Lsi02G014580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G014580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein 230
Location	chr02: 20301306 .. 20303823 (+)
RNA-Seq Expression	Lsi02G014580
Synteny	Lsi02G014580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAGCCGTCGGCCCAACTCGAAATCGAAGATCCTGAACCCAGTCAAACATTTTGATTTTATTTCTTTGAGCACCTCCTTTCATCTCTGTTGAATCAAAGAAACGACGACTTTTTCCTCGACCTCCAGGCTCCGGTGAGATTTCAAGACTCTTCAACTTCACCAGTTTTCTGAGATTTCACTATCGATTCTGCATCGCCTTCTTCCTCCGCTGTTATTTTGTGCGTTTTGCGTTTTCTATTCCAGGTACACTCTCCTACTTTTGCTCTGAATTGTAGGGTTTCAATTGATACTTTTAATGGCTTCAGTTGCTGATTATTTGGGAGTTCGTTAGATTTTTATGTATATTCATTCTACATCTGATTGAGGGAAATAAGGATTTGTATATGGCGAGTAATTGTTTTCATTGGATTGAAATGAATTATTTAGGATTGAAGTTCTTGTTAGGTTTCGTCGTAAAGAAGAAGGAAAATTCTATCCCATTTCTCTCCTTCGATCTCTTCTCTTTCTCATTCTTTCTCTTCCTCTTACCCAGACCATATCCGCCGCCCTCTTCCTCTCCAGCGTTCCCTCCCTCTCTCATTAGTGAACGGCGGCCCATTTTAAACACACACGAACATATCTGAGATCCATGCCCACGCCCGCTGACGCACGAACGTTCGCCTCTCTACGAGTTGAGTAAACAGCGTAGAAGTTTAGTTGGTTTTAATGACCCCTGTTGTTTTATATGAGTTCAATTAAGTATGAAAATTTAGTAATACTCCCTAATTTAGGCTGAAATTTGGGGTCATTACATTGACAATCATGTGAAAATTATGTAATTTTCATCTTCCTCTTGATGTCTTTTTAATGTATTTGATTCTTGATTTCGAAGGTGGCTTGATTTACTTGAAATTTGAAGACTGCATTCTTGATATTCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGTATTGATGGAATTTTCTGTTTCGTAATTTAATTGAATGCTGTTTTTTATTATTTATTTTCATTGTGTGCAAAGTGTACTCATTTGGCTTTTGTTTGTTTCTGAAATTATTACATACAATATGGCTCCGGTGTGCCAACATGAGCATAACTACTCTTGAGGCGGTTCAAATTCCCATATAAGACCTGGTGTATAGGGTTCTTTATTGACCTGATTGATAGTGATGAATTGGTTTTAACAATCAAAGAAGATGTAATCCAATGGCATGAGGTCATGTATAATACTGATAGAATATAGAAAGAGGGAAAATCCGGCCGAAGGAATTATGAATACACTCCCATTGGCAAAGTCGATGGTGGGAGAAGATTTTACTAAAAATTGTGATTATTCCTTTTGTAGGAAGCTTGAAAGTTGAAAGTATATTAAATTTCCACAAAGAAAGTTTGTATCAAGAAATTTCTAACATATGGACCACTTTTCATGTAAAGAGTATTCACTGATAGTTTTGTGCTCTACCCAATTTTAGTCACTGTTAATGTAATTTTGGTTCGTAGATCTCATGCAACTGTTGTACTTGCTTGCTTCTGCCATCCTGTCCCTGGTCTTGGACATTCTAGTTCCTAGAGTTTATTTGTTATTTATTTTCTTCTTTTTCTTTACATAATGCCAAATGTATCCAGAAATCTAAAATGGAGTGTAAATCAAAGTTTTGTTATCGTTGAATATGACATCAGTAGAAGTGCCGTTGACTTATCCTGTCCAAGAAGTTTGATAAGCTGAGCAACATTTGCTTTGTTGTTGCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGTATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCACGTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCATTCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTGTAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTCGAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTACATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACTAGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAATTGATTACAGGCCAAC

mRNA sequence

CTAAAAGCCGTCGGCCCAACTCGAAATCGAAGATCCTGAACCCAGTCAAACATTTTGATTTTATTTCTTTGAGCACCTCCTTTCATCTCTGTTGAATCAAAGAAACGACGACTTTTTCCTCGACCTCCAGGCTCCGGTGAGATTTCAAGACTCTTCAACTTCACCAGTTTTCTGAGATTTCACTATCGATTCTGCATCGCCTTCTTCCTCCGCTGTTATTTTGTGCGTTTTGCGTTTTCTATTCCAGACCATATCCGCCGCCCTCTTCCTCTCCAGCGTTCCCTCCCTCTCTCATTAGTGAACGGCGGCCCATTTTAAACACACACGAACATATCTGAGATCCATGCCCACGCCCGCTGACGCACGAACGTTCGCCTCTCTACGAGTGGCTTGATTTACTTGAAATTTGAAGACTGCATTCTTGATATTCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGTATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCACGTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCATTCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTGTAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTCGAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTACATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACTAGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAATTGATTACAGGCCAAC

Coding sequence (CDS)

ATGGCATCTAGACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAA

Protein sequence

MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY

Homology

[Close]

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot
Match: Q5ZLH4 (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS LA  DD  +D +  +  P          KIP+K+IALA+ L ++G+ L+ +   +
Sbjct: 17  VKYSKLASTDDGYIDLQFKKSPP----------KIPYKAIALAVVLFMIGTFLIIIGALL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LAGYISKGGTDRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot
Match: Q96A57 (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 7   VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVL 66
           V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDD------GYIDLQFKKTP---PKIPYKAIALATVLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot
Match: Q8CIB6 (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS LA  DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLASTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot
Match: Q5R8X3 (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-13
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 7   VRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVL 66
           V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDD------GYIDLQFKKTP---PKIPYKAIALATGLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot
Match: Q5BJP5 (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-13
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSL-APDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFV 66
           V+YS L + DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLSSTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL
Match: A0A1S3C9X7 (Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103498508 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNIRYSSLASDDNDVDSEGSRFDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL
Match: A0A6J1HAY7 (Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111462418 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.4e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL
Match: A0A6J1JQW3 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111487526 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.8e-55
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRR+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF
Sbjct: 1   MASRRSVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGY FASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYCFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL
Match: A0A0A0KXG1 (Transmembrane protein 230 OS=Cucumis sativus OX=3659 GN=Csa_5G637760 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYS L  DDND+DSEG++ DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNVRYSPLTSDDNDIDSEGNQSDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL
Match: A0A6J1K312 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111489607 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-54
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYSSL+ DDNDLD +G+++DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLF
Sbjct: 1   MASRRNVRYSSLSTDDNDLDLDGNQFDPRFYYTPKAFDKIPWKSIALAIFLLFLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: XP_008459349.1 (PREDICTED: transmembrane protein 230 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNIRYSSLASDDNDVDSEGSRFDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: XP_023521905.1 (transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >XP_023521962.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: XP_022961740.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022961747.1 transmembrane protein 230-like [Cucurbita moschata] >KAG6602515.1 Transmembrane protein 230, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033189.1 Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 7.0e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: XP_038889462.1 (transmembrane protein 230 [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 7.8e-55
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRRNVRY SLA DDNDLDSEGS YDPRFYYTPKAFDKIPWKSIALA+FLL+LG LLLF
Sbjct: 1   MASRRNVRYRSLATDDNDLDSEGSPYDPRFYYTPKAFDKIPWKSIALAIFLLVLGILLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. NCBI nr
Match: XP_022990725.1 (transmembrane protein 230-like [Cucurbita maxima] >XP_022990726.1 transmembrane protein 230-like [Cucurbita maxima] >XP_022990727.1 transmembrane protein 230-like [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 7.8e-55
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60
           MASRR+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF
Sbjct: 1   MASRRSVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGY FASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYCFASIPDY 116

[Close]

BLAST of Lsi02G014580 vs. TAIR 10
Match: AT3G29170.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 160.6 bits (405), Expect = 7.5e-40
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MASRRNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLG 60
           MASRR+VRY+ L  D++D        E   +DPRF Y+PKAFD++PWKSIALA+FLL LG
Sbjct: 1   MASRRSVRYAQLPGDEDDEGYGNGVGERRDFDPRFDYSPKAFDRVPWKSIALAVFLLFLG 60

Query: 61  SLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPD 117
            LLL LS+F+  GHM G+ SQ Y LL LG LTFLPGFYETRIAYY+WRGA GYRFA+IP 
Sbjct: 61  CLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAIPS 120

[Close]

BLAST of Lsi02G014580 vs. TAIR 10
Match: AT2G19350.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 41  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

[Close]

BLAST of Lsi02G014580 vs. TAIR 10
Match: AT4G29850.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 41  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

The following BLAST results are available for this feature:

BLAST of Lsi02G014580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZLH4	2.0e-13	40.18	Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1	[more]
Q96A57	2.0e-13	41.44	Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1	[more]
Q8CIB6	2.0e-13	41.07	Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1	[more]
Q5R8X3	3.4e-13	41.44	Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1	[more]
Q5BJP5	4.5e-13	40.18	Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1	[more]

BLAST of Lsi02G014580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9X7	1.2e-56	95.69	Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103498508 PE=3 SV=1	[more]
A0A6J1HAY7	3.4e-56	96.55	Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111462418 PE=3 SV=...	[more]
A0A6J1JQW3	3.8e-55	95.69	Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111487526 PE=3 SV=1	[more]
A0A0A0KXG1	1.9e-54	93.10	Transmembrane protein 230 OS=Cucumis sativus OX=3659 GN=Csa_5G637760 PE=3 SV=1	[more]
A0A6J1K312	5.4e-54	91.38	Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111489607 PE=3 SV=1	[more]

BLAST of Lsi02G014580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459349.1	2.4e-56	95.69	PREDICTED: transmembrane protein 230 [Cucumis melo]	[more]
XP_023521905.1	2.4e-56	97.41	transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >XP_023521962.1 tran...	[more]
XP_022961740.1	7.0e-56	96.55	transmembrane protein 230-like [Cucurbita moschata] >XP_022961747.1 transmembran...	[more]
XP_038889462.1	7.8e-55	94.83	transmembrane protein 230 [Benincasa hispida]	[more]
XP_022990725.1	7.8e-55	95.69	transmembrane protein 230-like [Cucurbita maxima] >XP_022990726.1 transmembrane ...	[more]

BLAST of Lsi02G014580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29170.1	7.5e-40	65.29	Eukaryotic protein of unknown function (DUF872)	[more]
AT2G19350.1	1.9e-11	43.24	Eukaryotic protein of unknown function (DUF872)	[more]
AT4G29850.1	3.3e-11	43.24	Eukaryotic protein of unknown function (DUF872)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Transmembrane protein 230/134	PFAM	PF05915	DUF872	coord: 40..116 e-value: 6.4E-26 score: 90.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR15664:SF0	TRANSMEMBRANE PROTEIN 230	coord: 1..116
IPR044234	Transmembrane protein 230	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G014580.1	Lsi02G014580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005776	autophagosome
cellular_component	GO:0005768	endosome
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane