Lsi02G016390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G016390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 22240786 .. 22241568 (-)
RNA-Seq Expression	Lsi02G016390
Synteny	Lsi02G016390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCAAAGATTGTTCATGTTCGGCAATGTTTCCTCCGTTCTTGTACCATTCTTCTAAAGCCATCTCAGTAACACAAGCCACATGGACATGGTACTCGCCGCACTCAGAGATGTACGACCAGCCCCCGTCTTTAAGGCTCTTCCTCTTGCACCACATGCACTTCCCTTTCACCTTCTTGTGGAGATTGAACTCCACATCTTCGATTTGGTAACTCTTTTTTAGGTTTAGGCAGCATGGATGGAGATCTAAGTCAGGTTTGTCACAGTGGAACACGAAGCCATTGATGGTTCTAGTGCAAGCATCACACTTTATTCTGCATTCCTCATGGCAGGGTTCTGGTGGGTTTCTAAGGAATTCAAAGGTGGAACCCGGAAAGAATTCATGAGAATTTGGTGCCTTATGTGAAAACATACAGGCTTTGTGAAGATCAAAATTGCATTTTTTGCATCGGTATCGTGGCCCGAAGCCTAGTTCCTTGCAGCCATCGCAGGTGTAAGGTTTCAGGTACTTCTTCAGCTCCAGTTCATGCTCCAGGTGCCTTGGATTACACAACTGCTTTGCCATTTTTTTTTTTTCCTTGAACCGAAAAAATAACACCAACAAAACAAGAGATAATTGATGGGTTACAGGGTAAGGAAGAGCAGAGAAGAGATTGGGAAAATTGCTGGATGGGCGGAGATGATTGCAGGAAGGCAGAGAAGAGATTTGAGAAGATTGCAGGCAGGGATAGCAGAGAAGAAGAGAATTGTGAATATGGAAAGAAATAATGGGAAGAGATTTTGA

mRNA sequence

AGCCAAAGATTGTTCATGTTCGGCAATGTTTCCTCCGTTCTTGTACCATTCTTCTAAAGCCATCTCAGTAACACAAGCCACATGGACATGGTACTCGCCGCACTCAGAGATGTACGACCAGCCCCCGTCTTTAAGGCTCTTCCTCTTGCACCACATGCACTTCCCTTTCACCTTCTTGTGGAGATTGAACTCCACATCTTCGATTTGGTTTAGGCAGCATGGATGGAGATCTAAGTCAGGTTTGTCACAGTGGAACACGAAGCCATTGATGGTTCTAGTGCAAGCATCACACTTTATTCTGCATTCCTCATGGCAGGGTTCTGGTGGGTGGAACCCGGAAAGAATTCATGAGAATTTGGTGCCTTATGTGAAAACATACAGGCTTTGTGAAGATCAAAATTGCATTTTTTGCATCGGTATCGTGGCCCGAAGCCTAGTTCCTTGCAGCCATCGCAGGGTAAGGAAGAGCAGAGAAGAGATTGGGAAAATTGCTGGATGGGCGGAGATGATTGCAGGAAGGCAGAGAAGAGATTTGAGAAGATTGCAGGCAGGGATAGCAGAGAAGAAGAGAATTGTGAATATGGAAAGAAATAATGGGAAGAGATTTTGA

Coding sequence (CDS)

ATGTTTCCTCCGTTCTTGTACCATTCTTCTAAAGCCATCTCAGTAACACAAGCCACATGGACATGGTACTCGCCGCACTCAGAGATGTACGACCAGCCCCCGTCTTTAAGGCTCTTCCTCTTGCACCACATGCACTTCCCTTTCACCTTCTTGTGGAGATTGAACTCCACATCTTCGATTTGGTTTAGGCAGCATGGATGGAGATCTAAGTCAGGTTTGTCACAGTGGAACACGAAGCCATTGATGGTTCTAGTGCAAGCATCACACTTTATTCTGCATTCCTCATGGCAGGGTTCTGGTGGGTGGAACCCGGAAAGAATTCATGAGAATTTGGTGCCTTATGTGAAAACATACAGGCTTTGTGAAGATCAAAATTGCATTTTTTGCATCGGTATCGTGGCCCGAAGCCTAGTTCCTTGCAGCCATCGCAGGGTAAGGAAGAGCAGAGAAGAGATTGGGAAAATTGCTGGATGGGCGGAGATGATTGCAGGAAGGCAGAGAAGAGATTTGAGAAGATTGCAGGCAGGGATAGCAGAGAAGAAGAGAATTGTGAATATGGAAAGAAATAATGGGAAGAGATTTTGA

Protein sequence

MFPPFLYHSSKAISVTQATWTWYSPHSEMYDQPPSLRLFLLHHMHFPFTFLWRLNSTSSIWFRQHGWRSKSGLSQWNTKPLMVLVQASHFILHSSWQGSGGWNPERIHENLVPYVKTYRLCEDQNCIFCIGIVARSLVPCSHRRVRKSREEIGKIAGWAEMIAGRQRRDLRRLQAGIAEKKRIVNMERNNGKRF

Homology

[Close]

BLAST of Lsi02G016390 vs. ExPASy TrEMBL
Match: A0A6J1JYE4 (uncharacterized protein LOC111489005 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489005 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 55/155 (35.48%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 1   MFPPFLYHSSKAISVTQATWTWYSPHSEMYDQPPSLRLFLLHHMHFPFTFLWRLNSTSSI 60
           +F   L +SS  IS+TQ+T TW    +E   Q   LR+  +  +          N    +
Sbjct: 86  VFSLLLSNSSNTISITQSTSTWEKIRAE---QRRDLRICRMECVAI-------YNEIEGV 145

Query: 61  WFR------QHGWRSKSGLSQWNTKPLMVLVQASHFILHSSWQGSGGWNPERIHENL-VP 120
            F+      Q GWRSK   SQW T PL+  +QAS F LH SWQ  GG     +  NL V 
Sbjct: 146 EFQFPLSSGQQGWRSKLSFSQWYTTPLIGFLQASRFPLHPSWQALGG-----VLRNLKVN 205

Query: 121 YVKTYRLCEDQNCIFCIGIVARSLVPCSHRRVRKS 149
           +V TYR C D+N  F          PC+  R + S
Sbjct: 206 FVVTYRPCYDRNPTF----------PCTRCRCKVS 215

[Close]

BLAST of Lsi02G016390 vs. ExPASy TrEMBL
Match: A0A6J1JWM4 (uncharacterized protein LOC111489005 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489005 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-06
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 1   MFPPFLYHSSKAISVTQATWTWYSPHSEMYDQPPSLRLFLLHHMHFPFTFLWRLNSTSSI 60
           +F   L +SS  IS+TQ+T TW    +E   Q   LR+  +  +          N    +
Sbjct: 86  VFSLLLSNSSNTISITQSTSTWEKIRAE---QRRDLRICRMECVAI-------YNEIEGV 145

Query: 61  WFR------QHGWRSKSGLSQWNTKPLMVLVQASHFILHSSWQGSGG 102
            F+      Q GWRSK   SQW T PL+  +QAS F LH SWQ  GG
Sbjct: 146 EFQFPLSSGQQGWRSKLSFSQWYTTPLIGFLQASRFPLHPSWQALGG 182

[Close]

BLAST of Lsi02G016390 vs. NCBI nr
Match: XP_022992764.1 (uncharacterized protein LOC111489005 isoform X1 [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-09
Identity = 55/155 (35.48%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 1   MFPPFLYHSSKAISVTQATWTWYSPHSEMYDQPPSLRLFLLHHMHFPFTFLWRLNSTSSI 60
           +F   L +SS  IS+TQ+T TW    +E   Q   LR+  +  +          N    +
Sbjct: 86  VFSLLLSNSSNTISITQSTSTWEKIRAE---QRRDLRICRMECVAI-------YNEIEGV 145

Query: 61  WFR------QHGWRSKSGLSQWNTKPLMVLVQASHFILHSSWQGSGGWNPERIHENL-VP 120
            F+      Q GWRSK   SQW T PL+  +QAS F LH SWQ  GG     +  NL V 
Sbjct: 146 EFQFPLSSGQQGWRSKLSFSQWYTTPLIGFLQASRFPLHPSWQALGG-----VLRNLKVN 205

Query: 121 YVKTYRLCEDQNCIFCIGIVARSLVPCSHRRVRKS 149
           +V TYR C D+N  F          PC+  R + S
Sbjct: 206 FVVTYRPCYDRNPTF----------PCTRCRCKVS 215

[Close]

BLAST of Lsi02G016390 vs. NCBI nr
Match: XP_022992765.1 (uncharacterized protein LOC111489005 isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 1   MFPPFLYHSSKAISVTQATWTWYSPHSEMYDQPPSLRLFLLHHMHFPFTFLWRLNSTSSI 60
           +F   L +SS  IS+TQ+T TW    +E   Q   LR+  +  +          N    +
Sbjct: 86  VFSLLLSNSSNTISITQSTSTWEKIRAE---QRRDLRICRMECVAI-------YNEIEGV 145

Query: 61  WFR------QHGWRSKSGLSQWNTKPLMVLVQASHFILHSSWQGSGG 102
            F+      Q GWRSK   SQW T PL+  +QAS F LH SWQ  GG
Sbjct: 146 EFQFPLSSGQQGWRSKLSFSQWYTTPLIGFLQASRFPLHPSWQALGG 182

The following BLAST results are available for this feature:

BLAST of Lsi02G016390 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G016390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYE4	1.4e-09	35.48	uncharacterized protein LOC111489005 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JWM4	5.4e-06	37.38	uncharacterized protein LOC111489005 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi02G016390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992764.1	2.8e-09	35.48	uncharacterized protein LOC111489005 isoform X1 [Cucurbita maxima]	[more]
XP_022992765.1	1.1e-05	37.38	uncharacterized protein LOC111489005 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lsi02G016390 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016390.1	Lsi02G016390.1	mRNA