
Lsi02G015960 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAAAATCCCAATTCCCACACCAACGATCGCCCTAGTTCCATTCTGCTTCGTCTCTGCTCTACTCTTTTTCAGCTCGTCTTCTCCCAACGCGAATTGTTTCATCAAGGTTTCCTAGCAAAAAACAACAATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGGTTCGACTTCTTTTAGAAAGTAACCTCGTTTTGGAATCAATTGTTGCTGAAGAACTTTAAGGATTATAATTTATGCATTGTGGTTGGGTGATGATGCAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACGTAATGATTTTTTCTTCTATTCTTTTATTTTCCCATCCTGTGTTTTTGGTTTTTATTGCTGGGCATGTGCTTTTGTATATGTATGTTCTAAATTTTGAGTCAGATTACCCATATTATTGGTATGTTACCTTGAATTATTGTTGGCTTCAAAATTTCAGTTTCCTATCAGTTGTTTTAAAATTGAACTGTTATGCTTAAGTTTTATTAATCTAGCTCATAGTCAGCGTTACGTTATTTGAAGCCAATTGATCTTATTTTTCGTCTTCTGTGTTTCAGAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGGTAAGTCTTGTCTCTGTTCCTACCTAATAGTAGATGTTACTATTTTAAGAACTCGTTTCTTCAGGCACGCACACGGCAGAAGATCATATCTCAGTCTCTCTCTCTTTGCAAAACCTTTTCAATAGAAGAAACTTTACCACTGACTTATAAATTATAATCATCAATCTTGTAAATATGGGATTTTTTCTATGTATACAATGTCTTAAAAGAATTTTTAGACTTCACATCTTGAGGCTCGCCTTAGGCGAGGCTCTAACTCTTAGCATGGAGACTCACATCTCCTTTCACTTCTTATGCCTCTTGTAGAAGAAGCTTACCACTTTGTGCAACTTAAGTCTCTATGCCTTGTGTAATAATTAGAAGAATAATGTTAATTTGCCTCATTCTTTAAAACTATGCAAGTTTGAGTTGTGAGAATTTGAACTAGTACTAATTTTGCTATTGTGACTTTAAAAGCATTGAAGACAAAAACCATCATAGGTATCCTACGGGTTTTCTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTGTCCATGAAATTAGTTGAGGTGCGCATAAGCTGGCCCGGACACTCATGGATATATAAAAAAAAAAAAAAAGAAGAAAAGCATTAAAGACAAAAATTTATAGGATAAGTCAATCCTATTAATGATACAATAGTGAGTTGTATAAGATAAGATATTTAAAAAAAAAAAATTCATTGACTATTATGCTTATAAATGTTTGGCCTTACCAATTTAAGATTTGTAAAAAAAATTCATTTATACGGCCTAGGACTAGGGTTAACTAACATTTTGATGGCTAGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGGTGAGTTTTAGGGAGAAAAACCTTTTTCCCCCTTGATTCCTTTAACTAACTATTGATCAAGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATGTACGTGCACTGTATCTGAATTTAATGTCGTATAATGCATCGAGACATACAACTGCATTTCTTGCATGAAAATTAGTTATATTGATAATATTTTTCACTTGCCGGTGATCTTGTTGCTTTCATATAAATTTTTATTGTTAGGCTAAAGCTCATTTATTACTACTTATTTTCTTATTGACTAACAAGTTATTGGAAAGGTTTTACATTTTTTTTCTTCCCCAACATGTGGTAATTTATTGATATTGGTTAGGTTCAACCATGGGAGAATAAGTCATTGGTGAATTGCTATTAGTGATTGGAGGGAGGGACAGAAAGTGGATGATAACTTGTATAATACATTAATGTCAACGATCACAATCATTATTACAAGCAGCTATTGTTTAGAGTAATTGGATGTATAATGATCTATTTTATTGCATAGTTGCAGTTTTCGAATGATATTAGATATCAATATTGAGAAATTTTGAGGACTTGCTAAGATTGGTTGGATATTTGATGTGGCTGTGCTTTGAAACATGTGGCCTTGCTATATGTTCACTCTATAATTGCCGCTGTTCATGACTATAGATATGCCCATAGGAGCATTAGTACATTATATCCATCTCTTTCATTTGTCCATGAAATTTATATTAGACTCCTTGGCTGTTGTCTTCAAGTAAGAAAAAAAGCTCTAAAAGCTGGTTAATGTTTATGCCACTGGCAGACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGGTTTGTGGCCTATTTTTGGCTCTTTCCTTTAGTTTTGTAGCCTGATAAAACTTCTCTATCATGTGGCAACTGAACTTTTAGTGTTTCTAAATGCAGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGTATATTTATTTTCTGTTATTTAGCTATAGCTATAGCTATAGCTAGCATTGTCTGTTCCTTTCTTGCAGCTAATTAATAAGTATCATGTGCAGGACTTCTCAAATAAGATGTTTATTTTGTTATACTTCAAGAAAAAGGTTTGTAAATGTTCTGAGTACCTTATTGAAATTCTAACTGTTGTTATCCTCTCGGTTTAATCATTATTTTGCCTCTTTTATGCAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGAGTTGAGTTTGCATTTTTTTTTCTCCTTTTGTAGTTTTGTTATGTTAAAATAAACTCCTATACAAGCACTTGCTATTAGCTTCTTTCTATGTTATATAATCTTATTGGAAATCATTTTGTAGTTCATTGATGTTGTCAAATGAAATGTTGGGTTTAGTTGAGCAATTACTGAAGTCTGAAGCTTTCTTG CTAAAATCCCAATTCCCACACCAACGATCGCCCTAGTTCCATTCTGCTTCGTCTCTGCTCTACTCTTTTTCAGCTCGTCTTCTCCCAACGCGAATTGTTTCATCAAGGTTTCCTAGCAAAAAACAACAATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGAGTTGAGTTTGCATTTTTTTTTCTCCTTTTGTAGTTTTGTTATGTTAAAATAAACTCCTATACAAGCACTTGCTATTAGCTTCTTTCTATGTTATATAATCTTATTGGAAATCATTTTGTAGTTCATTGATGTTGTCAAATGAAATGTTGGGTTTAGTTGAGCAATTACTGAAGTCTGAAGCTTTCTTG ATGGCGGACGAAGGCCGCACAACCAAGAAGCGGAAGAGGGCGAAGCGTCGTGGAGCGGACAAAAACAAAGATTCTACCAATAATCTACCGGATGCTACTGAGCCCAGTGGCCAAGACATCGTTGTTTCTGCTTCTTCCGACGGCAAAAAATCTCAGAGGGTTTCCGGCTCGACTAGTTTCCTCGATAAGATGCGAGCTCGTTTGTCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGGGAAGAGGCGCTTAATTATTTCAAAGAAGACAAGGTTCTGTTTGATGTGTATCATACAGGATACCAAGAGCAAATGACGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTCAAGGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGTATTTGACACTTTTAAGGACCTTCATTCTTATTTTGTCATTTTTCTCCTCTTTTTTTCCCCTTCAAATTTAATTACAGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCTTCTGTCATTGCCTGTGATATGTCAAATACACCTCTTGACTCTGCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAATTTATAAAGGCTGTTTGTGAGCTAGGTTTCGTCTCAGCTTTGAAGGATGAGAAAACTTCTGAGGGGAAAGATATTGATTGGCCCCAACTAAAACCTTGTCTGTATAAACGTCGCTGA MADEGRTTKKRKRAKRRGADKNKDSTNNLPDATEPSGQDIVVSASSDGKKSQRVSGSTSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVNLIIKWLKEHDPSFIVADFGCVFDTFKDLHSYFVIFLLFFSPSNLITGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCELGFVSALKDEKTSEGKDIDWPQLKPCLYKRR Homology
BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q84JC0 (Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 3.2e-84 Identity = 170/316 (53.80%), Postives = 210/316 (66.46%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: O43159 (Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2) HSP 1 Score: 172.6 bits (436), Expect = 6.8e-42 Identity = 111/300 (37.00%), Postives = 145/300 (48.33%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q9DB85 (Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 5.8e-41 Identity = 112/300 (37.33%), Postives = 144/300 (48.00%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: Q5U4F0 (Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.9e-39 Identity = 110/304 (36.18%), Postives = 152/304 (50.00%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy Swiss-Prot
Match: O44410 (Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 PE=3 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 2.4e-39 Identity = 103/298 (34.56%), Postives = 149/298 (50.00%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A1S3C8Q8 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 1.6e-139 Identity = 256/294 (87.07%), Postives = 264/294 (89.80%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A5A7T472 (Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00030 PE=3 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136 Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A1S3C8U7 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136 Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A0A0KUD5 (Ribosomal RNA-processing protein 8 OS=Cucumis sativus OX=3659 GN=Csa_5G523020 PE=3 SV=1) HSP 1 Score: 491.9 bits (1265), Expect = 1.9e-135 Identity = 254/309 (82.20%), Postives = 263/309 (85.11%), Query Frame = 0
BLAST of Lsi02G015960 vs. ExPASy TrEMBL
Match: A0A6J1FDA4 (Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111444708 PE=3 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 5.6e-132 Identity = 246/309 (79.61%), Postives = 257/309 (83.17%), Query Frame = 0
BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_008458813.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X2 [Cucumis melo]) HSP 1 Score: 505.4 bits (1300), Expect = 3.4e-139 Identity = 256/294 (87.07%), Postives = 264/294 (89.80%), Query Frame = 0
BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_008458812.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037588.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa] >TYK09324.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 495.4 bits (1274), Expect = 3.5e-136 Identity = 256/309 (82.85%), Postives = 264/309 (85.44%), Query Frame = 0
BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_004142786.1 (ribosomal RNA-processing protein 8 [Cucumis sativus] >KGN51356.1 hypothetical protein Csa_009025 [Cucumis sativus]) HSP 1 Score: 491.9 bits (1265), Expect = 3.9e-135 Identity = 254/309 (82.20%), Postives = 263/309 (85.11%), Query Frame = 0
BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_038889651.1 (ribosomal RNA-processing protein 8 [Benincasa hispida]) HSP 1 Score: 491.1 bits (1263), Expect = 6.6e-135 Identity = 255/309 (82.52%), Postives = 263/309 (85.11%), Query Frame = 0
BLAST of Lsi02G015960 vs. NCBI nr
Match: XP_022938486.1 (ribosomal RNA-processing protein 8-like [Cucurbita moschata]) HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131 Identity = 246/309 (79.61%), Postives = 257/309 (83.17%), Query Frame = 0
BLAST of Lsi02G015960 vs. TAIR 10
Match: AT5G40530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ) HSP 1 Score: 313.2 bits (801), Expect = 2.3e-85 Identity = 170/316 (53.80%), Postives = 210/316 (66.46%), Query Frame = 0
BLAST of Lsi02G015960 vs. TAIR 10
Match: AT5G40530.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ) HSP 1 Score: 292.7 bits (748), Expect = 3.2e-79 Identity = 156/278 (56.12%), Postives = 194/278 (69.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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