Lsi02G016950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G016950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S23
Locationchr02: 22725043 .. 22727922 (-)
RNA-Seq ExpressionLsi02G016950
SyntenyLsi02G016950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAGTCAGTCTCCACACTCTGCTTTCGAATTAGTTGCAGCATCTTCCTTATCCGCCATCATGGGGTACGCATTTCTCTCTTCTCTGCGTCTTTCATCCATGGCGTTTTTATCTTCTTCGTCTTCGTCCAATTATGTTTTCTCGAAGAAGTTCATATTATTTGTTGAGATTTTATGAACAAACGGAAGTGGAGCTACTTTGAACTAGTGTTATTTCGTTCAGTTCTTTTGAAGACTATGTTTTTAAAACTAATAATACAATCGATTATCGAGGCATTAGTTGAATATCTCTCGCCAAGCGAAGTGTCTTGGTTTAAAACATGTACCGATACGTTGTAGTTGGTTTATCGATTAACCGATAGGCTCGGAGTTGTGGATAATCTGTTTTTTCCGATTCCTAAGCTTGAATACTTTTGTTGATAGTGTCTCTCTATTTCGAGATTTTTTTTTGTTTTTCCCCATTTCGACCAAGTTTCGATTCAGTTTTATTAGTTCTCATTACATTCAATTGTAGAGTTTCACACCAATGCCAATGAAGTATGAAGCTTTGTTGATGTGCTACTTTTTCTAATTTTCAACCTTCTTCAGCCTTATTTTCAATTTGAAACTTTCATTTCCAAAGAAATTGAATTTGAAAAAAACCACAAAAAGAACTATTTATGTTGAACCTCATCCAACTTTAAAATTGTCACGTCAAAATTGAATTGATGTGAGCTTTTTTCTTTTACCATCTAAAACTCTAATTTTCACATCATTTCACATTTCTTTTTTAAATTTATGCTCTTGCATCGACATGAAGAGCTGCAGATCGTGGCATCAAGGCAGGCCACTCTGCCCAATTAAAGTTTCATGAAACCTCGATATTTCGAACCTTGTCTATGACCTCTATACCTAACTTCTTGGGAGAGCTGTGAAGCTTAGATTTCTCATCCTCAACCTCAATAGGTAGATTCCGTACTTCACTTTGGCTGGGGCTTTTCTCTCTCTTTCTCCGATTATCTATTTTGTTGTGGAGTATATTTGGATAATAAGAGCGGAAATACCTTTCCAAACATTGATTCTTGTTTGACAGTTTCTATGTGTAATATCATAGGAAGACACAAAAATATTGATTCTTCATCTCATTGAATTTCATATGCATGCTTTCAATTTTAGTATGTAGATTACATCATTTTTCTTCACATATGCTGAGAGTCTCTAGCTCCATTCAAATTCTTGAAGGATACATTCTTAGCAAACCCTGCTATAGTAATGACTGAATTTTTGTATCATATATGCAGCATTTTAGTTGATCTGATCATGTAATATTACTAACTAATGACTGAATTTATTTTGTTGCAGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGGTGGGCAGATAAAGCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATGTAAGGCTATTAATTCTTATGGCTATTGTTGATGAATTTTGTTTTATATTTATATGTCTTGTGACAAAGCTGAATTTGCTAATACAGTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCCTCAATTATATTGAGGAAAATGTAAGTTAAATCTTATTTGCTTATGCAGTGAATGTTTATGTTTTTTTTGTTGACTTTCTTTGCTTTCTAACTAGTAAGTCTTGAATGAATGTTTTCTAAATCTTATCCATATTTTAAAAACTAGAAAACTGTTGCGATTTTCATTTTCAGTTGTAAAAATGTTTCAAAATAAGTAGAAGTATTATTTTTTTTTTTTTTAGTAAATAGGAATAGGTGATTCGAACCTCTAAGTCTAAGCAATGCTTTACTGTGGCTGTAAATGTATGTTTTTAGAATCAATTAAACAAGGTTTTCTAAAATAGGTTTCGGATATGATGAGGGTGTCCACCTATTGATCTATAGTACTATGGTTATTATGATTATTACTATGTATCGTTGTATTTTGAAGCATTGTAATTTGAGCATTAGTAAATGAAAAGTTCGTTTCCGTTTAAAAAAAAAAATTAGGTTTCTAGGTTTCTCAAATTCTGGCAGTGCTCTCTCTCTCTCTCTTGCTACAACACTCTTTAGACAATTTTTTTCTTTCTTTCAAAACAAATCTCTCTAACTTTATACTCTAAATTTTGTCTCTTAATTTTTTTTGTTTTCCCTATCTGTTCAAACCATCTCAACTTTTTTTGTTGGCACTTAAATAAAACTTCTCTTACTACAACACTCTTTAAACAAAGCTTATAATAATTACTCATAAAAAAAATTATATATCGATTATGCTGTCTTTTTAAAAATGTGTTGTTAAATTTGGATTTAAGTATGATTTGAAGTCTATTTTATTACAGGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTCGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCACTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAAACCTGTTTTTTCTTACCTTTAAATTATATTTTAAAATCAAATTTTGTTATACTATACACTGTTAATTTTTATTTTCAACGACAGGACCTGCCTTCTTATTTTTCTTTTACATTATATTATTAATTCTTCTTCAAACACCTTCCATGCTTAATGAAAATGCAAATCATGTTCAACAATTTATAAATTATAGTATTCAAAATTACTTCC

mRNA sequence

ATAAAATCCGTCCCGCAATTCCATTGCGATTAGGGTTTGAGTTACCGCCAGTCAGTCTCCACACTCTGCTTTCGAATTAGTTGCAGCATCTTCCTTATCCGCCATCATGGGAGCTGCAGATCGTGGCATCAAGGCAGGCCACTCTGCCCAATTAAAGTTTCATGAAACCTCGATATTTCGAACCTTGTCTATGACCTCTATACCTAACTTCTTGGGAGAGCTGTGAAGCTTAGATTTCTCATCCTCAACCTCAATAGGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGGTGGGCAGATAAAGCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCCTCAATTATATTGAGGAAAATGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTCGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCACTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAAACCTGTTTTTTCTTACCTTTAAATTATATTTTAAAATCAAATTTTGTTATACTATACACTGTTAATTTTTATTTTCAACGACAGGACCTGCCTTCTTATTTTTCTTTTACATTATATTATTAATTCTTCTTCAAACACCTTCCATGCTTAATGAAAATGCAAATCATGTTCAACAATTTATAAATTATAGTATTCAAAATTACTTCC

Coding sequence (CDS)

ATGGGAGCTGGTCGTAAGTTGAAGTCCCACCGTAGAAGGCAGAGGTGGGCAGATAAAGCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCCTTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCCTCAATTATATTGAGGAAAATGACGAGGTATTGATTGCGGGGTTTGGACGTAAGGGTCATGCTGTGGGAGATATTCCTGGTGTTCGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCACTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAA

Protein sequence

MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Homology
[Close]
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 5.5e-71
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 131/136 (96.32%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 250.8 bits (639), Expect = 9.1e-66
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-59
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 0 

Query: 5   RKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 64
           RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 70

Query: 65  RVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 124
           RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 71  RVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSL 130

Query: 125 LALFKEKKEKPRS 137
           LAL+K+KKE+PRS
Sbjct: 131 LALYKQKKERPRS 143

[Close]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match: A0A6J1JN26 (40S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match: A0A2G9GIG2 (40S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match: A0A6I9T358 (40S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match: A0A0A0KCM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match: A0A1S3B6Y1 (40S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. NCBI nr
Match: KAG6596454.1 (Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 612 MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 671

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 672 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 731

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 732 VSLLALFKEKKEKPRS 747

[Close]
BLAST of Lsi02G016950 vs. NCBI nr
Match: KAA0035301.1 (Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa] >KZV35083.1 hypothetical protein F511_04388 [Dorcoceras hygrometricum] >CAA3000696.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFY85390.1 ribosomal protein S12/S23 family protein [Actinidia rufa] >KAA0044033.1 Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 121 VSLLALFKEKKEKPRS 136

[Close]
BLAST of Lsi02G016950 vs. NCBI nr
Match: XP_004137806.1 (40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protein S23 [Cucumis sativus] >XP_004149560.1 40S ribosomal protein S23 [Cucumis sativus] >XP_008442648.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463567.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463898.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_010244979.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_010253521.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_011077380.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094704.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094750.1 40S ribosomal protein S23 [Sesamum indicum] >XP_015871640.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_015874365.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_019159119.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_019199308.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_022146292.1 40S ribosomal protein S23 [Momordica charantia] >XP_022846964.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022860588.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022868249.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022893103.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022923344.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022944535.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022951215.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022985542.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_022990481.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023005893.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023512024.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_023538819.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_028112674.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_028118234.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_031111005.1 40S ribosomal protein S23 [Ipomoea triloba] >XP_038890679.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038900543.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038903484.1 40S ribosomal protein S23 [Benincasa hispida] >KAG6602334.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010604.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG8376519.1 hypothetical protein BUALT_Bualt09G0071800 [Buddleja alternifolia] >PIN05081.1 40S ribosomal protein S23 [Handroanthus impetiginosus] >CAA3000695.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFZ11112.1 ribosomal protein S12/S23 family protein [Actinidia rufa])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. NCBI nr
Match: KAF5953829.1 (hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical protein TEA_010314 [Camellia sinensis var. sinensis])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 17  MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 76

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 77  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 136

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 137 VSLLALFKEKKEKPRS 152

[Close]
BLAST of Lsi02G016950 vs. NCBI nr
Match: KZV51763.1 (hypothetical protein F511_11451, partial [Dorcoceras hygrometricum] >PSR93034.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSR98196.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSS23725.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSS35002.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 5   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 64

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 65  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 124

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 125 VSLLALFKEKKEKPRS 140

[Close]
BLAST of Lsi02G016950 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-69
Identity = 131/136 (96.32%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 250.8 bits (639), Expect = 6.5e-67
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 0 

Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]
BLAST of Lsi02G016950 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Lsi02G016950 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Lsi02G016950 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:
BLAST of Lsi02G016950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462975.5e-7197.7940S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z91.2e-7097.7940S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492012.0e-6896.3240S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF359.1e-6694.1240S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ34.8e-5983.4640S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of Lsi02G016950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JN268.3e-70100.0040S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 ... [more]
A0A2G9GIG28.3e-70100.0040S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850... [more]
A0A6I9T3588.3e-70100.0040S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1[more]
A0A0A0KCM28.3e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1[more]
A0A1S3B6Y18.3e-70100.0040S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1[more]
BLAST of Lsi02G016950 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596454.11.7e-69100.00Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argy... [more]
KAA0035301.11.7e-69100.00Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa] >KZV35083.1 hypothetica... [more]
XP_004137806.11.7e-69100.0040S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protei... [more]
KAF5953829.11.7e-69100.00hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical p... [more]
KZV51763.11.7e-69100.00hypothetical protein F511_11451, partial [Dorcoceras hygrometricum] >PSR93034.1 ... [more]
BLAST of Lsi02G016950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.11.4e-6996.32Ribosomal protein S12/S23 family protein [more]
AT3G09680.16.5e-6794.12Ribosomal protein S12/S23 family protein [more]
ATCG00065.13.7e-0636.26ribosomal protein S12A [more]
ATCG01230.13.7e-0636.26ribosomal protein S12B [more]
ATCG00905.13.7e-0636.26ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 3..135
e-value: 1.1E-52
score: 175.4
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 20..133
e-value: 2.55977E-74
score: 214.826
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 10..136
e-value: 4.1E-33
score: 111.5
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 25..135
e-value: 5.7E-50
score: 167.7
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..136
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 53..60
NoneNo IPR availableGENE3D2.40.50.140coord: 19..136
e-value: 3.3E-47
score: 160.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR11652:SF59BNACNNG03140D PROTEINcoord: 1..136
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 14..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G016950.1Lsi02G016950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome