Lsi02G015900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G015900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cyclin-dependent protein kinase inhibitor SMR6-like
Location	chr02: 21789005 .. 21789322 (+)
RNA-Seq Expression	Lsi02G015900
Synteny	Lsi02G015900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGATTTCAAATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGGGGAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGCCATCGTTGAAGCCGATTAGCACGAAATCGAAGGCAAAAGACGGTGAAGACGATGGCGAGAAGACGCCGACAGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGGTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTCCGAGTTTAA

mRNA sequence

ATGTTTGGATTTCAAATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGGGGAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGCCATCGTTGAAGCCGATTAGCACGAAATCGAAGGCAAAAGACGGTGAAGACGATGGCGAGAAGACGCCGACAGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGGTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTCCGAGTTTAA

Coding sequence (CDS)

ATGTTTGGATTTCAAATGGGATTCTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGGGGAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGCCATCGTTGAAGCCGATTAGCACGAAATCGAAGGCAAAAGACGGTGAAGACGATGGCGAGAAGACGCCGACAGCGAAAGAAGCTAGAATACCGGAGAAACTGGGTTGCCCGCCGGCGCCGAGAAAGCGTAGATCTCTAAAATCAAGGTCTAATCAAAATCATATGAGGGAGTTCTTTAATCCTCCTGATTTAGAATCTGTGTTCAAGCTCCGAGTTTAA

Protein sequence

MFGFQMGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV

Homology

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BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 64/113 (56.64%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAK------------DGEDDGE 65
           MGFSKKSQ +GG E++GKKWVIAG+  R SLKP+ TK +A             + E++  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 66  KTPTAKEARIPEKLGCPPAPRKRR-SLKSRSNQNHMREFFNPP-DLESVFKLR 105
            TPTAKE +IPE L CPPAPRKRR +LK RSN   +REFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-12
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 6   MGFSKKS--QIDGGFE--AEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGE---KTPTA 65
           MGFS K+  Q D  F    EGKK VI G+    ++KPIS  S A    +D +    TPTA
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTA 60

Query: 66  KEARIPEKLGCPPAPRKRR-SLKSRSNQNHMREFFNPPDLESVFKLR 105
              RIP  + CPPAP+KR+ +LK        REFF+PPDLE+VF  R
Sbjct: 61  DSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYR 104

[Close]

BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 6   MGFSKK--SQIDGGF--EAEGKKWVIAGLPARPSLKPISTKS----KAKDGEDDGEKTPT 65
           MG+S K   Q+DG      +GKKWVIAG+P+R  LK I+          + +D    TPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 66  AKEARIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           A   RIP    CP AP+KR+     S     R++F+PPDLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTK--SKAKDGEDDGEKTPTAKEARI 65
           MG SKKSQ+    + +GKK++ A    R SLKP+ TK     ++ ED    TPTA+ A+ 
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDGICITPTARGAKT 60

Query: 66  PEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           PE   CP APRKR  +    N   +  F  P D E VF
Sbjct: 61  PE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 55  TPTAKEARIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           TP AK++RIPE L CPPAP+K+R  K+   +     FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQID GFEAE KKWVIAGL AR SLKPI+TKSK K+GE+DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQID GFEAE KKWVIAGL AR SLKPI+TKSK K+GE+DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL
Match: A0A0A0KUE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQID GFE E KKWVIAGL AR SLKPI+TKSK K+GEDDG+KTPT KEARIPE
Sbjct: 1   MGFSKKSQIDTGFEPEPKKWVIAGLSARSSLKPINTKSKTKEGEDDGDKTPTGKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 91/104 (87.50%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEK----TPTAKEA 65
           MGFSKKSQIDGG EAEGKKWVIAGLPAR SLKPISTKS+AKDGEDD EK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDDCEKSRSTTPTAKEA 60

Query: 66  RIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           RIPEKL CP APRKRRSLKS SNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEK----TPTAKEA 65
           MGFSKKSQIDGGFE EGKKWVIAGLPAR SLKPI+TK +AKDGEDDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDDGEKSHSTTPTAKEA 60

Query: 66  RIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           RIPEKL CP APRKRRSLKS SNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

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BLAST of Lsi02G015900 vs. NCBI nr
Match: XP_038890813.1 (cyclin-dependent protein kinase inhibitor SMR6 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 2.3e-45
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQIDGGFEAEGKKWVIAGLP R SLKPISTKSKAKDGEDDGEKTPTAKEARIPE
Sbjct: 1   MGFSKKSQIDGGFEAEGKKWVIAGLPTRSSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQN++REFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNYIREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. NCBI nr
Match: XP_008458799.1 (PREDICTED: uncharacterized protein LOC103498100 [Cucumis melo] >KAA0037576.1 uncharacterized protein E6C27_scaffold277G002090 [Cucumis melo var. makuwa] >TYK03096.1 uncharacterized protein E5676_scaffold374G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQID GFEAE KKWVIAGL AR SLKPI+TKSK K+GE+DGEKTPT KEARIPE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDGEKTPTGKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. NCBI nr
Match: XP_004142790.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucumis sativus] >KGN51361.1 hypothetical protein Csa_008029 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEKTPTAKEARIPE 65
           MGFSKKSQID GFE E KKWVIAGL AR SLKPI+TKSK K+GEDDG+KTPT KEARIPE
Sbjct: 1   MGFSKKSQIDTGFEPEPKKWVIAGLSARSSLKPINTKSKTKEGEDDGDKTPTGKEARIPE 60

Query: 66  KLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           KLGCPPAPRKRRSLKS SNQNHMREFFNPPDLESVFKLRV
Sbjct: 61  KLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Lsi02G015900 vs. NCBI nr
Match: KAG7016206.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEK----TPTAKEA 65
           MGFSKKSQIDGGFE EGKKWVIAGLPAR SLKPI+TKS+AKDGEDDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60

Query: 66  RIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           RIPEKL CP APRKRRSLKS SNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Lsi02G015900 vs. NCBI nr
Match: KAG6578666.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGEK----TPTAKEA 65
           MGFSKKSQIDGGFE EGKKWVIAGLPAR SLKPI+TKS+AKDGEDDGEK    TPTAKEA
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDDGEKSRSTTPTAKEA 60

Query: 66  RIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVFKLRV 106
           RIPEKL CP APRKRRSLKS SNQNH REFFNPPDLESVFK+RV
Sbjct: 61  RIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Lsi02G015900 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-24
Identity = 64/113 (56.64%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTKSKAK------------DGEDDGE 65
           MGFSKKSQ +GG E++GKKWVIAG+  R SLKP+ TK +A             + E++  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 66  KTPTAKEARIPEKLGCPPAPRKRR-SLKSRSNQNHMREFFNPP-DLESVFKLR 105
            TPTAKE +IPE L CPPAPRKRR +LK RSN   +REFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Lsi02G015900 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 6   MGFSKKS--QIDGGFE--AEGKKWVIAGLPARPSLKPISTKSKAKDGEDDGE---KTPTA 65
           MGFS K+  Q D  F    EGKK VI G+    ++KPIS  S A    +D +    TPTA
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTA 60

Query: 66  KEARIPEKLGCPPAPRKRR-SLKSRSNQNHMREFFNPPDLESVFKLR 105
              RIP  + CPPAP+KR+ +LK        REFF+PPDLE+VF  R
Sbjct: 61  DSVRIPTVIPCPPAPKKRKLTLKVSYGP---REFFSPPDLETVFIYR 104

[Close]

BLAST of Lsi02G015900 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 6   MGFSKK--SQIDGGF--EAEGKKWVIAGLPARPSLKPISTKS----KAKDGEDDGEKTPT 65
           MG+S K   Q+DG      +GKKWVIAG+P+R  LK I+          + +D    TPT
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 66  AKEARIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           A   RIP    CP AP+KR+     S     R++F+PPDLE+VF
Sbjct: 61  AVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Lsi02G015900 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAEGKKWVIAGLPARPSLKPISTK--SKAKDGEDDGEKTPTAKEARI 65
           MG SKKSQ+    + +GKK++ A    R SLKP+ TK     ++ ED    TPTA+ A+ 
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDGICITPTARGAKT 60

Query: 66  PEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           PE   CP APRKR  +    N   +  F  P D E VF
Sbjct: 61  PE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Lsi02G015900 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 55  TPTAKEARIPEKLGCPPAPRKRRSLKSRSNQNHMREFFNPPDLESVF 102
           TP AK++RIPE L CPPAP+K+R  K+   +     FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Lsi02G015900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	5.6e-23	56.64	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	4.5e-12	46.73	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SAD3	2.2e-11	42.31	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LVX6	4.2e-10	41.84	Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4IWB3	1.5e-04	48.94	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi02G015900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY33	1.5e-42	90.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C883	1.5e-42	90.00	uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=...	[more]
A0A0A0KUE2	7.4e-42	89.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523070 PE=4 SV=1	[more]
A0A6J1JVL3	1.1e-40	87.50	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FHD8	1.8e-40	86.54	cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Lsi02G015900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890813.1	2.3e-45	95.00	cyclin-dependent protein kinase inhibitor SMR6 [Benincasa hispida]	[more]
XP_008458799.1	3.1e-42	90.00	PREDICTED: uncharacterized protein LOC103498100 [Cucumis melo] >KAA0037576.1 unc...	[more]
XP_004142790.1	1.5e-41	89.00	cyclin-dependent protein kinase inhibitor SMR6 [Cucumis sativus] >KGN51361.1 hyp...	[more]
KAG7016206.1	3.4e-41	87.50	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
KAG6578666.1	3.4e-41	87.50	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]

BLAST of Lsi02G015900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	4.0e-24	56.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	3.2e-13	46.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	1.6e-12	42.31	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G27630.1	3.0e-11	41.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G20898.1	1.1e-05	48.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..93
None	No IPR available	PANTHER	PTHR33142:SF40	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR6-RELATED	coord: 6..104
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 6..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G015900.1	Lsi02G015900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus