Lsi02G016480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G016480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CASP-like protein
Location	chr02: 22284485 .. 22288024 (-)
RNA-Seq Expression	Lsi02G016480
Synteny	Lsi02G016480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAAAGATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGGTAAGTCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAATAATGTTTTGGTGATTTTTTAGATAATTATGTAAATATTTGTTTTTCTAATTTATTGACTTAAATGGTCAGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGTCTTCTTCAAATTGTTCTCGCCATTTACTCTCTCCTTACCAAAGGCGAGGGAACTCCACTTTTCAATTTGTTCAGCGATAAGGTCACACTCTTTTTATTCAAGTAGTTGGAAGACACGTGTAATGCATTTTAATTGTGATTCAATTGTGTTCTTTATCATAAAATTTTGATTCAATATTCATTGAATGTTATTAGTAAATATTTCACATGAAATGAAGTAATTTTAAAATAGTACTTTAAATCATAAGAATATGAGATATTTTGGAAGTTATTCGAAATTTTTGGGAAGTTTTTTAAAAGAAAAAAATTATTTTTAAATATGAACATAATTATATAATTGAATTTAAATTTTAAATAGTTCACATGAAATTTAAAAGTATAAAAAGAGAAAAAATATATAGAAATAGATGAATGAATAAAATTAAAATAATGTAATTGGAATAAAAATGAGAACTTAATTATTATTTCATAGGTTAATTCTTTGATACATCCATAGTATTAAATTTCCATCGATATGTCGAAATTTCCATCAATATTTCCATGTTTTCATGAGTTCGAAATCGATTTGAGGGGTGAATCGATATTTTCATTATATTGTAAAAAAATCTACGAAACACGAAAAATAAGTTTCAAAATGCTACTAATATAAATATAATATAAATAATAGACCTGTTTACTTATTTGAAAATAATAAAATGTTTATTTACTATTTTAAATTTAATTTTTAAATTTTTTGTTTTAAATTTTTTTCAGAAATATTCATCGAAATCGATATTTTGTTGATATTTCCATCGAAATTTCGGTAAATTTAAGACCTCGATGTTTCCATCGATATGGATATTTTAAACTTTGGATACATCCTTCTTAGAAGATAATAATTTTTTTTTTGGAGGAAAAAAAAAAGAATGAAAGGAAAATGTTTGGAAATAAAAGGAATTTTTTTCAAATGAATTTGGTAGTCTTCTGAAAAAATAAGATTGTTTGTTTTTTTAATAAAAACAAAAAAATAAAATCTCTCATCAAATTCTTTTTTTTTCATGTATTTGATTTAAAAAGTCTATTATAATTATTTAATATATGTATCTAAAATCCCAAATAATAAAATATCTATAAAATTATAAGGGTATTTGATTTTATAATTAATTCAATAAAAGTTAAAAAGAACTTAATGTTTCTTGTGGAGAACAAATACATGAAAAAAGTAATGTGTTCTAACAACAAATACATGAAAGAAGTAATGTGATCTAAACAATAAATAATTAGATAATGGCTAGCTAGTAATTATTGATTTAAATTAGTTTTAAAAAAATATTTTTTCCCTAAATTAAACACTCCTTCCTTTTAGATTTTTTTTAATATATAAAGCAACAAATAAGTCATTCCAAAAAAAAAAAAAATTCAAAAACATAAAATATAAGTATTTTTAAATCCAATCCAATTGTTTCATTTACGTAACAAAATCAAACTTGAAGTTTGAGCATCCTTTTATATTTTCAGTTGATGCCACTATGTGTTGTATTCACAAGAGATTTAATTATTCTTTTTTTTAAAAAAAATATTCGTTGAAGGAACAAAAAAAAAAAAAAGAAAAAAAAATACAAACATTGACAGAAATATCTTAATTTCGGAGATCAAACTATATTATATTCAATTTTAATTTATATTTATTTTAGTTCTTAGTCTATTTTTTAAAGAAAAATATTGCTAATCAAATAAATCTCCGATCTAATTAAGGTTTAACAAACAACATCTCTCATTGATGTGTCTAATTTCAATGGTTAGCAAGATAAACATTTTAACTTAATTTTTTTTATTTAAAAAAAGATACAAATGAAATATTCAACAAAATAATCAATTTTCTTAACGATCAAGAAGTAACAGTGAGATGATTCCACAATGGATTTGTGTAAGTAAGGAAACTGCAATTATATTGTAAGGAAATCAATGAATCATAAAAAGAACAAATTCCAAAACCCTTAACTCAATTGATGTCAATTCAAAGTGAAGAATTAGAATTGAATTACCTTTTGATTGAAGACCAAGAGATAAAGGAGAACTAATTTATTAACTCCAAGTTTGAACACTTCACAAACAAGGTGATCAGACTTATTTGAATGTTCTTGGTATGCAATCATGAATTCAAGAATTGTAAAAAATGATGATAAGACTTTGTTATCTACCAAAAAAAATTTATTCAATAAAATCCAAAAACTCAAGACATCAAAAACCAACGTATTGTGTTCGCTTTTCCCCTTTAAAACACATCCTACTTAATCAAAGAGACTTAAAAAGTCCATTCTATCCCTACTAAAAACTCAAATAAAACATATAGGGATACAATAATGAAAATACCAAAAAAAAAAATCTATTTGCAAATATTAAAAAATGCGAATTAAAAATTTAACAAAGTGCAATTGGTTTCATGTTGTAGCATTATTTGAAGCCAATTATAGAACTTCTGATTAGATGTTGCTGCTTGAATCTCCTAAATTGAGTTCATCTCCATTTGTATGTGAGAATTCATTGCTAACTGCAACTTCTTGGCATTTGAACATGTGATTAGTCGCAGAGGTAACACAAGGGCTTCCTAGTTCATATCAACTAATGTGAATATTATATAAAATAATAAGCTTTTTAACTTATTAACAAAATGTAAATTTTTATTAAATATTATTTATGTTTTTTTTTAATAATTTTTCAATGTAAAATTGAGACTATGGAGATTGCAAATTTGTAAAATTTGAGAAACTAATGAACAAATACTCTACTTGGTAATGTTTGATTTTTTACATTTTACAAAAGTATTACAAATTTACAAATGCTAATTAATGTATATCTTATAATTTATGGTCCATTTTACCTCCAATGCATTACAAATTTTCAACTAGTTCATATCGAAGATTCCACATTAAAAATATGAAGAAATCTCACAATTTCTATAAGATATATATATTACTTTTCTTATTATTGTCGATCGGTTTTGATGTTTTGTGTTTCTTTATGTGCAGTTCTTATCGTACCTACTATTATCGGGCGCCTCGGCGGGATTAGGCGCAGGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCT

mRNA sequence

GGGTAAAGATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCT

Coding sequence (CDS)

ATGGCAGTCTCAAAGGGTTCAAGAATGGCTACTCTTATATTGAGAATTTTAACCTTTATTTTGATCTTTATTTCTCTCTTAATCATCGCCACCAATTCCAAAACTCTTTTTAAAGGGACTTTAGGTGAAACAAAAGTTGAGTTCAAAGATGTTTATTCCTATCGTTATGTGGTAGCTGTGGCGGTTATAGGAGCTACTTTGAGGATCGATATGAGAGCGAATTTGAAAGTGCTGGCTGGCAATGTTTTGAACTCATTTTTCGACAAGGGAAGTGCTGCAGCTGCTATTCTTCTTGTTGCATTTGTTTGTGCTGCCATGGTTTCAATTCTCTCTTCCTTGGCTCTCATCAGAAAGCCT

Protein sequence

MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATLRIDMRANLKVLAGNVLNSFFDKGSAAAAILLVAFVCAAMVSILSSLALIRKP

Homology

[Close]

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot
Match: B9SXY8 (CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 58/159 (36.48%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 4   SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVI 63
           S  SRMA LILRILTFI +  SL+I+ TN+ TL +  L E KV FKDVY+YRY++A  VI
Sbjct: 7   SLASRMAALILRILTFIFLIASLVILTTNTATL-ELDLVEVKVHFKDVYAYRYMLATIVI 66

Query: 64  G-ATLRIDMRANLKVLA---------GNV------------------------------- 116
           G A   + +   L  +A         GN+                               
Sbjct: 67  GLAYTVLQIAFTLYYVATGNRMMSGDGNLAFDFFGDKVISYILVTGAAAGFASTKDIKPV 126

[Close]

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot
Match: B9NBE5 (CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 57/164 (34.76%), Postives = 79/164 (48.17%), Query Frame = 0


Query: 2   AVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVA 61
           A S  SRM  L LR+LTF  + +SL+I+ TN+ T+  G + E KV  KD YSYRY++A  
Sbjct: 14  APSMVSRMTALFLRVLTFAFLMVSLVIMTTNTGTIEIG-IDEFKVRSKDFYSYRYMLAAI 73

Query: 62  VIGAT---LRIDMRAN-------------------------------------------L 119
             G T   L+I +  N                                           L
Sbjct: 74  AFGLTYTILQIALTLNHISKRNGAQTSGDGNLVFDFYGDKVVSYILATGAAAAFGATKEL 133

[Close]

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot
Match: Q2R2T4 (CASP-like protein 4D1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0549625 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 10 ATLILRILTFILIFISLLIIATNSKTL-FKGTLGETKVEFKDVYSYRYVVAVAVIG 65
          A L LR+LT  L+  SL +IA +  TL F G L   K+ FKDVY+YRYV+A+AVIG
Sbjct: 12 AVLALRLLTLALLAASLAVIAADKLTLDFGGGLPPKKITFKDVYAYRYVLAIAVIG 67

[Close]

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot
Match: Q56X75 (CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 44/161 (27.33%), Postives = 74/161 (45.96%), Query Frame = 0


Query: 8   RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATL 67
           ++  L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIVSQG-SALKFHFKDVYAYRYMLSAAVIGLVY 73

Query: 68  RI--------------------------DMRANLKVLAGNV------------------- 119
            +                          D   +  V  G+                    
Sbjct: 74  AVIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVAL 133

[Close]

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot
Match: D7LD59 (CASP-like protein 4D2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_903204 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.6e-05
Identity = 43/161 (26.71%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 8   RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATL 67
           +++ L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVSLLLLRVLTGVFLVIALIILSTNSVTIVSQG-SALKFHFKDVYAYRYMLSAAVIGLLY 73

Query: 68  RI--------------------------DMRANLKVLAGNV------------------- 119
            +                          D   +  V  G+                    
Sbjct: 74  AVIQLFFTISEFATGMKNPFNYQLDFYGDKLISYLVATGSAAGFGVSKDLKDAFIALVAL 133

[Close]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL
Match: A0A6J1C1A4 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006513 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 92/163 (56.44%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           MA SKGSR+A+LILRILTF+LIFISLLIIATNSKT+ KGT  E KVEFKDVYSYRY+ A 
Sbjct: 1   MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAA 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
           AVIGA L                                             ID+R+N K
Sbjct: 61  AVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKLLTYLLLSGASAGLGAGIDLRSNYK 120

[Close]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL
Match: A0A6J1HET3 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463525 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 89/163 (54.60%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           MA SKGSR+A+LILRILTFILIFISL+I ATNSKTL KGT  E K+EFK+VYSYRY++A 
Sbjct: 1   MAASKGSRIASLILRILTFILIFISLIINATNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
           AVIG  L                                             IDMRANLK
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDMRANLK 120

[Close]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL
Match: A0A6J1JJD2 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487466 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.9e-28
Identity = 87/163 (53.37%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           M  SKGSR+A+LILRILTFILIFISLLI ATNSKTL KG   ETK +FKDVYSYRY+++ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLLINATNSKTLNKGAENETKFKFKDVYSYRYLIST 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
            +IGA L                                             ID+R  LK
Sbjct: 61  TIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

[Close]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL
Match: A0A6J1JSF8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487423 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 87/163 (53.37%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           MA SKGSR+ATLILRILT ILIFISL+I A+NSKTL KGT  E K+EFK+VYSYRY++A 
Sbjct: 1   MAASKGSRIATLILRILTLILIFISLIINASNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
           AVIG  L                                             ID RANLK
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDTRANLK 120

[Close]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL
Match: A0A6J1GRM4 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456492 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 86/163 (52.76%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           M  SKGSR+A+LILRILTFILIFISL+I ATNSKT  KG   ET  +FKDVYSYRY+++ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLIINATNSKTFNKGAENETTFKFKDVYSYRYLIST 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
            VIGA L                                             ID+R  LK
Sbjct: 61  TVIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

[Close]

BLAST of Lsi02G016480 vs. NCBI nr
Match: XP_022134193.1 (CASP-like protein 4D1 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-31
Identity = 92/163 (56.44%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           MA SKGSR+A+LILRILTF+LIFISLLIIATNSKT+ KGT  E KVEFKDVYSYRY+ A 
Sbjct: 1   MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAA 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
           AVIGA L                                             ID+R+N K
Sbjct: 61  AVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKLLTYLLLSGASAGLGAGIDLRSNYK 120

[Close]

BLAST of Lsi02G016480 vs. NCBI nr
Match: XP_038877614.1 (CASP-like protein 4D1 [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 8.0e-31
Identity = 92/160 (57.50%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 4   SKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVI 63
           SKGSR+A+LILRILTFILIF++LLIIATNSKT+ +GT+ ETK+EFKDV SYRY+VAVAVI
Sbjct: 3   SKGSRIASLILRILTFILIFVALLIIATNSKTVLEGTVNETKIEFKDVNSYRYLVAVAVI 62

Query: 64  GATLR--------------------------------------------IDMRANLKVLA 120
           G  L                                             IDMR N K L 
Sbjct: 63  GGALSLLQIAFTIYHLVTKGDGTPLFDLFSDKLLSYLLLSGASAGLGAGIDMRVNFKELV 122

[Close]

BLAST of Lsi02G016480 vs. NCBI nr
Match: XP_022963262.1 (CASP-like protein 4D1 [Cucurbita moschata] >KAG6602371.1 CASP-like protein 4D1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 89/163 (54.60%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           MA SKGSR+A+LILRILTFILIFISL+I ATNSKTL KGT  E K+EFK+VYSYRY++A 
Sbjct: 1   MAASKGSRIASLILRILTFILIFISLIINATNSKTLNKGTENEAKLEFKNVYSYRYLIAA 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
           AVIG  L                                             IDMRANLK
Sbjct: 61  AVIGGVLSLIQIILSIYHMVTKSEGTPLFYLFSDYLLSYLLLSSSSAALGAGIDMRANLK 120

[Close]

BLAST of Lsi02G016480 vs. NCBI nr
Match: XP_022990642.1 (CASP-like protein 4D1 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 87/163 (53.37%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           M  SKGSR+A+LILRILTFILIFISLLI ATNSKTL KG   ETK +FKDVYSYRY+++ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLLINATNSKTLNKGAENETKFKFKDVYSYRYLIST 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
            +IGA L                                             ID+R  LK
Sbjct: 61  TIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

[Close]

BLAST of Lsi02G016480 vs. NCBI nr
Match: XP_023525049.1 (CASP-like protein 4D1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 86/163 (52.76%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MAVSKGSRMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAV 60
           M  SKGSR+A+LILRILTFILIFISL+I ATNSKT  KG   ETK +FKDVYSYRY+++ 
Sbjct: 1   MEGSKGSRIASLILRILTFILIFISLIINATNSKTFNKGAQNETKFKFKDVYSYRYLIST 60

Query: 61  AVIGATLR--------------------------------------------IDMRANLK 120
            +IGA L                                             ID+R  LK
Sbjct: 61  MIIGAVLSLLQIALNIYNVVTKSHRTLLFDMFSDKLLSYLLLSGASAGLGAGIDLRVGLK 120

[Close]

BLAST of Lsi02G016480 vs. TAIR 10
Match: AT2G39518.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 44/161 (27.33%), Postives = 74/161 (45.96%), Query Frame = 0


Query: 8   RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATL 67
           ++  L+LR+LT + + I+L+I++TNS T+        K  FKDVY+YRY+++ AVIG   
Sbjct: 14  KVLLLLLRVLTGVFLVIALIILSTNSVTIVSQG-SALKFHFKDVYAYRYMLSAAVIGLVY 73

Query: 68  RI--------------------------DMRANLKVLAGNV------------------- 119
            +                          D   +  V  G+                    
Sbjct: 74  AVIQLFFTISEFATGVKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVAL 133

[Close]

BLAST of Lsi02G016480 vs. TAIR 10
Match: AT2G39530.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 8   RMATLILRILTFILIFISLLIIATNSKTLFKGTLGETKVEFKDVYSYRYVVAVAVIGATL 67
           R   L+LR+LT   + I++++I+TN+ TL + +    K+ F DVY+YRY+++ AVIG   
Sbjct: 14  RTVLLLLRVLTAAFLLITVVLISTNTVTL-EISSTSIKLPFNDVYAYRYMLSAAVIGLVY 73

Query: 68  RI----------------------------------------------DMR----ANLKV 120
            +                                              D++    A ++ 
Sbjct: 74  AVVQLFLTISQFATGKTHPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDTYIALIEF 133

The following BLAST results are available for this feature:

BLAST of Lsi02G016480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SXY8	1.4e-09	36.48	CASP-like protein 4D1 OS=Ricinus communis OX=3988 GN=RCOM_1206790 PE=3 SV=1	[more]
B9NBE5	3.4e-08	34.76	CASP-like protein 4D1 OS=Populus trichocarpa OX=3694 GN=POPTR_0010s21230g PE=2 S...	[more]
Q2R2T4	2.7e-05	55.36	CASP-like protein 4D1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0549625 P...	[more]
Q56X75	3.5e-05	27.33	CASP-like protein 4D2 OS=Arabidopsis thaliana OX=3702 GN=At2g39518 PE=2 SV=1	[more]
D7LD59	4.6e-05	26.71	CASP-like protein 4D2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT...	[more]

BLAST of Lsi02G016480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1A4	1.3e-31	56.44	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006513 PE=3 SV=1	[more]
A0A6J1HET3	1.4e-28	54.60	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463525 PE=3 SV=1	[more]
A0A6J1JJD2	8.9e-28	53.37	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487466 PE=3 SV=1	[more]
A0A6J1JSF8	1.5e-27	53.37	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487423 PE=3 SV=1	[more]
A0A6J1GRM4	3.4e-27	52.76	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456492 PE=3 SV=1	[more]

BLAST of Lsi02G016480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134193.1	2.8e-31	56.44	CASP-like protein 4D1 [Momordica charantia]	[more]
XP_038877614.1	8.0e-31	57.50	CASP-like protein 4D1 [Benincasa hispida]	[more]
XP_022963262.1	2.8e-28	54.60	CASP-like protein 4D1 [Cucurbita moschata] >KAG6602371.1 CASP-like protein 4D1, ...	[more]
XP_022990642.1	1.8e-27	53.37	CASP-like protein 4D1 [Cucurbita maxima]	[more]
XP_023525049.1	1.8e-27	52.76	CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi02G016480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39518.1	2.5e-06	27.33	Uncharacterised protein family (UPF0497)	[more]
AT2G39530.1	2.1e-05	27.78	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 6..65 e-value: 3.1E-8 score: 33.5
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 6..66
None	No IPR available	PANTHER	PTHR11615:SF148	CASP-LIKE PROTEIN 4D2	coord: 69..118
None	No IPR available	PANTHER	PTHR11615:SF148	CASP-LIKE PROTEIN 4D2	coord: 6..66
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 69..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016480.1	Lsi02G016480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane