ A + G++P  + +LR+ S+L   LPV  + KF+ DF  + ND  L++YL   T 
Sbjct: 262 ILEYVRAAEGGEVPFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITK 294

Query: 301 CSRSEN 304
              + N
Sbjct: 322 TCNTMN 294

[Close]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL
Match: A0A1S3BI92 (COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 3.7e-164
Identity = 296/305 (97.05%), Postives = 297/305 (97.38%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGAD  DSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPP PRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 VMNEL 305

[Close]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL
Match: A0A0A0K584 (COP9 signalosome complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_7G184650 PE=3 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 9.1e-163
Identity = 293/300 (97.67%), Postives = 295/300 (98.33%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+CSA SPCALSNGAD  DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300

[Close]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL
Match: A0A6J1CEF0 (COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010462 PE=3 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 5.0e-161
Identity = 292/305 (95.74%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQ NPPSLT SAPSPCALSNGAD ADSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQTNPPSLTSSAPSPCALSNGADSADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SP APRV+GCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPSAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDT+LI+YLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTLLISYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 IMNEL 305

[Close]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL
Match: A0A6J1FDK7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.6e-159
Identity = 288/305 (94.43%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSAPSPCALSN ADVADS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGD+P+E+SLLRQVSSLLRRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 IMNEL 305

[Close]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL
Match: A0A6J1FKS7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157 PE=3 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 6.1e-159
Identity = 287/305 (94.10%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+ S+PSPCALSNGADVADSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSSSSPSPCALSNGADVADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQ+GRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQKGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLL+PSINHAQKDLPVTIYESELH+IEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLDPSINHAQKDLPVTIYESELHLIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSLLRRLPV ES KF+DDFL EY DTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVIESEKFRDDFLTEYTDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
           + N L
Sbjct: 301 AMNEL 305

[Close]

BLAST of Lsi02G017800 vs. NCBI nr
Match: XP_038897789.1 (COP9 signalosome complex subunit 6a-like [Benincasa hispida])

HSP 1 Score: 595.1 bits (1533), Expect = 3.7e-166
Identity = 300/305 (98.36%), Postives = 301/305 (98.69%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNG+DVADSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGSDVADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 VMNEL 305

[Close]

BLAST of Lsi02G017800 vs. NCBI nr
Match: XP_008447803.1 (PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo])

HSP 1 Score: 587.4 bits (1513), Expect = 7.6e-164
Identity = 296/305 (97.05%), Postives = 297/305 (97.38%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGAD  DSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPP PRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 VMNEL 305

[Close]

BLAST of Lsi02G017800 vs. NCBI nr
Match: XP_004139760.1 (COP9 signalosome complex subunit 6a [Cucumis sativus] >KAE8646028.1 hypothetical protein Csa_016543 [Cucumis sativus])

HSP 1 Score: 582.8 bits (1501), Expect = 1.9e-162
Identity = 294/305 (96.39%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+CSA SPCALSNGAD  DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 VMNEL 305

[Close]

BLAST of Lsi02G017800 vs. NCBI nr
Match: XP_022139602.1 (COP9 signalosome complex subunit 6a-like [Momordica charantia])

HSP 1 Score: 577.0 bits (1486), Expect = 1.0e-160
Identity = 292/305 (95.74%), Postives = 296/305 (97.05%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQ NPPSLT SAPSPCALSNGAD ADSADPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQTNPPSLTSSAPSPCALSNGADSADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SP APRV+GCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPSAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDT+LI+YLAMSTNCS 
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTLLISYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 IMNEL 305

[Close]

BLAST of Lsi02G017800 vs. NCBI nr
Match: XP_022936414.1 (COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_023536062.1 COP9 signalosome complex subunit 6a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570.9 bits (1470), Expect = 7.4e-159
Identity = 288/305 (94.43%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSAPSPCALSN ADVADS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGD+P+E+SLLRQVSSLLRRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCS 
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCSS 300

Query: 301 SENAL 306
             N L
Sbjct: 301 IMNEL 305

[Close]

BLAST of Lsi02G017800 vs. TAIR 10
Match: AT5G56280.1 (COP9 signalosome subunit 6A )

HSP 1 Score: 458.8 bits (1179), Expect = 3.8e-129
Identity = 235/303 (77.56%), Postives = 258/303 (85.15%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSP 62
           SS SGLTFKLHPLVIVNISDHYTRVK+Q+NPP+      S CA  +G++  ++       
Sbjct: 4   SSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPA------SICASGHGSNNGEAMFQQN-- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+GVQRGRTVEIFNSFELLYDP T +LDR FLEKKQELYKKVFP FYILGWY
Sbjct: 64  --PRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INH QKDLPVTIYESELHVI+GIPQLIF
Sbjct: 124 STGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
             +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+  L
Sbjct: 184 AHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNL 243

Query: 243 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRSE 302
            AMQ GD   +NS+LRQVSSLLRRLP  ES +FQD+FLMEYND +LITYLAM TNCS + 
Sbjct: 244 AAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNM 296

Query: 303 NAL 306
           N +
Sbjct: 304 NEM 296

[Close]

BLAST of Lsi02G017800 vs. TAIR 10
Match: AT4G26430.1 (COP9 signalosome subunit 6B )

HSP 1 Score: 449.1 bits (1154), Expect = 3.0e-126
Identity = 225/301 (74.75%), Postives = 258/301 (85.71%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSP 62
           SS SGLTFKLHPLV++NISDH+TRVK+Q+NPP+      + CA  NG++ AD+       
Sbjct: 4   SSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPA------ASCATGNGSNNADAMLLQN-- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+G+QRGRTVEIFNSFEL++DP   +LDR FLEKKQELYKKVFP FY+LGWY
Sbjct: 64  --PRVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INHAQKDLPVTIYESE HVI+GIPQ IF
Sbjct: 124 STGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
           V +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+ ++
Sbjct: 184 VHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHI 243

Query: 243 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRSE 302
           +AMQ GD P ENS+LRQVSSLLR LP  ES KF ++FLMEYND +L++YLAM TNC+ + 
Sbjct: 244 VAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNM 294

Query: 303 N 304
           N
Sbjct: 304 N 294

[Close]

BLAST of Lsi02G017800 vs. TAIR 10
Match: AT5G05780.1 (RP non-ATPase subunit 8A )

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-21
Identity = 75/291 (25.77%), Postives = 131/291 (45.02%), Query Frame = 0


Query: 12  LHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSPPAPRVFGCV 71
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDSSKRVVGVL 78

Query: 72  VGVQRGRTVEIFNSFELLY-----DPKTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGS 131
           +G      V++ NS+ + +     DP    LD  + E    ++K++    +++GWYSTG 
Sbjct: 79  LGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGP 138

Query: 132 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI---PQLIFV 191
              E+D+ +H        +PV V+++  +   +  +P   Y +   V E      Q +FV
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFV 198

Query: 192 RSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 251
             S  I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + SYL
Sbjct: 199 HVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRSYL 258

Query: 252 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLA 294
             +  G +PL + +L  +  +   LP     +    F ++ ND ML+ YL+
Sbjct: 259 DLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLS 271

[Close]

BLAST of Lsi02G017800 vs. TAIR 10
Match: AT5G05780.2 (RP non-ATPase subunit 8A )

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-20
Identity = 73/288 (25.35%), Postives = 129/288 (44.79%), Query Frame = 0


Query: 12  LHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSPPAPRVFGCV 71
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDSSKRVVGVL 78

Query: 72  VGVQRGRTVEIFNSFELLY-----DPKTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGS 131
           +G      V++ NS+ + +     DP    LD  + E    ++K++    +++GWYSTG 
Sbjct: 79  LGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGP 138

Query: 132 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSS 191
              E+D+ +H        +PV V+++  +   +  +P   Y +         Q +FV  S
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEENATQKSQKVFVHVS 198

Query: 192 YTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAM 251
             I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + SYL  +
Sbjct: 199 TEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRSYLDLV 258

Query: 252 QNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLA 294
             G +PL + +L  +  +   LP     +    F ++ ND ML+ YL+
Sbjct: 259 IEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLS 268

[Close]

BLAST of Lsi02G017800 vs. TAIR 10
Match: AT3G11270.1 (Mov34/MPN/PAD-1 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 8.5e-20
Identity = 74/291 (25.43%), Postives = 130/291 (44.67%), Query Frame = 0


Query: 12  LHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADVADSADPSTSPPAPRVFGCV 71
           +HPLV+++I DHY RV                                    + RV G +
Sbjct: 19  VHPLVLLSIVDHYNRV--------------------------------AKDTSKRVVGVL 78

Query: 72  VGVQRGRTVEIFNSFELLY-----DPKTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGS 131
           +G     TV++ NS+ + +     D     LD  + E    ++K++    +I+GWYSTG 
Sbjct: 79  LGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGP 138

Query: 132 DALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI---PQLIFV 191
              E+D+ +H        +PV V+++  +   +  +P   Y +   V E      Q +FV
Sbjct: 139 KLRENDLDVHALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQQVFV 198

Query: 192 RSSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 251
                I   E E I V+H+   +K +   + AT++ A L    +A+K L++R+R + +YL
Sbjct: 199 HVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL----TALKGLDARLREIRTYL 258

Query: 252 LAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLA 294
             +  G +PL + +L  +  +   LP     +    F ++ ND ML+ YL+
Sbjct: 259 DLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLS 271

The following BLAST results are available for this feature:

BLAST of Lsi02G017800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W206	5.4e-128	77.56	COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=...	[more]
Q8W1P0	4.3e-125	74.75	COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=...	[more]
Q6ZKM2	3.6e-124	75.33	COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q54C92	1.2e-58	42.76	COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 ...	[more]
Q6NUC2	6.3e-52	37.58	COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1	[more]

BLAST of Lsi02G017800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BI92	3.7e-164	97.05	COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 ...	[more]
A0A0A0K584	9.1e-163	97.67	COP9 signalosome complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_7G184650 PE...	[more]
A0A6J1CEF0	5.0e-161	95.74	COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC11101046...	[more]
A0A6J1FDK7	3.6e-159	94.43	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041...	[more]
A0A6J1FKS7	6.1e-159	94.10	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157...	[more]

BLAST of Lsi02G017800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897789.1	3.7e-166	98.36	COP9 signalosome complex subunit 6a-like [Benincasa hispida]	[more]
XP_008447803.1	7.6e-164	97.05	PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PR...	[more]
XP_004139760.1	1.9e-162	96.39	COP9 signalosome complex subunit 6a [Cucumis sativus] >KAE8646028.1 hypothetical...	[more]
XP_022139602.1	1.0e-160	95.74	COP9 signalosome complex subunit 6a-like [Momordica charantia]	[more]
XP_022936414.1	7.4e-159	94.43	COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 CO...	[more]

BLAST of Lsi02G017800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56280.1	3.8e-129	77.56	COP9 signalosome subunit 6A	[more]
AT4G26430.1	3.0e-126	74.75	COP9 signalosome subunit 6B	[more]
AT5G05780.1	7.7e-21	25.77	RP non-ATPase subunit 8A	[more]
AT5G05780.2	1.0e-20	25.35	RP non-ATPase subunit 8A	[more]
AT3G11270.1	8.5e-20	25.43	Mov34/MPN/PAD-1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	SMART	SM00232	pad1_6	coord: 9..172 e-value: 0.0024 score: 24.1
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 6..145 e-value: 3.1E-24 score: 85.2
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 1..207 e-value: 1.2E-60 score: 205.9
None	No IPR available	PANTHER	PTHR10540	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	coord: 2..305
None	No IPR available	PANTHER	PTHR10540:SF24	COP9 SIGNALOSOME COMPLEX SUBUNIT 6A	coord: 2..305
IPR024969	Rpn11/EIF3F, C-terminal	PFAM	PF13012	MitMem_reg	coord: 193..299 e-value: 6.4E-23 score: 81.3
IPR037518	MPN domain	PROSITE	PS50249	MPN	coord: 45..173 score: 18.256346
IPR033859	COP9 signalosome subunit 6	CDD	cd08063	MPN_CSN6	coord: 8..305 e-value: 1.2605E-128 score: 367.348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G017800.1	Lsi02G017800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
biological_process	GO:1990641	response to iron ion starvation
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0070122	isopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0005515	protein binding