Lsi02G016240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G016240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ribosomal RNA large subunit methyltransferase E
Location	chr02: 22138780 .. 22140694 (-)
RNA-Seq Expression	Lsi02G016240
Synteny	Lsi02G016240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAATGTATTAAGGAAAAAAAAAAAAAGAACTGAAAACCCAAGTTGAAACCCTAGAGAAGGGTTTTAGATACAAGCAGTTTTCCGGGAAGAAGAAGAATTGGGGAAGAACGAAATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCGCAAGATCCGCCTTCAAGGTATAATCTACTTCCCCTCACTTTTTTTCCTCCTCCTGATAACCTTCCTGCCTCGCCAATCCTAATTATATGTCTTTTTCCTCCTCTGCTCATAACAGTTGCTTCAGATTCAGAACCAATTCAAATTGATTACTTCAGGCTCCTCTGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTCTGATTCCTGCACTCTTCACCTCCATTCCGCTAACTTTTCCCTCCTTTTCACTTCCCAAATATTTCTCTGTTGGTGATAGGTAGCTTGCCAGAGTCTGGGGCCTCGGAAAAATGGAGGCTCTGTCTTGGGTATTGATCTCAAGGTGAACTGTTTTTTCGTCTTCTGGGTTACTTAATGATGCTGAATCTCATTTATTTATCAGAAAGTAATCATTTGTAAAAGAAAATGTGGGTCTTGCAGAACAGAAGGTAAAGGTTCCTCATGTGCACTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGATGTCACTATCTCCTAAGGTAACTTCACTTATCAAAAGTAGGAAATTTCTTGTAGTGTTATTTTTACCAATTTCATTAGCATCATTCCTGAACAGCTCAATTGTTACATTGGTTGTTCTTGAATAAGAATGTTCTTTCACCTCGGTCTCTTCTCTTTGAATGACATTATTAATATCACTCATTAACTCAATCACTAGCATTCAATTGAAGTGCAAAATTTGTGAAATGATATTCTCTCTTCGCCTTAGAAAATTAAAGTTGTTAAACAAAAAAACTTAAACATACACATGAGGAGTATGGAGAGAAGATGCAGTAGTGACTGGGGAAGAAAAATTTGTGAGTTACAGAAAAGAAGTTACACTGTCTAAATCCTGTTTTTTTTTGCTTGGTTCTGTAGGAGAAGGGATTTTCTGTAATACTCTCAGACATGTGCCCCTTGGTATCTGGAATCACCACTAGAGATGCGACATTATCAGTTGAATTAGGGATGCAAGCAGTTAATTTGGCTCTTGGAGAAGTTGCGTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGACAATGTCGATGACTCAACTTCAGTTTCAGATTGTGATGGCGTATTAAGACTAGGAGGCCACCTCGTTATAAAACTATTGGAGAGTGAAGATACCCAAGGTAGAATTTTATTTCCATATAAAAATCTATAGCTGGTTTTGTAGTTGGTTTGTCTTTACATTCTTCCTGTATACTTTATCTCAGAATTCAGCCGTATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAAGGCTACTAGATCGTCATCAAGAGAGATTTATCTGATATGTCAAAGCTTGCAGGCAAGAACATGAGCTGACTGCAAACTGTATACAACTAGAATTTGAGATGAGAGCCAAATCCCAGAGTACTTCGAAAACCAAATATCAAACCAAGGTGGTCAGATGGAAGCGGAGTTCCCAAACAATGTAGAGGTTTTTTCCGGAACTAGTAGTCGCAATGCGAATTACTTGAGAGATTTGTTGAGTCACAGACTTGCGTTAGTTGTTTGCTATAAGATAAGCTATTATTTAACTTGCTCTGTTCAGAATTAAGTCAACCAAGTGGCTTTCATTGAGATTGTGTGAACCAAAAACAAAAAGGACACTCGTATTCATAAAATTTACATATCAAAATACAAATTGAAACTTTCCTAC

mRNA sequence

GAAAAAATGTATTAAGGAAAAAAAAAAAAAGAACTGAAAACCCAAGTTGAAACCCTAGAGAAGGGTTTTAGATACAAGCAGTTTTCCGGGAAGAAGAAGAATTGGGGAAGAACGAAATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAGAACCAATTCAAATTGATTACTTCAGGCTCCTCTGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCGGAAAAATGGAGGCTCTGTCTTGGAACAGAAGGTAAAGGTTCCTCATGTGCACTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGATGTCACTATCTCCTAAGGAGAAGGGATTTTCTGTAATACTCTCAGACATGTGCCCCTTGGTATCTGGAATCACCACTAGAGATGCGACATTATCAGTTGAATTAGGGATGCAAGCAGTTAATTTGGCTCTTGGAGAAGTTGCGTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGACAATGTCGATGACTCAACTTCAGTTTCAGATTGTGATGGCGTATTAAGACTAGGAGGCCACCTCGTTATAAAACTATTGGAGAGTGAAGATACCCAAGAATTCAGCCGTATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAAGGCTACTAGATCGTCATCAAGAGAGATTTATCTGATATGTCAAAGCTTGCAGGCAAGAACATGAGCTGACTGCAAACTGTATACAACTAGAATTTGAGATGAGAGCCAAATCCCAGAGTACTTCGAAAACCAAATATCAAACCAAGGTGGTCAGATGGAAGCGGAGTTCCCAAACAATGTAGAGGTTTTTTCCGGAACTAGTAGTCGCAATGCGAATTACTTGAGAGATTTGTTGAGTCACAGACTTGCGTTAGTTGTTTGCTATAAGATAAGCTATTATTTAACTTGCTCTGTTCAGAATTAAGTCAACCAAGTGGCTTTCATTGAGATTGTGTGAACCAAAAACAAAAAGGACACTCGTATTCATAAAATTTACATATCAAAATACAAATTGAAACTTTCCTAC

Coding sequence (CDS)

ATGAGTGGAGCAGGAGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCGCAAGATCCGCCTTCAAGTTGCTTCAGATTCAGAACCAATTCAAATTGATTACTTCAGGCTCCTCTGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCGGAAAAATGGAGGCTCTGTCTTGGAACAGAAGGTAAAGGTTCCTCATGTGCACTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGATGTCACTATCTCCTAAGGAGAAGGGATTTTCTGTAATACTCTCAGACATGTGCCCCTTGGTATCTGGAATCACCACTAGAGATGCGACATTATCAGTTGAATTAGGGATGCAAGCAGTTAATTTGGCTCTTGGAGAAGTTGCGTTAGGTGTTGGAGATGTTATACATGGAAAGGACAAGGACAATGTCGATGACTCAACTTCAGTTTCAGATTGTGATGGCGTATTAAGACTAGGAGGCCACCTCGTTATAAAACTATTGGAGAGTGAAGATACCCAAGAATTCAGCCGTATGTTGAAACCACTCTTCAGAAAGGCATCCTGGTTGAGGCCTAAGGCTACTAGATCGTCATCAAGAGAGATTTATCTGATATGTCAAAGCTTGCAGGCAAGAACATGA

Protein sequence

MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART

Homology

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BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot
Match: A8ZT18 (Ribosomal RNA large subunit methyltransferase E OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rlmE PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-20
Identity = 68/224 (30.36%), Postives = 105/224 (46.88%), Query Frame = 0


Query: 3   GAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLG 62
           G   PD + R+A+   Y ARS +KL +IQ +  ++  G++VLDLGC PG+W+  A +++G
Sbjct: 8   GRKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVG 67

Query: 63  PRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLM-SLSPKEKGFSVILSDMCPL 122
               GG V    +K    H  ++  ++  D+  + +  L  +L P      V+LSDM P 
Sbjct: 68  ---RGGKVTGIDLKKVATHMPAQATSLQEDIYEIDREALAGTLGP----LDVVLSDMAPD 127

Query: 123 VSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGG 182
             G    DA  S  L   A++LAL                              +L+ GG
Sbjct: 128 TMGNKFTDAARSFHLAAAALDLAL-----------------------------FLLKPGG 187

Query: 183 HLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLI 226
           H V K+ + ED Q F  M+K  F +    +P+  R  S+E Y+I
Sbjct: 188 HFVCKVFQGEDFQNFVNMVKAEFERHKVFKPETCRKDSKETYVI 195

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BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot
Match: B8FL12 (Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rlmE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-20
Identity = 68/218 (31.19%), Postives = 102/218 (46.79%), Query Frame = 0


Query: 8   DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNG 67
           D +  +AQ+ G+ ARS FKL ++Q ++K++  G  VLDLGCAPG+WL+ A Q +G   + 
Sbjct: 13  DHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIVG---DS 72

Query: 68  GSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCPLVSGITT 127
           G V+   +K          Q +  D   L +  L  +    + F V+LSDM P  +GI  
Sbjct: 73  GRVIGLDLKPMDQPDKPNAQFIQGDAFELTQEFLDEIG---RDFDVVLSDMAPNTTGIKN 132

Query: 128 RDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKL 187
            DA  S  L   A+  A+                              VL+ GG  V K+
Sbjct: 133 VDALKSAALCESALAAAV-----------------------------TVLKPGGSFVCKI 192

Query: 188 LESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLI 226
            + E    F + +K  F K    +P++TR  SREIY++
Sbjct: 193 FQGEGFDAFIKDVKKYFTKHKIFKPESTRKQSREIYVV 195

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BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot
Match: B9LSX2 (Ribosomal RNA large subunit methyltransferase E OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) OX=416348 GN=rlmE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-20
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 0


Query: 8   DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNG 67
           D +Y ++++ GY ARSA+KL QI  +  L   G +V+DLG APG WLQVA + +G     
Sbjct: 5   DEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEEVG---ES 64

Query: 68  GSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCPLVSGITT 127
           G+V+   ++      D  V+T+  D+        +  +  E+G  V++SDM P ++G   
Sbjct: 65  GTVVGVDLQRIDDLDDHDVETIRGDMTEERTRHYLREAIGERGADVVISDMAPNMTGEYA 124

Query: 128 RDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKL 187
            D   SV L  QA ++A                             + +L  GG  V+K+
Sbjct: 125 LDHARSVHLARQAFDVA-----------------------------EELLAPGGDFVVKV 184

Query: 188 LESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSL 230
            + ED   F   ++  F     + P A+R SS E+YL+ + L
Sbjct: 185 FQGEDLDAFREDVRAEFEYLRTVSPPASRDSSSEVYLVAKGL 194

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BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot
Match: C3K267 (Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=rlmE PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-19
Identity = 69/227 (30.40%), Postives = 109/227 (48.02%), Query Frame = 0


Query: 8   DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLG--PRK 67
           D + ++AQ+ GY +R+++KLL+IQ++ KLI  G SV+DLG APG W QV  + +G   R 
Sbjct: 17  DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIGGQGRL 76

Query: 68  NGGSVLEQK--VKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCPLVS 127
               +LE      V  VH D    TV A ++    N  + L         ++SDM P +S
Sbjct: 77  IASDILEMDSIPDVTFVHGDFTQDTVLAQILEAVGNSQVDL---------VISDMAPNMS 136

Query: 128 GITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHL 187
           G+   D   ++ L   A++LA                               VLR GG  
Sbjct: 137 GLPAVDMPRAMFLCELALDLA-----------------------------GRVLRPGGDF 196

Query: 188 VIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQ 231
           ++K+ + E   E+ + ++ LF K    +P ++R  SRE YL+C+  +
Sbjct: 197 LVKVFQGEGFDEYHKNIRKLFDKVQTRKPDSSRDRSREQYLLCRGFR 205

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BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot
Match: B9KIP4 (Ribosomal RNA large subunit methyltransferase E OS=Anaplasma marginale (strain Florida) OX=320483 GN=rlmE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19
Identity = 69/212 (32.55%), Postives = 101/212 (47.64%), Query Frame = 0


Query: 14  AQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNGGSVLEQ 73
           A++ GY +RSA+KL+ I  +FKL+  G  VLDLG  PG W QVA + +     GG     
Sbjct: 3   AKKHGYRSRSAYKLIDIDCKFKLLQRGRYVLDLGSCPGGWAQVAAERVA---EGGKAHVV 62

Query: 74  KVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCPLVSGITTRDATLS 133
            V +  +     V  V  DV + P  +L+  + +++ F V+LSDM P   G    D    
Sbjct: 63  AVDMAPMERIPNVDFVQCDVEHSP--ELLRAALQDRKFDVVLSDMAPKSCGHRQVDHANI 122

Query: 134 VELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLVIKLLESEDT 193
           + L   A++LA+                               LR GG  V K+L+ E  
Sbjct: 123 INLCEMALDLAV-----------------------------EFLRSGGSFVTKILQGEYE 180

Query: 194 QEFSRMLKPLFRKASWLRPKATRSSSREIYLI 226
           QEF R L+  F   ++ +PK++RS S EIYL+
Sbjct: 183 QEFRRSLQYYFASVTYFKPKSSRSESSEIYLV 180

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BLAST of Lsi02G016240 vs. ExPASy TrEMBL
Match: A0A1S3C9F1 (ribosomal RNA large subunit methyltransferase E isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498139 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 217/238 (91.18%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHVHCDSRVQTVCADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVL
Sbjct: 121 MCPIVSGITTRDAALSVELGMQAVNLALGEAALGVGEVIHGKDKDSIDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART 234
           R GGHLV+KLLESEDTQEFSRMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Sbjct: 181 RKGGHLVLKLLESEDTQEFSRMLKPLFRKSSWLRPKATRSSSREIYLICQSLQLQART 238

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BLAST of Lsi02G016240 vs. ExPASy TrEMBL
Match: A0A0A0KQZ0 (FtsJ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517710 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.0e-115
Identity = 219/238 (92.02%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPH+HCDSRVQTV ADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKDKD+VDDSTS SDCDGVL
Sbjct: 121 MCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART 234
           R GGHLV+KLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS  LQART
Sbjct: 181 RQGGHLVLKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLHLQART 238

[Close]

BLAST of Lsi02G016240 vs. ExPASy TrEMBL
Match: A0A1S3C8U8 (ribosomal RNA large subunit methyltransferase E isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498139 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 217/261 (83.14%), Postives = 226/261 (86.59%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHVHCDSRVQTVCADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVL
Sbjct: 121 MCPIVSGITTRDAALSVELGMQAVNLALGEAALGVGEVIHGKDKDSIDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQ-----------------------EFSRMLKPLFRKASWLRPKA 234
           R GGHLV+KLLESEDTQ                       EFSRMLKPLFRK+SWLRPKA
Sbjct: 181 RKGGHLVLKLLESEDTQGRILFPQLFYTWFCLPSQSSFISEFSRMLKPLFRKSSWLRPKA 240

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BLAST of Lsi02G016240 vs. ExPASy TrEMBL
Match: A0A6J1H9J8 (uncharacterized protein LOC111461336 OS=Cucurbita moschata OX=3662 GN=LOC111461336 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 214/238 (89.92%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQ QFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP KNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLPKNKL +LSPKEKGFSVILSD
Sbjct: 61  LGPLKNGGSVVGIDLKKVKVPHVHCDSRVQTVCADVMNLPKNKLKALSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDG 180
           MCPLVSGITTRDA+LSVELGMQAVNLALGE AL  G DV+HGK+K DNVDDS  VSD DG
Sbjct: 121 MCPLVSGITTRDASLSVELGMQAVNLALGEAALSHGDDVMHGKNKEDNVDDSALVSDYDG 180

Query: 181 VLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART 234
           VL+ GGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQA+T
Sbjct: 181 VLQKGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQAKT 238

[Close]

BLAST of Lsi02G016240 vs. ExPASy TrEMBL
Match: A0A1S4E250 (ribosomal RNA large subunit methyltransferase E isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498139 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 214/261 (81.99%), Postives = 223/261 (85.44%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFK   IQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFK---IQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHVHCDSRVQTVCADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVL
Sbjct: 121 MCPIVSGITTRDAALSVELGMQAVNLALGEAALGVGEVIHGKDKDSIDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQ-----------------------EFSRMLKPLFRKASWLRPKA 234
           R GGHLV+KLLESEDTQ                       EFSRMLKPLFRK+SWLRPKA
Sbjct: 181 RKGGHLVLKLLESEDTQGRILFPQLFYTWFCLPSQSSFISEFSRMLKPLFRKSSWLRPKA 240

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BLAST of Lsi02G016240 vs. NCBI nr
Match: XP_038889598.1 (ribosomal RNA large subunit methyltransferase E isoform X1 [Benincasa hispida])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 221/236 (93.64%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPKNKL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDLKKVKVPHVHCDSRVQTVCADVMNLPKNKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKD DNVDDSTSVSDCDGVL
Sbjct: 121 MCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDNDNVDDSTSVSDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART 234
           R GGHLVIKLLESEDTQEFSRMLKPLFRK+S LRPKATRSSSREIYLICQSL+ART
Sbjct: 181 RQGGHLVIKLLESEDTQEFSRMLKPLFRKSSLLRPKATRSSSREIYLICQSLKART 236

[Close]

BLAST of Lsi02G016240 vs. NCBI nr
Match: XP_008458862.1 (PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X3 [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 4.6e-115
Identity = 217/238 (91.18%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHVHCDSRVQTVCADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVL
Sbjct: 121 MCPIVSGITTRDAALSVELGMQAVNLALGEAALGVGEVIHGKDKDSIDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART 234
           R GGHLV+KLLESEDTQEFSRMLKPLFRK+SWLRPKATRSSSREIYLICQS  LQART
Sbjct: 181 RKGGHLVLKLLESEDTQEFSRMLKPLFRKSSWLRPKATRSSSREIYLICQSLQLQART 238

[Close]

BLAST of Lsi02G016240 vs. NCBI nr
Match: XP_004142767.1 (uncharacterized protein LOC101216412 isoform X2 [Cucumis sativus] >KGN51324.1 hypothetical protein Csa_007820 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 219/238 (92.02%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPH+HCDSRVQTV ADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCPLVSGITTRDA LSVELGMQAVNLALGE ALGVGDVIHGKDKD+VDDSTS SDCDGVL
Sbjct: 121 MCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS--LQART 234
           R GGHLV+KLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS  LQART
Sbjct: 181 RQGGHLVLKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLHLQART 238

[Close]

BLAST of Lsi02G016240 vs. NCBI nr
Match: XP_008458861.1 (PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X1 [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 4.0e-111
Identity = 217/261 (83.14%), Postives = 226/261 (86.59%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+KL SLSPKEKGFSVILSD
Sbjct: 61  LGPPRNGGSVLGIDIKKVKVPHVHCDSRVQTVCADVMNLPKSKLKSLSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MCP+VSGITTRDA LSVELGMQAVNLALGE ALGVG+VIHGKDKD++DDSTS SDCDGVL
Sbjct: 121 MCPIVSGITTRDAALSVELGMQAVNLALGEAALGVGEVIHGKDKDSIDDSTSASDCDGVL 180

Query: 181 RLGGHLVIKLLESEDTQ-----------------------EFSRMLKPLFRKASWLRPKA 234
           R GGHLV+KLLESEDTQ                       EFSRMLKPLFRK+SWLRPKA
Sbjct: 181 RKGGHLVLKLLESEDTQGRILFPQLFYTWFCLPSQSSFISEFSRMLKPLFRKSSWLRPKA 240

[Close]

BLAST of Lsi02G016240 vs. NCBI nr
Match: KAG6602386.1 (hypothetical protein SDJN03_07619, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 408.7 bits (1049), Expect = 3.4e-110
Identity = 213/238 (89.50%), Postives = 223/238 (93.70%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAGAPDFFYREAQRLGYVARSAFKLLQIQ QFKLITSGSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQFKLITSGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP KNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLPKNKL +LSPKEKGFSVILSD
Sbjct: 61  LGPLKNGGSVVGIDLKKVKVPHVHCDSRVQTVCADVMNLPKNKLKALSPKEKGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVG-DVIHGKDK-DNVDDSTSVSDCDG 180
           MCP+VSGITTRDA+LSVELGMQAVNLALGE AL  G DV+HGK+K DNVDDS SVSD DG
Sbjct: 121 MCPMVSGITTRDASLSVELGMQAVNLALGEAALSHGDDVMHGKNKEDNVDDSASVSDYDG 180

Query: 181 VLRLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQART 234
           +L+ GGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQA+T
Sbjct: 181 LLQKGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQAKT 238

[Close]

BLAST of Lsi02G016240 vs. TAIR 10
Match: AT5G13830.1 (FtsJ-like methyltransferase family protein )

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-82
Identity = 159/233 (68.24%), Postives = 181/233 (77.68%), Query Frame = 0


Query: 1   MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
           MSGAG PDFFYREAQRLGYVARSAFKLLQIQ Q+KLI  GSSVLDLGCAPGAWLQVACQS
Sbjct: 1   MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60

Query: 61  LGPRKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSD 120
           LGP ++GG V+    +KVKVP   CDSRVQT+ ADV+N P+ K+  LSP++ GFSVILSD
Sbjct: 61  LGPLRSGGIVVGMDIKKVKVP-PQCDSRVQTIAADVLNFPRQKIRELSPQQLGFSVILSD 120

Query: 121 MCPLVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVL 180
           MC  VSGITTRDA LS ELGM+A++LA+G+ A+            N DD        GVL
Sbjct: 121 MCHSVSGITTRDAALSAELGMRALDLAVGQAAI--------SQSPNDDDGGPNESRPGVL 180

Query: 181 RLGGHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQSLQ 231
           R GGHLVIKLLESED Q+F+R+ KP+F KASWLRPKATR SSREIYLICQ  +
Sbjct: 181 RHGGHLVIKLLESEDAQDFARICKPIFNKASWLRPKATRPSSREIYLICQGFR 224

[Close]

BLAST of Lsi02G016240 vs. TAIR 10
Match: AT5G01230.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-13
Identity = 58/228 (25.44%), Postives = 99/228 (43.42%), Query Frame = 0


Query: 8   DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSL------ 67
           D +YR+A+  G+ ARSAFKLLQI  +F +      V+DL  APG+W QV  + L      
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYLPAKS 69

Query: 68  -GPRKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLMSLSPKEKGFSVILSDMCP 127
               K+G   L   + +  +     V  V  D+ N    +++          +++ D  P
Sbjct: 70  SAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129

Query: 128 LVSGITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLG 187
            V+G+   D  +  +L           +  G+  V H                  +L+ G
Sbjct: 130 DVTGLHDMDEFVQSQL-----------ILAGLTIVTH------------------ILKEG 189

Query: 188 GHLVIKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLICQS 229
           G  + K+   +DT      LK  F   ++ +PK++R+SS E + +C++
Sbjct: 190 GKFIAKIFRGKDTSLLYCQLKLFFPTVTFAKPKSSRNSSIEAFAVCEN 208

[Close]

BLAST of Lsi02G016240 vs. TAIR 10
Match: AT4G25730.1 (FtsJ-like methyltransferase family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-12
Identity = 62/221 (28.05%), Postives = 99/221 (44.80%), Query Frame = 0


Query: 8   DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQSLGPRKNG 67
           D +YR A+  G+ +R+++KLLQ+  ++ L+ S  +VLDL  APG W+QVA + +      
Sbjct: 11  DKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV---- 70

Query: 68  GSVLEQKVKVPHVHCDSRVQTVCADVMNLP-KNKLMSLSPKE--KGFSVILSDMCPLVSG 127
           GS++     VP +     V T+  D+     K+K+  +  +     F+++L D  P V G
Sbjct: 71  GSLVLGIDLVPILPVRGCV-TMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNVGG 130

Query: 128 ITTRDATLSVELGMQAVNLALGEVALGVGDVIHGKDKDNVDDSTSVSDCDGVLRLGGHLV 187
              ++A     L + +V LA                                L   G+LV
Sbjct: 131 AWAQEAMSQNALVIDSVRLA-----------------------------TEFLARNGNLV 190

Query: 188 IKLLESEDTQEFSRMLKPLFRKASWLRPKATRSSSREIYLI 226
            K+  S D       L  LF K    +P A+RS+S E YL+
Sbjct: 191 TKVFRSRDYNSVLYCLGRLFEKVEVFKPPASRSASAETYLV 197

[Close]

BLAST of Lsi02G016240 vs. TAIR 10
Match: AT5G01230.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-07
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 8  DFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQ 56
          D +YR+A+  G+ ARSAFKLLQI  +F +      V+DL  APG+W Q
Sbjct: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57

The following BLAST results are available for this feature:

BLAST of Lsi02G016240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8ZT18	1.2e-20	30.36	Ribosomal RNA large subunit methyltransferase E OS=Desulfococcus oleovorans (str...	[more]
B8FL12	9.9e-20	31.19	Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum aliphaticiv...	[more]
B9LSX2	9.9e-20	29.73	Ribosomal RNA large subunit methyltransferase E OS=Halorubrum lacusprofundi (str...	[more]
C3K267	3.8e-19	30.40	Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas fluorescens (stra...	[more]
B9KIP4	4.9e-19	32.55	Ribosomal RNA large subunit methyltransferase E OS=Anaplasma marginale (strain F...	[more]

BLAST of Lsi02G016240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9F1	2.2e-115	91.18	ribosomal RNA large subunit methyltransferase E isoform X3 OS=Cucumis melo OX=36...	[more]
A0A0A0KQZ0	5.0e-115	92.02	FtsJ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517710 PE=3 S...	[more]
A0A1S3C8U8	2.0e-111	83.14	ribosomal RNA large subunit methyltransferase E isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1H9J8	2.2e-110	89.92	uncharacterized protein LOC111461336 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A1S4E250	2.0e-108	81.99	ribosomal RNA large subunit methyltransferase E isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Lsi02G016240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889598.1	1.1e-116	93.64	ribosomal RNA large subunit methyltransferase E isoform X1 [Benincasa hispida]	[more]
XP_008458862.1	4.6e-115	91.18	PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X3 [Cucumis m...	[more]
XP_004142767.1	1.0e-114	92.02	uncharacterized protein LOC101216412 isoform X2 [Cucumis sativus] >KGN51324.1 hy...	[more]
XP_008458861.1	4.0e-111	83.14	PREDICTED: ribosomal RNA large subunit methyltransferase E isoform X1 [Cucumis m...	[more]
KAG6602386.1	3.4e-110	89.50	hypothetical protein SDJN03_07619, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G016240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13830.1	4.2e-82	68.24	FtsJ-like methyltransferase family protein	[more]
AT5G01230.1	4.1e-13	25.44	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT4G25730.1	1.6e-12	28.05	FtsJ-like methyltransferase family protein	[more]
AT5G01230.2	7.6e-07	50.00	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 15..233 e-value: 6.2E-48 score: 165.0
None	No IPR available	PANTHER	PTHR10920:SF18	RRNA METHYLTRANSFERASE 2, MITOCHONDRIAL	coord: 5..230
None	No IPR available	PANTHER	PTHR10920	RIBOSOMAL RNA METHYLTRANSFERASE	coord: 5..230
IPR002877	Ribosomal RNA methyltransferase FtsJ domain	PFAM	PF01728	FtsJ	coord: 19..227 e-value: 8.1E-42 score: 143.3
IPR015507	Ribosomal RNA large subunit methyltransferase E	PIRSF	PIRSF005461	23S_rRNA_mtase	coord: 3..159 e-value: 7.4E-33 score: 111.8 coord: 160..233 e-value: 9.6E-11 score: 39.5
IPR015507	Ribosomal RNA large subunit methyltransferase E	HAMAP	MF_01547	RNA_methyltr_E	coord: 3..230 score: 26.413082
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 18..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G016240.1	Lsi02G016240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0032259	methylation
biological_process	GO:0001510	RNA methylation
molecular_function	GO:0008650	rRNA (uridine-2'-O-)-methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity