Lsi02G015960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G015960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal RNA-processing protein 8
Location	chr02: 21842345 .. 21845809 (+)
RNA-Seq Expression	Lsi02G015960
Synteny	Lsi02G015960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAATCCCAATTCCCACACCAACGATCGCCCTAGTTCCATTCTGCTTCGTCTCTGCTCTACTCTTTTTCAGCTCGTCTTCTCCCAACGCGAATTGTTTCATCAAGGTTTCCTAGCAAAAAACAACAATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGGTTCGACTTCTTTTAGAAAGTAACCTCGTTTTGGAATCAATTGTTGCTGAAGAACTTTAAGGATTATAATTTATGCATTGTGGTTGGGTGATGATGCAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACGTAATGATTTTTTCTTCTATTCTTTTATTTTCCCATCCTGTGTTTTTGGTTTTTATTGCTGGGCATGTGCTTTTGTATATGTATGTTCTAAATTTTGAGTCAGATTACCCATATTATTGGTATGTTACCTTGAATTATTGTTGGCTTCAAAATTTCAGTTTCCTATCAGTTGTTTTAAAATTGAACTGTTATGCTTAAGTTTTATTAATCTAGCTCATAGTCAGCGTTACGTTATTTGAAGCCAATTGATCTTATTTTTCGTCTTCTGTGTTTCAGAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGGTAAGTCTTGTCTCTGTTCCTACCTAATAGTAGATGTTACTATTTTAAGAACTCGTTTCTTCAGGCACGCACACGGCAGAAGATCATATCTCAGTCTCTCTCTCTTTGCAAAACCTTTTCAATAGAAGAAACTTTACCACTGACTTATAAATTATAATCATCAATCTTGTAAATATGGGATTTTTTCTATGTATACAATGTCTTAAAAGAATTTTTAGACTTCACATCTTGAGGCTCGCCTTAGGCGAGGCTCTAACTCTTAGCATGGAGACTCACATCTCCTTTCACTTCTTATGCCTCTTGTAGAAGAAGCTTACCACTTTGTGCAACTTAAGTCTCTATGCCTTGTGTAATAATTAGAAGAATAATGTTAATTTGCCTCATTCTTTAAAACTATGCAAGTTTGAGTTGTGAGAATTTGAACTAGTACTAATTTTGCTATTGTGACTTTAAAAGCATTGAAGACAAAAACCATCATAGGTATCCTACGGGTTTTCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCATGAAATTAGTTGAGGTGCGCATAAGCTGGCCCGGACACTCATGGATATATAAAAAAAAAAAAAAAGAAGAAAAGCATTAAAGACAAAAATTTATAGGATAAGTCAATCCTATTAATGATACAATAGTGAGTTGTATAAGATAAGATATTTAAAAAAAAAAAATTCATTGACTATTATGCTTATAAATGTTTGGCCTTACCAATTTAAGATTTGTAAAAAAAATTCATTTATACGGCCTAGGACTAGGGTTAACTAACATTTTGATGGCTAGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGGTGAGTTTTAGGGAGAAAAACCTTTTTCCCCCTTGATTCCTTTAACTAACTATTGATCAAGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATGTACGTGCACTGTATCTGAATTTAATGTCGTATAATGCATCGAGACATACAACTGCATTTCTTGCATGAAAATTAGTTATATTGATAATATTTTTCACTTGCCGGTGATCTTGTTGCTTTCATATAAATTTTTATTGTTAGGCTAAAGCTCATTTATTACTACTTATTTTCTTATTGACTAACAAGTTATTGGAAAGGTTTTACATTTTTTTTCTTCCCCAACATGTGGTAATTTATTGATATTGGTTAGGTTCAACCATGGGAGAATAAGTCATTGGTGAATTGCTATTAGTGATTGGAGGGAGGGACAGAAAGTGGATGATAACTTGTATAATACATTAATGTCAACGATCACAATCATTATTACAAGCAGCTATTGTTTAGAGTAATTGGATGTATAATGATCTATTTTATTGCATAGTTGCAGTTTTCGAATGATATTAGATATCAATATTGAGAAATTTTGAGGACTTGCTAAGATTGGTTGGATATTTGATGTGGCTGTGCTTTGAAACATGTGGCCTTGCTATATGTTCACTCTATAATTGCCGCTGTTCATGACTATAGATATGCCCATAGGAGCATTAGTACATTATATCCATCTCTTTCATTTGTCCATGAAATTTATATTAGACTCCTTGGCTGTTGTCTTCAAGTAAGAAAAAAAGCTCTAAAAGCTGGTTAATGTTTATGCCACTGGCAGACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGGTTTGTGGCCTATTTTTGGCTCTTTCCTTTAGTTTTGTAGCCTGATAAAACTTCTCTATCATGTGGCAACTGAACTTTTAGTGTTTCTAAATGCAGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGTATATTTATTTTCTGTTATTTAGCTATAGCTATAGCTATAGCTAGCATTGTCTGTTCCTTTCTTGCAGCTAATTAATAAGTATCATGTGCAGGACTTCTCAAATAAGATGTTTATTTTGTTATACTTCAAGAAAAAGGTTTGTAAATGTTCTGAGTACCTTATTGAAATTCTAACTGTTGTTATCCTCTCGGTTTAATCATTATTTTGCCTCTTTTATGCAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGAGTTGAGTTTGCATTTTTTTTTCTCCTTTTGTAGTTTTGTTATGTTAAAATAAACTCCTATACAAGCACTTGCTATTAGCTTCTTTCTATGTTATATAATCTTATTGGAAATCATTTTGTAGTTCATTGATGTTGTCAAATGAAATGTTGGGTTTAGTTGAGCAATTACTGAAGTCTGAAGCTTTCTTG

mRNA sequence

CTAAAATCCCAATTCCCACACCAACGATCGCCCTAGTTCCATTCTGCTTCGTCTCTGCTCTACTCTTTTTCAGCTCGTCTTCTCCCAACGCGAATTGTTTCATCAAGGTTTCCTAGCAAAAAACAACAATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGAGTTGAGTTTGCATTTTTTTTTCTCCTTTTGTAGTTTTGTTATGTTAAAATAAACTCCTATACAAGCACTTGCTATTAGCTTCTTTCTATGTTATATAATCTTATTGGAAATCATTTTGTAGTTCATTGATGTTGTCAAATGAAATGTTGGGTTTAGTTGAGCAATTACTGAAGTCTGAAGCTTTCTTG

Coding sequence (CDS)

ATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGA

Protein sequence

MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR

Homology

[Close]

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q84JC0 (Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.2e-84
Identity = 170/316 (53.80%), Postives = 210/316 (66.46%), Query Frame = 0


Query: 3   DEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGS----- 62
           +E +T++ RKR ++R    +K+     P  T P  Q+     +    K+Q+  GS     
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEE----PIETTPKNQN--EKKNQRDTKNQQHGGSSAPSK 63

Query: 63  ----TSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHW 122
               ++FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QM++W
Sbjct: 64  RPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNW 123

Query: 123 PELPVNLIIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKN 182
           PELPVN II WL  +  S +VADFGC                          GDAR++K+
Sbjct: 124 PELPVNSIINWLLSNSSSLVVADFGC--------------------------GDARIAKS 183

Query: 183 VKNKVFSFDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPR 242
           VKNKVFSFDLVSK+PSVIACDMSNT L+S+SVDVAVFCLSLMG NY+SY+ EA RVL+P 
Sbjct: 184 VKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPS 243

Query: 243 GWLLISEVKSRFDPSNGGADPKKFIKAVCELGFVSALKD---------------EKTSEG 295
           G LLI+EVKSRFDP+NGGADPK F+KAVC+LGF S LKD               +  S  
Sbjct: 244 GMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDFSNKMFILFHFKKKEQMNSNQ 287

[Close]

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: O43159 (Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 6.8e-42
Identity = 111/300 (37.00%), Postives = 145/300 (48.33%), Query Frame = 0


Query: 11  RKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRARLSG 70
           R R K +   KNK     +PD             S   +     + + +   +M  RL G
Sbjct: 189 RNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDSHEARAGALRARMAQRLDG 248

Query: 71  GHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLKEHDP 130
             FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I + L++   
Sbjct: 249 ARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPA 308

Query: 131 SFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFSFDLVSKDPSV 190
           S +VADFGC                          GD RL+ +++N V  FDL S DP V
Sbjct: 309 SLVVADFGC--------------------------GDCRLASSIRNPVHCFDLASLDPRV 368

Query: 191 IACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNG 250
             CDM+  PL+  SVDVAVFCLSLMG N   +L EA RVLKP G L ++EV SRF+    
Sbjct: 369 TVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE---- 428

Query: 251 GADPKKFIKAVCELGFVSALKDEKTSE---------GKDIDWP-------QLKPCLYKRR 295
             D + F++AV +LGF    KD   S          G  +  P       QL+PCLYKRR
Sbjct: 429 --DVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

[Close]

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q9DB85 (Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.8e-41
Identity = 112/300 (37.33%), Postives = 144/300 (48.00%), Query Frame = 0


Query: 11  RKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRARLSG 70
           R R K +   KNK      P+   P             K   + S + +   +M  RL G
Sbjct: 190 RNRQKNKRRHKNKFRPLQTPEQAPPKASIEETEVPPVPKSDSQESRAGALRARMTQRLDG 249

Query: 71  GHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLKEHDP 130
             FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K L++   
Sbjct: 250 ARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLRQKPA 309

Query: 131 SFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFSFDLVSKDPSV 190
           S +VADFGC                          GD RL+ +V+N V  FDL S DP V
Sbjct: 310 SLVVADFGC--------------------------GDCRLASSVRNPVHCFDLASLDPRV 369

Query: 191 IACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNG 250
             CDM+  PL+  SVDVAVFCLSLMG N   +L EA RVLK  G L ++EV SRF+    
Sbjct: 370 TVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE---- 429

Query: 251 GADPKKFIKAVCELGFVSALKD-----------EKTSEGK-----DIDWPQLKPCLYKRR 295
             D + F+ AV +LGF    KD           EKT   +      +   +L+PCLYKRR
Sbjct: 430 --DIRTFLGAVTKLGFKIIYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

[Close]

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q5U4F0 (Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-39
Identity = 110/304 (36.18%), Postives = 152/304 (50.00%), Query Frame = 0


Query: 11  RKRAKRRGADKNK----DSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRA 70
           R R K +   KNK    ++ + +P        ++  +  SD ++++    + +   +M  
Sbjct: 190 RNRQKNKRRHKNKFRPLETQDQVPLKASIEETEVPPAPKSDSQETR----AGALRARMTQ 249

Query: 71  RLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLK 130
           RL G  FR LNE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K L+
Sbjct: 250 RLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLR 309

Query: 131 EHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFSFDLVSK 190
           +   S +VADFGC                          GD RL+ +V+N V  FDL + 
Sbjct: 310 QKPASLVVADFGC--------------------------GDCRLASSVRNPVHCFDLAAL 369

Query: 191 DPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFD 250
           DP V  CDM+  PL+  SVDVAVFCLSLMG N   +L EA RVLKP G L ++EV SRF+
Sbjct: 370 DPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE 429

Query: 251 PSNGGADPKKFIKAVCELGFVSALKD-----------EKTSEGK-----DIDWPQLKPCL 295
                 D + F+ AV +LGF    KD           EKT   +      +   +L+PCL
Sbjct: 430 ------DIRTFLGAVTKLGFKVIYKDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCL 457

[Close]

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: O44410 (Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-39
Identity = 103/298 (34.56%), Postives = 149/298 (50.00%), Query Frame = 0


Query: 12  KRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRARLSGG 71
           K+ ++RG  K K        A E    D+  +                 + + + RL  G
Sbjct: 89  KKKRKRGPKKKKFKPEVAGKAAETENDDVAAAPE-----------EADPIAEAKKRLDAG 148

Query: 72  HFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLKEHDPS 131
            FR LNEKLYTCTG EA ++FKED   FD+YH G+ +Q+  WP  P+  II+WL+     
Sbjct: 149 RFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWLQSKPDQ 208

Query: 132 FIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNV--KNKVFSFDLVSKDPS 191
             V D GC                          G+A++++ V  K+K+ SFDLV+ +  
Sbjct: 209 QSVFDLGC--------------------------GEAKIAEAVGEKHKIRSFDLVAVNDR 268

Query: 192 VIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSN 251
           V +CDMS  P + +S D+ ++CLSLMG N   ++ EARRVLK  G L I+EV SRF    
Sbjct: 269 VESCDMSKLPAEDSSADIVIYCLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRF---- 328

Query: 252 GGADPKKFIKAVCELGFVSALKDEKTS-----EGKDIDWPQ--------LKPCLYKRR 295
                K+F +A+ ++GF  + + E T      E K ++  +        LKPCLYK+R
Sbjct: 329 --VSIKQFCEAITKMGFEQSHRRELTDYFMMMEFKKVEKVEQKRPYGLKLKPCLYKKR 343

[Close]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A1S3C8Q8 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.6e-139
Identity = 256/294 (87.07%), Postives = 264/294 (89.80%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG DKNKDST NLPDATE S QDIVVS+SSDGKK+QRVSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDK+LFD+YHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR 295
           VKSRFDPSNGGADP+KFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR
Sbjct: 241 VKSRFDPSNGGADPQKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR 268

[Close]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A5A7T472 (Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00030 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136
Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG DKNKDST NLPDATE S QDIVVS+SSDGKK+QRVSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDK+LFD+YHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADP+KFIKAVCELGFVSAL               KDEKTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPQKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A1S3C8U7 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136
Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG DKNKDST NLPDATE S QDIVVS+SSDGKK+QRVSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDK+LFD+YHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADP+KFIKAVCELGFVSAL               KDEKTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPQKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A0A0KUD5 (Ribosomal RNA-processing protein 8 OS=Cucumis sativus OX=3659 GN=Csa_5G523020 PE=3 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.9e-135
Identity = 254/309 (82.20%), Postives = 263/309 (85.11%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEG +++KRKRAKRRG +K+K STNNLPDATEP+ QDIVVSASSDGKK+ RVSGS+SF
Sbjct: 1   MADEGSSSRKRKRAKRRGTNKSKVSTNNLPDATEPTSQDIVVSASSDGKKTLRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADPKKFIKAVCELGFVSAL               KDEKTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A6J1FDA4 (Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111444708 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 5.6e-132
Identity = 246/309 (79.61%), Postives = 257/309 (83.17%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR+ KKRKRAKRR +DKNKD TN++PDATEPSGQDIVVS SSDGKKS+R SGS+SF
Sbjct: 1   MADEGRSNKKRKRAKRRRSDKNKDFTNSIPDATEPSGQDIVVSTSSDGKKSRRASGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYF ED+VLFDVYHTGYQEQM HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDS+SVDVAVFCLSLMGVNYASYL EARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMGVNYASYLTEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADP +F++AVCELGFVSAL               KDEK S GKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPNEFVRAVCELGFVSALKDFSNKMFILLYFKKKDEKISNGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_008458813.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X2 [Cucumis melo])

HSP 1 Score: 505.4 bits (1300), Expect = 3.4e-139
Identity = 256/294 (87.07%), Postives = 264/294 (89.80%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG DKNKDST NLPDATE S QDIVVS+SSDGKK+QRVSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDK+LFD+YHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR 295
           VKSRFDPSNGGADP+KFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR
Sbjct: 241 VKSRFDPSNGGADPQKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR 268

[Close]

BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_008458812.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037588.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa] >TYK09324.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 495.4 bits (1274), Expect = 3.5e-136
Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG DKNKDST NLPDATE S QDIVVS+SSDGKK+QRVSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSSQDIVVSSSSDGKKTQRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDK+LFD+YHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADP+KFIKAVCELGFVSAL               KDEKTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPQKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_004142786.1 (ribosomal RNA-processing protein 8 [Cucumis sativus] >KGN51356.1 hypothetical protein Csa_009025 [Cucumis sativus])

HSP 1 Score: 491.9 bits (1265), Expect = 3.9e-135
Identity = 254/309 (82.20%), Postives = 263/309 (85.11%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEG +++KRKRAKRRG +K+K STNNLPDATEP+ QDIVVSASSDGKK+ RVSGS+SF
Sbjct: 1   MADEGSSSRKRKRAKRRGTNKSKVSTNNLPDATEPTSQDIVVSASSDGKKTLRVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADPKKFIKAVCELGFVSAL               KDEKTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_038889651.1 (ribosomal RNA-processing protein 8 [Benincasa hispida])

HSP 1 Score: 491.1 bits (1263), Expect = 6.6e-135
Identity = 255/309 (82.52%), Postives = 263/309 (85.11%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR++KKRKRAKRRG++KNKDSTNNLPD T PS QDIVVS SSDG KSQ+VSGS+SF
Sbjct: 1   MADEGRSSKKRKRAKRRGSNKNKDSTNNLPDTTAPSRQDIVVSPSSDG-KSQKVSGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADPKKFIKAVCELGF+SAL               KD+KTSEGKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPKKFIKAVCELGFISALKDFSNKMFILLYFKKKDDKTSEGKDIDWPQ 282

[Close]

BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_022938486.1 (ribosomal RNA-processing protein 8-like [Cucurbita moschata])

HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131
Identity = 246/309 (79.61%), Postives = 257/309 (83.17%), Query Frame = 0


Query: 1   MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSF 60
           MADEGR+ KKRKRAKRR +DKNKD TN++PDATEPSGQDIVVS SSDGKKS+R SGS+SF
Sbjct: 1   MADEGRSNKKRKRAKRRRSDKNKDFTNSIPDATEPSGQDIVVSTSSDGKKSRRASGSSSF 60

Query: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNL 120
           LDKMRARLSGGHFRMLNEKLYTCTGEEALNYF ED+VLFDVYHTGYQEQM HWPELPVNL
Sbjct: 61  LDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNL 120

Query: 121 IIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFS 180
           IIKWLKEHDPSFIVADFGC                          GDARLSKNVKNKVFS
Sbjct: 121 IIKWLKEHDPSFIVADFGC--------------------------GDARLSKNVKNKVFS 180

Query: 181 FDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISE 240
           FDLVSKDPSVIACDMSNTPLDS+SVDVAVFCLSLMGVNYASYL EARRVLKPRGWLLISE
Sbjct: 181 FDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMGVNYASYLTEARRVLKPRGWLLISE 240

Query: 241 VKSRFDPSNGGADPKKFIKAVCELGFVSAL---------------KDEKTSEGKDIDWPQ 295
           VKSRFDPSNGGADP +F++AVCELGFVSAL               KDEK S GKDIDWPQ
Sbjct: 241 VKSRFDPSNGGADPNEFVRAVCELGFVSALKDFSNKMFILLYFKKKDEKISNGKDIDWPQ 283

[Close]

BLAST of Lsi02G015960 vs. TAIR 10
Match: AT5G40530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-85
Identity = 170/316 (53.80%), Postives = 210/316 (66.46%), Query Frame = 0


Query: 3   DEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGS----- 62
           +E +T++ RKR ++R    +K+     P  T P  Q+     +    K+Q+  GS     
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEE----PIETTPKNQN--EKKNQRDTKNQQHGGSSAPSK 63

Query: 63  ----TSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHW 122
               ++FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QM++W
Sbjct: 64  RPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNW 123

Query: 123 PELPVNLIIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKN 182
           PELPVN II WL  +  S +VADFGC                          GDAR++K+
Sbjct: 124 PELPVNSIINWLLSNSSSLVVADFGC--------------------------GDARIAKS 183

Query: 183 VKNKVFSFDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPR 242
           VKNKVFSFDLVSK+PSVIACDMSNT L+S+SVDVAVFCLSLMG NY+SY+ EA RVL+P 
Sbjct: 184 VKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPS 243

Query: 243 GWLLISEVKSRFDPSNGGADPKKFIKAVCELGFVSALKD---------------EKTSEG 295
           G LLI+EVKSRFDP+NGGADPK F+KAVC+LGF S LKD               +  S  
Sbjct: 244 GMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLKDFSNKMFILFHFKKKEQMNSNQ 287

[Close]

BLAST of Lsi02G015960 vs. TAIR 10
Match: AT5G40530.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 292.7 bits (748), Expect = 3.2e-79
Identity = 156/278 (56.12%), Postives = 194/278 (69.78%), Query Frame = 0


Query: 3   DEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGS----- 62
           +E +T++ RKR ++R    +K+     P  T P  Q+     +    K+Q+  GS     
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEE----PIETTPKNQN--EKKNQRDTKNQQHGGSSAPSK 63

Query: 63  ----TSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHW 122
               ++FLD +R RLSGG FRMLNEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QM++W
Sbjct: 64  RPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNW 123

Query: 123 PELPVNLIIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKN 182
           PELPVN II WL  +  S +VADFGC                          GDAR++K+
Sbjct: 124 PELPVNSIINWLLSNSSSLVVADFGC--------------------------GDARIAKS 183

Query: 183 VKNKVFSFDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPR 242
           VKNKVFSFDLVSK+PSVIACDMSNT L+S+SVDVAVFCLSLMG NY+SY+ EA RVL+P 
Sbjct: 184 VKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPS 243

Query: 243 GWLLISEVKSRFDPSNGGADPKKFIKAVCELGFVSALK 272
           G LLI+EVKSRFDP+NGGADPK F+KAVC+LGF S LK
Sbjct: 244 GMLLIAEVKSRFDPNNGGADPKDFVKAVCDLGFTSVLK 249

The following BLAST results are available for this feature:

BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JC0	3.2e-84	53.80	Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 ...	[more]
O43159	6.8e-42	37.00	Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2	[more]
Q9DB85	5.8e-41	37.33	Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1	[more]
Q5U4F0	1.9e-39	36.18	Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV...	[more]
O44410	2.4e-39	34.56	Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 ...	[more]

BLAST of Lsi02G015960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8Q8	1.6e-139	87.07	Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 ...	[more]
A0A5A7T472	1.7e-136	82.85	Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C8U7	1.7e-136	82.85	Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 ...	[more]
A0A0A0KUD5	1.9e-135	82.20	Ribosomal RNA-processing protein 8 OS=Cucumis sativus OX=3659 GN=Csa_5G523020 PE...	[more]
A0A6J1FDA4	5.6e-132	79.61	Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111444708...	[more]

BLAST of Lsi02G015960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458813.1	3.4e-139	87.07	PREDICTED: ribosomal RNA-processing protein 8 isoform X2 [Cucumis melo]	[more]
XP_008458812.1	3.5e-136	82.85	PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037...	[more]
XP_004142786.1	3.9e-135	82.20	ribosomal RNA-processing protein 8 [Cucumis sativus] >KGN51356.1 hypothetical pr...	[more]
XP_038889651.1	6.6e-135	82.52	ribosomal RNA-processing protein 8 [Benincasa hispida]	[more]
XP_022938486.1	1.2e-131	79.61	ribosomal RNA-processing protein 8-like [Cucurbita moschata]	[more]

BLAST of Lsi02G015960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40530.1	2.3e-85	53.80	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT5G40530.2	3.2e-79	56.12	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042036	Ribosomal RNA-processing protein 8, N-terminal domain	GENE3D	1.10.10.2150		coord: 64..114 e-value: 1.8E-25 score: 90.8
IPR007823	Ribosomal RNA processing protein 8	PFAM	PF05148	Methyltransf_8	coord: 164..276 e-value: 8.6E-31 score: 107.5 coord: 62..139 e-value: 9.1E-27 score: 94.3
IPR007823	Ribosomal RNA processing protein 8	PANTHER	PTHR12787	UNCHARACTERIZED	coord: 9..139 coord: 166..294
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 162..294 e-value: 3.2E-39 score: 136.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	CDD	cd02440	AdoMet_MTases	coord: 190..239 e-value: 0.00143306 score: 35.4835
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 99..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G015960.1	Lsi02G015960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008168	methyltransferase activity