Lsi02G016490 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G016490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CASP-like protein
Location	chr02: 22291665 .. 22293299 (-)
RNA-Seq Expression	Lsi02G016490
Synteny	Lsi02G016490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGGATATGTTGGATTTGTGCTAAAATTAAACTTGGAAGAAGAAATTTTTAGAGTTAAAAGATGGCAGCTTCAAAGGGTTCAAGAATTGCTTCTCTTATATTGAGAATTTTAACTTTCATTCTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTGTTTTTAAAGGGACTGTAAGTGAATCAAAAGTCGAATTCAAAGATGTTTATTCCTATCGGTAAGTCGTCATCGTCTTCTTCTTCTTTTTTAATAATATGTTGGTGATTTTTTAAATAATTATGTAAATATTGTTTCTAATTTATTGATTTAAATGGCAGTTATTTGATAGCTGTGGCTGTTATAGGAGCTGCTTTGAGTCTTCTTCAAATTGCTCTCGCCATTTATTCTCTTGTTACCAAAAGCGAGGGTACTCCACTTTTCGATTTGTTCAGCGACAAGGTCACAACTCTTTTTATTCAATTTTACTTTCCATAAATTTTGGATTTTTTTTTAAATCTTTCCATTAATTTAATTTAATTTTGTTTTAGTAATTATTTGGATTTTAACGTCTCGGATATGAAAACAAAAAGAAAAGAAAAAGTAAAATCATAGAAGATATAAAAAAAAGAGAACAAGAAATGGAACAAAAGGAAAAGAGAGATTAAGGTGTCGTGAACGTTAAGATAAGGATTGGTTGCATTGACTTTATTTAATTTGTTTTGAAATATTTATATTCCATTAAGAGAAAAATAAAGCCCTTGAATTTTGATGAGTAAAGATGTAAAAGAGATCAGGGTATTAAAATTTGTGTGGAAGATATTGACGGTTTCCTAAATTTTTTTCACATGTCCATAGATTCGACACTGATTTTGATTTAAAGAGTTAATCGATATTTGGATTAATTATATGGTAAGAAAATTAATGAAAATGTAAATATTATATAAAATAATAAGCATTTTTGACTTATTGACACAACGTAAATTTTCGTTCAATATCTTGTTTTTATAATTTTTGAAAAAATTAATATCTATAGATATTTTTATGGACAATTTTGTAAAATTCACATTTTTCATTTGGGTGGAGATCGCTAAATTTGTAAAATTTTAGAAACTAATGAACAGAAACAATTTTCACTTGAAAATGTTTGATTTTTACGCTTTACAAAAAAATATTTTAAAATTTATAAAGGTTAATTAATCCATTTCAAATAATTTCTCATCTATTTTATCTCTACTTCATTAAAAATTTCCAACTAGTTATTCCGGTTGAGCATTCCACATTAAAAATATGTTCGGAAACCTTTTGATCTATTTCCGTCTCGCTTATGAACATCTCTAGTTTTGATATTTTATATTTTTGTATGCACAGTTGTTATCGTACCTTCTAATATCGGCTGCCTCGGCGGGATTAGGCGCGGGAATCGACCTGAGAACGAATTTTAAAGAGCTGGTTGGCAATTTTTTCAACTCATTTTTTGACAAGGGCAGTGCTGCAGCTGCTATTCTTCTCCTTGCATTTTTTTGCGCTGCCATTGTTTCAATTCTCTCTTCCTTGGCTCTCATAAGAAAGCCTTAATTAAGAATTTCTTCTTATTTCAAAACTTCTCTATGATCTTAAGCTGTTTAATTAATTGGTTTATGTTTAG

mRNA sequence

CAAAAGGATATGTTGGATTTGTGCTAAAATTAAACTTGGAAGAAGAAATTTTTAGAGTTAAAAGATGGCAGCTTCAAAGGGTTCAAGAATTGCTTCTCTTATATTGAGAATTTTAACTTTCATTCTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTGTTTTTAAAGGGACTGTAAGTGAATCAAAAGTCGAATTCAAAGATGTTTATTCCTATCGTTATTTGATAGCTGTGGCTGTTATAGGAGCTGCTTTGAGTCTTCTTCAAATTGCTCTCGCCATTTATTCTCTTGTTACCAAAAGCGAGGGTACTCCACTTTTCGATTTGTTCAGCGACAAGTTGTTATCGTACCTTCTAATATCGGCTGCCTCGGCGGGATTAGGCGCGGGAATCGACCTGAGAACGAATTTTAAAGAGCTGGTTGGCAATTTTTTCAACTCATTTTTTGACAAGGGCAGTGCTGCAGCTGCTATTCTTCTCCTTGCATTTTTTTGCGCTGCCATTGTTTCAATTCTCTCTTCCTTGGCTCTCATAAGAAAGCCTTAATTAAGAATTTCTTCTTATTTCAAAACTTCTCTATGATCTTAAGCTGTTTAATTAATTGGTTTATGTTTAG

Coding sequence (CDS)

ATGGCAGCTTCAAAGGGTTCAAGAATTGCTTCTCTTATATTGAGAATTTTAACTTTCATTCTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTGTTTTTAAAGGGACTGTAAGTGAATCAAAAGTCGAATTCAAAGATGTTTATTCCTATCGTTATTTGATAGCTGTGGCTGTTATAGGAGCTGCTTTGAGTCTTCTTCAAATTGCTCTCGCCATTTATTCTCTTGTTACCAAAAGCGAGGGTACTCCACTTTTCGATTTGTTCAGCGACAAGTTGTTATCGTACCTTCTAATATCGGCTGCCTCGGCGGGATTAGGCGCGGGAATCGACCTGAGAACGAATTTTAAAGAGCTGGTTGGCAATTTTTTCAACTCATTTTTTGACAAGGGCAGTGCTGCAGCTGCTATTCTTCTCCTTGCATTTTTTTGCGCTGCCATTGTTTCAATTCTCTCTTCCTTGGCTCTCATAAGAAAGCCTTAA

Protein sequence

MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP

Homology

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BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot
Match: B9SXY8 (CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 4   SKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVI 63
           S  SR+A+LILRILTFI +  SL+I+ TN+ T+    V E KV FKDVY+YRY++A  VI
Sbjct: 7   SLASRMAALILRILTFIFLIASLVILTTNTATLELDLV-EVKVHFKDVYAYRYMLATIVI 66

Query: 64  GAALSLLQIALAIYSLVT-----KSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTN 123
           G A ++LQIA  +Y + T       +G   FD F DK++SY+L++ A+AG  +  D++  
Sbjct: 67  GLAYTVLQIAFTLYYVATGNRMMSGDGNLAFDFFGDKVISYILVTGAAAGFASTKDIKPV 126

Query: 124 FKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLAL 160
           F       F++F +KG A+A++LL+ F C A++S+ SS AL
Sbjct: 127 FSG--SGDFDAFINKGYASASLLLIGFVCTAVLSVFSSYAL 164

[Close]

BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot
Match: B9NBE5 (CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-23
Identity = 70/167 (41.92%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 2   AASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVA 61
           A S  SR+ +L LR+LTF  + +SL+I+ TN+ T+  G + E KV  KD YSYRY++A  
Sbjct: 14  APSMVSRMTALFLRVLTFAFLMVSLVIMTTNTGTIEIG-IDEFKVRSKDFYSYRYMLAAI 73

Query: 62  VIGAALSLLQIALAIYSL------VTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDL 121
             G   ++LQIAL +  +       T  +G  +FD + DK++SY+L + A+A  GA  +L
Sbjct: 74  AFGLTYTILQIALTLNHISKRNGAQTSGDGNLVFDFYGDKVVSYILATGAAAAFGATKEL 133

Query: 122 RTNFKELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK 163
           +T    L G   + FF+KG A+A++LLL F C AI+S+ SS AL +K
Sbjct: 134 KTQLAGLGG---DKFFNKGYASASLLLLGFVCTAILSVFSSYALPKK 176

[Close]

BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot
Match: A1XGB4 (CASP-like protein PIMP1 OS=Capsicum annuum OX=4072 GN=PIMP1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 11  SLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAALSLL 70
           SLI+RILT I + IS ++IATN++TV      + K++FKD Y+YRYLIA  +IG A +LL
Sbjct: 14  SLIVRILTLICLLISFIVIATNNQTV-STVAGDVKIKFKDFYAYRYLIATVIIGMAYTLL 73

Query: 71  QIALAIYSLVTKS----EGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELVG-N 130
           QIA +I  L T +    EG  LFD + DK +SY L++ A+A  G   DL    K+L G +
Sbjct: 74  QIAFSISLLTTGNRIGGEGFLLFDFYGDKFISYFLVTGAAASFGMTQDL----KQLEGSD 133

Query: 131 FFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK 163
            ++ F +  +AAA++ L+ FF A   SI SS  L ++
Sbjct: 134 NYSKFLNTSNAAASLCLIGFFFAVASSIFSSYNLPKR 165

[Close]

BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot
Match: Q56X75 (CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 61/161 (37.89%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 8   RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAAL 67
           ++  L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIV-SQGSALKFHFKDVYAYRYMLSAAVIGLVY 73

Query: 68  SLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELVG- 127
           +++Q+   I    T  K+      D + DKL+SYL+ + ++AG G   DL+  F  LV  
Sbjct: 74  AVIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVAL 133

Query: 128 ---NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK 163
              +  + FF KG A+A++LL AF C A++S+ SS A+ ++
Sbjct: 134 DSTDPVDKFFSKGYASASLLLFAFICLAVLSVFSSFAMAKR 173

[Close]

BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot
Match: D7LD59 (CASP-like protein 4D2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_903204 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-18
Identity = 60/161 (37.27%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 8   RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAAL 67
           +++ L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVSLLLLRVLTGVFLVIALIILSTNSVTIV-SQGSALKFHFKDVYAYRYMLSAAVIGLLY 73

Query: 68  SLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELVG- 127
           +++Q+   I    T  K+      D + DKL+SYL+ + ++AG G   DL+  F  LV  
Sbjct: 74  AVIQLFFTISEFATGMKNPFNYQLDFYGDKLISYLVATGSAAGFGVSKDLKDAFIALVAL 133

Query: 128 ---NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK 163
              +  + FF +G A+A++LL +F C A++S+ SSLA+ ++
Sbjct: 134 DSTDPVDKFFSRGYASASLLLFSFICLAVLSVFSSLAIAKR 173

[Close]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL
Match: A0A6J1C1A4 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006513 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.3e-63
Identity = 137/163 (84.05%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           MAASKGSRIASLILRILTF+LIFISLLIIATNSKTV KGT +E+KVEFKDVYSYRYL A 
Sbjct: 1   MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAA 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
           AVIGAALSLLQIAL +Y +VTKS+GTP FD+FSDKLL+YLL+S ASAGLGAGIDLR+N+K
Sbjct: 61  AVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKLLTYLLLSGASAGLGAGIDLRSNYK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           +LVGN FNSFFDKGSA+AAILLLAF C+A+VSILSSLAL+RKP
Sbjct: 121 DLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP 163

[Close]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL
Match: A0A6J1HET3 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463525 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.0e-55
Identity = 125/163 (76.69%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           MAASKGSRIASLILRILTFILIFISL+I ATNSKT+ KGT +E+K+EFK+VYSYRYLIA 
Sbjct: 1   MAASKGSRIASLILRILTFILIFISLIINATNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
           AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYLL+S++SA LGAGID+R N K
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDMRANLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           EL G  F+SFFD+GS AAA+L +AF CAA+VSILS+LALIRKP
Sbjct: 121 ELFGTLFDSFFDQGSGAAAVLFIAFVCAAVVSILSALALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL
Match: A0A6J1JJD2 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487466 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           M  SKGSRIASLILRILTFILIFISLLI ATNSKT+ KG  +E+K +FKDVYSYRYLI+ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLLINATNSKTLNKGAENETKFKFKDVYSYRYLIST 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
            +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYLL+S ASAGLGAGIDLR   K
Sbjct: 61  TIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           ELVGN  NSF DKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Sbjct: 121 ELVGNLLNSFLDKGNASAAVLLLAFICAAVVSILSSLALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL
Match: A0A6J1GRM4 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456492 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.6e-54
Identity = 127/163 (77.91%), Postives = 140/163 (85.89%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           M  SKGSRIASLILRILTFILIFISL+I ATNSKT  KG  +E+  +FKDVYSYRYLI+ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLIINATNSKTFNKGAENETTFKFKDVYSYRYLIST 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
            VIGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYLL+S ASAGLGAGIDLR   K
Sbjct: 61  TVIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           ELVGN  NSFFDKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Sbjct: 121 ELVGNLLNSFFDKGNASAAVLLLAFICAAVVSILSSLALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL
Match: A0A6J1JSF8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487423 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.7e-53
Identity = 123/163 (75.46%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           MAASKGSRIA+LILRILT ILIFISL+I A+NSKT+ KGT +E+K+EFK+VYSYRYLIA 
Sbjct: 1   MAASKGSRIATLILRILTLILIFISLIINASNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
           AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYLL+S++SA LGAGID R N K
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDTRANLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           EL G  F+SFFD+GS AAA+LL+AF CAA+VSILS+LALIRKP
Sbjct: 121 ELFGTLFDSFFDQGSGAAAVLLIAFICAAVVSILSALALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. NCBI nr
Match: XP_038877614.1 (CASP-like protein 4D1 [Benincasa hispida])

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 3   ASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAV 62
           ASKGSRIASLILRILTFILIF++LLIIATNSKTV +GTV+E+K+EFKDV SYRYL+AVAV
Sbjct: 2   ASKGSRIASLILRILTFILIFVALLIIATNSKTVLEGTVNETKIEFKDVNSYRYLVAVAV 61

Query: 63  IGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKEL 122
           IG ALSLLQIA  IY LVTK +GTPLFDLFSDKLLSYLL+S ASAGLGAGID+R NFKEL
Sbjct: 62  IGGALSLLQIAFTIYHLVTKGDGTPLFDLFSDKLLSYLLLSGASAGLGAGIDMRVNFKEL 121

Query: 123 VGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           VGNFFNSFFDKGSAAAAILLLAF CAAIVSILSSLALIRKP
Sbjct: 122 VGNFFNSFFDKGSAAAAILLLAFICAAIVSILSSLALIRKP 162

[Close]

BLAST of Lsi02G016490 vs. NCBI nr
Match: XP_022134193.1 (CASP-like protein 4D1 [Momordica charantia])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 137/163 (84.05%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           MAASKGSRIASLILRILTF+LIFISLLIIATNSKTV KGT +E+KVEFKDVYSYRYL A 
Sbjct: 1   MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAA 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
           AVIGAALSLLQIAL +Y +VTKS+GTP FD+FSDKLL+YLL+S ASAGLGAGIDLR+N+K
Sbjct: 61  AVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKLLTYLLLSGASAGLGAGIDLRSNYK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           +LVGN FNSFFDKGSA+AAILLLAF C+A+VSILSSLAL+RKP
Sbjct: 121 DLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP 163

[Close]

BLAST of Lsi02G016490 vs. NCBI nr
Match: XP_022963262.1 (CASP-like protein 4D1 [Cucurbita moschata] >KAG6602371.1 CASP-like protein 4D1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 125/163 (76.69%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           MAASKGSRIASLILRILTFILIFISL+I ATNSKT+ KGT +E+K+EFK+VYSYRYLIA 
Sbjct: 1   MAASKGSRIASLILRILTFILIFISLIINATNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
           AVIG  LSL+QI L+IY +VTKSEGTPLF LFSD LLSYLL+S++SA LGAGID+R N K
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDMRANLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           EL G  F+SFFD+GS AAA+L +AF CAA+VSILS+LALIRKP
Sbjct: 121 ELFGTLFDSFFDQGSGAAAVLFIAFVCAAVVSILSALALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. NCBI nr
Match: XP_023525049.1 (CASP-like protein 4D1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           M  SKGSRIASLILRILTFILIFISL+I ATNSKT  KG  +E+K +FKDVYSYRYLI+ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLIINATNSKTFNKGAQNETKFKFKDVYSYRYLIST 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
            +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYLL+S ASAGLGAGIDLR   K
Sbjct: 61  MIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           ELVGN  NSFFDKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Sbjct: 121 ELVGNLLNSFFDKGNASAAVLLLAFICAAVVSILSSLALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. NCBI nr
Match: XP_022990642.1 (CASP-like protein 4D1 [Cucurbita maxima])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MAASKGSRIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAV 60
           M  SKGSRIASLILRILTFILIFISLLI ATNSKT+ KG  +E+K +FKDVYSYRYLI+ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLLINATNSKTLNKGAENETKFKFKDVYSYRYLIST 60

Query: 61  AVIGAALSLLQIALAIYSLVTKSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFK 120
            +IGA LSLLQIAL IY++VTKS  T LFD+FSDKLLSYLL+S ASAGLGAGIDLR   K
Sbjct: 61  TIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

Query: 121 ELVGNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
           ELVGN  NSF DKG+A+AA+LLLAF CAA+VSILSSLALIRKP
Sbjct: 121 ELVGNLLNSFLDKGNASAAVLLLAFICAAVVSILSSLALIRKP 163

[Close]

BLAST of Lsi02G016490 vs. TAIR 10
Match: AT2G39518.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 61/161 (37.89%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 8   RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAAL 67
           ++  L+LR+LT + + I+L+I++TNS T+     S  K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIV-SQGSALKFHFKDVYAYRYMLSAAVIGLVY 73

Query: 68  SLLQIALAIYSLVT--KSEGTPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELVG- 127
           +++Q+   I    T  K+      D + DKL+SYL+ + ++AG G   DL+  F  LV  
Sbjct: 74  AVIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVAL 133

Query: 128 ---NFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRK 163
              +  + FF KG A+A++LL AF C A++S+ SS A+ ++
Sbjct: 134 DSTDPVDKFFSKGYASASLLLFAFICLAVLSVFSSFAMAKR 173

[Close]

BLAST of Lsi02G016490 vs. TAIR 10
Match: AT2G39530.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 61/162 (37.65%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 8   RIASLILRILTFILIFISLLIIATNSKTVFKGTVSESKVEFKDVYSYRYLIAVAVIGAAL 67
           R   L+LR+LT   + I++++I+TN+ T+   + S  K+ F DVY+YRY+++ AVIG   
Sbjct: 14  RTVLLLLRVLTAAFLLITVVLISTNTVTLEISSTS-IKLPFNDVYAYRYMLSAAVIGLVY 73

Query: 68  SLLQIALAIYSLVTKSEG--TPLFDLFSDKLLSYLLISAASAGLGAGIDLRTNFKELV-- 127
           +++Q+ L I    T      T  FD + DK++SYLL + ++AG G   DL+  +  L+  
Sbjct: 74  AVVQLFLTISQFATGKTHPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDTYIALIEF 133

Query: 128 --GNFFNSFFDKGSAAAAILLLAFFCAAIVSILSSLALIRKP 164
              +  + FF KG A+A++LL AF   A++S+ SSLAL ++P
Sbjct: 134 DSTDPVDKFFSKGYASASLLLFAFVSLAVLSVFSSLALSKRP 174

The following BLAST results are available for this feature:

BLAST of Lsi02G016490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SXY8	1.2e-24	44.72	CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1	[more]
B9NBE5	8.7e-23	41.92	CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 S...	[more]
A1XGB4	1.5e-19	43.95	CASP-like protein PIMP1 OS=Capsicum annuum OX=4072 GN=PIMP1 PE=2 SV=1	[more]
Q56X75	1.3e-18	37.89	CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1	[more]
D7LD59	2.2e-18	37.27	CASP-like protein 4D2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT...	[more]

BLAST of Lsi02G016490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1A4	5.3e-63	84.05	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006513 PE=3 SV=1	[more]
A0A6J1HET3	9.0e-55	76.69	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463525 PE=3 SV=1	[more]
A0A6J1JJD2	1.2e-54	77.91	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487466 PE=3 SV=1	[more]
A0A6J1GRM4	2.6e-54	77.91	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456492 PE=3 SV=1	[more]
A0A6J1JSF8	1.7e-53	75.46	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487423 PE=3 SV=1	[more]

BLAST of Lsi02G016490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877614.1	1.7e-63	87.58	CASP-like protein 4D1 [Benincasa hispida]	[more]
XP_022134193.1	1.1e-62	84.05	CASP-like protein 4D1 [Momordica charantia]	[more]
XP_022963262.1	1.9e-54	76.69	CASP-like protein 4D1 [Cucurbita moschata] >KAG6602371.1 CASP-like protein 4D1, ...	[more]
XP_023525049.1	1.9e-54	77.91	CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]	[more]
XP_022990642.1	2.4e-54	77.91	CASP-like protein 4D1 [Cucurbita maxima]	[more]

BLAST of Lsi02G016490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39518.1	9.3e-20	37.89	Uncharacterised protein family (UPF0497)	[more]
AT2G39530.1	1.3e-18	37.65	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 6..147 e-value: 2.4E-25 score: 89.1
None	No IPR available	PANTHER	PTHR11615:SF148	CASP-LIKE PROTEIN 4D2	coord: 4..162
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 4..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016490.1	Lsi02G016490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding