Lsi02G014540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G014540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L9, chloroplastic
Location	chr02: 20225909 .. 20233332 (-)
RNA-Seq Expression	Lsi02G014540
Synteny	Lsi02G014540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACACTCTAGAGATAAGATTGCAGCAGGAGCGATATAAAGAAGAAGGAACTGCAAAGTGAGAGGAGCGTCAGTGTGTGAAAAATTGAAATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGGTAATGGTCAAAAATGGGTTTTTCAAATTCCTCCCTAATGGCTTTTCTCTGTGGCTGTTTTTCTTTTTCTTTCTTTCTCTCTGTTGGGTGTTAGTGATTGCAATTGTAATTTGGTTTTGTGGTCTGTGGAATTGGGGCAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGTAATGACTTACATAACCCATTTAGTTTGTTTTATCTATAATATTTATGTTCTCAAAGTTGTGTTGAGGATTTCACATCAAAAAGAATTTAGGGACCTCACACTTTTTATATGATAGATGGACTACTCCTCTCATTGCCAATTGGTTTTGAGATGAAACTTGTGTTATCTAATGTGGTATTATCAGAGTCTATAAAGCTTAAACGAGTATTCGGTCTAATGAAAAAGCAATTGTGATCCGATCAAGAAATGGTGAACCCAAAAGAGGCACCATCTAGAGGGACATGTTGAGGATCCCACATTGGAAAAATCAAGAGTCCTCACATTTTTTATAAGACAAATCGGCTACTCCTCTTACTGCTAATTAGTTTTGAGATGGAACTCCATGTTATCTAATAAGTTGTACTAGTGCAAATGATCTTACTGAATCCCAACAAGGGATTTTAGAAATGTTGGTAATCAGGAGGGAATTGGAAGTGTGACCAAATAGTTGTTAGTTAGTTGCTGAGTCAGAGTGGTTATTGATTGGTTGTTTTTAACTAAATTTGTCTAGCTGGTTAATGGAGAGTGTAATGAACAAATATTCTGGTGTATACAGTCAATGAATGAGAATGACAAGGATACTTTGATTTAAGAGTGGAAGTTTCGTGGTATCAGGCTCTGAGTGATAAGCTTCCTTTCACTCTCCCTTCCTTTGCCACCCCTTTGATTTCAATCTCAAACAATGCATGCCATGTCTAATATCTGCAATATGATCCCTATTTAAATGGATTTTTGGGCAATTTCATCCTGTGGAAATATCTGATTACTTTCATTCTGGTAGTTCACAAGTTCATTTTTGTAGTGGGAAGCCTACTGAAATCCAATCCCTTTTTTCCAGCATTGGCAGCTAGTTGAATCTCCCAAATTAACCACATGTCTAAGAAATTGGTTTCTTAAGATTAGAAATATAGTAGAATCAAGTAGTTTTCCTATGAGAATAGTTGAGGTGTGTGCAAGTTGACATGGATTGTTTCGGACATCCAAAAAAAGGAAGAAAAAAGAGAGGCTGCTTTAAGTTTAAGCTCCCATGACACTGACAAAGCTTGTCTCTTCCTTCTCAAACAACATTATCCTACGTTATCTTGTTGGAAACACAACCTCAAAAAACTTTGGGAAAAACTTGAGATGCTCCATTCCTCTGTGATGAAGAAATCTACAGAATTGGTTGATATATGTAGCCAGTCACAGAGCTTTGAAGCAAATTGTGGCTGCAGGATCCATGCATATAGAAGAAGAGGATCTGCACATCCATATGGAAAATAGACATCCAGCTGAGTATAATACTTTTCCACGTCATTTAGAACCAAATCTAATTCAGTTACTTTTTAAGAGCTCCACGTAATATTGAAAGCTGAAGCAGATATAACTGAAAAGAACCCAAATTCGAAGATATCTTTTAGCAGACAATGACAATGTTTGTCTACGTTTGAATTTAATCAAACAAGACCTAATTTTTGTAGAGGAGGAATGGAGGTGATAGATACCAAAATGGAGGATGAGGTAGAAACAGTTCCAACAGTGGGCAATACCAAAATTTTAAGAATCATGTTTCACTAGAATTGGCAATTAAAACACTTTTTTTTCTCTTTCTCTATTTAATGTGTTGCTTCCAGTCTTTTGCCTATCCGTCAATGTTGCATTGGTAGTAATTGTTATCTTAATTCTTACTTTAGTTACTTTTGTATACAACACAAGCTTTTGCAAAAGATCATATTTCAAGGACAAAGTTTTAATGGCCCTTATTTTATTCACCTCACCAAATAGCTTCATTATGGTCAGCTGAAGAATAGCATAAATCTTTAGTTTCTCAACTTGGACAACTTGGAGCCAAAGTATCTTGTATTCTGTGGCATGGTAGGTTGCTGTTTCCTGGTGGTCATATACTTCACAATCTTATTTGAACTTTGATTGGAATGGTGATGTTTATTGGTCTACAAGTTGTTTTTATGGTTCCAGCTCCATTTCCTTGTATGGAAGAAAGCAGCAGACAATGGAGTCCATGAGCTTTACAGAAGCTGAGTACAATGTTTTAGCTTTGATGAGGGCTGAGATGTCTTGGATTTGGCAACTTCTCAACAACTTGTTGGCAAATCTCAGATCCTATCTACTTATTTGGAATGATAATATTTCATCTTTTCATCTTGCTCAATAACAGAACGTGTGAAAGTTAACTTTCGTGGTATTCATGTTTTCAAATAAGAAATTGAGATATAGTAACAAAAAGAAAGTGTCTCCTGTGGGCTGGAGGTAGTGGGAACGGCCATCCAAAGAAGCAACAAAAGAATGGTCTTCCAATATTAAGTAATTATAGATATAATTTCAAAAGAATTTTCTATGTTGAGCACCACCATGAAGCTATATGCTGCACACTATTATGAAAAGAATCAAAGGAAGAATACGTTTCTTCAAGATCCTTTGGTTTCATTCTTTTCAAAGAAGCCAAAAAAGGGCTCTAGTTGTCAACTCTACAAAAACCTTGCCTTACCCTTAAAGCCTCAACCCGATAGGGCTTCAACGAGGTCATCCAATTTTCTGGGAAATCACATTGACAAACCAAATTCTTTCAAAATAAAAATCCAACCACCCTGCACAAAAGGACAATGAAGGAAAATATGATCCAGAGTATCATTCACCCTATAACAAAAGCAGTTGGTCGAATGGGGCGAAGCCCATTTGGGGATTTTCTTTGGGGCTTCTCTTGAGTATCCATGAATTAGGAGAGTAAATCCCCAAATCCATCCATCTCTCGTTCTCATTTTTAGAATATTTGAACTTCCAAATGAGATCTACCAAGGCAGCCTTTAAGAGGGTAGACTACTTCTAAGATTTGTAAAGACGGATTTAGTGGTCAAATTGCCCAATGGCTCTGGGGAGGGACCATACAACCTTGTCTTTCCCGAAGTTCAACTTTACTGCATTTAACTTTTCAAATTATTGGATGAAAAGAACATTCTTATGAAGTTCATTTCAACCGTCTTATTTGAGGTCCATTAACTCATGTCTTTTTAGGCTAATCATTTGATAGAGGATGTTAGTAAAATAAGTATTAGTTAGTTGCTCAGTGGTATCCATTATTTGGTTAACTAACTTTGTTGAACTGGTTATTGGAATTTGACGTGCATTGGCACTCTGCTTTCACTATGTATTTAATGAGAATGACAATGGCACTTGACCAAACTATGACAATTTCAAACGTAACAGCATGATGATATCTATCAAAAAGTATAAATATGTTAAACAGTAAACTGTAGGCTGAAATTAATTATGAATCAGAACTGTTGTTTAATGCACATTCATTGAATTTCTTGAGATTGATCTTTATTTTTCTCAGGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTAACAAATCCTTTTCACTTGTTTCTTGATCGTCCATTCATATTCTATCCTTTCCATTTATTTCTTGATCTTCATATTCTATTAGCAAAATGATTTTAGGGTATCTGGGTAGCTAATTACTCAATGTAATTTTTCTTATGAGCATCAACAACAAGTATTAGCTTTTACTCTTTCAAATGATTTGGGGGTCTAATAGTTTGAGATGCCATTAGATGAACTTTTTCTTTTTTAGAAGCGAGACACCTCTTCTATAGCAATTTTTGGAAGAACTAAGAAGCACCAATTAAGTGCTTTCTCTGAAAATATTTTTACACGTCATGTTGTACTACTATCCATACTTGCCAAATGATTGGATGCTCATTTATTGAAACTTTGCCAGTCCGTTGGATAATTCTGTTCCCTATGCTACAAGGGACATTTTTGAGATGCATTCTTTCATCTTTTCCTGAATACCAGCAAATATTAGGCTGCATACTTTCTTTCTGTAGATAAGATAACATTTTATTGTCGCTGAATTTCTAAACTGGCCTGTGGCCATATGCAGAGCAGTTAAATAAAATATGACAGATATTTCGTTTTCTTGACTATCACTACCTTTTCTATGGGGATTTATTCAAATGATAATAAACTTGTCAGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACGTGAGTTAGATTTTATTTTTAGCTGTATTATGAAGCAGTTTTCTATTTCTTTTCTTTTCATTATGCCTACTCAATTACACTTATTTTTGCAGTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGGTACTTTATCTATTTTTCTATGTGATTAGAAACTTCATTTACTTGGTGATAGTTCAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTGTAAGCTGCTGGGTGCCCTGTAAATCCTTTGACTCCTTTGGGAGGGGCTTAGAACAAGGAAGTCAGAGGGCTGAACTGGAACAAAGTTATTGTAGTGACCAAGAGGACTTCCATGATGACAATGGAAAATCCTCGAGACGCTCCAGGGCTGGACCCGAGACTCCTACACTATCAACCCTTTTCATCCAAATAAATCACTCCTATAATACTCTTCCATGGACACAGTAAGGTTTCTTGCAAGTTGCAATAAATAAGGGAGGTATTACTTTTGGATCCTTCACTTTGAAGTCGGAACACCTGAACCCTCATAAACTTGGGAGAATTAACTCGGTCCCTACCTACAGAGGATGGGTCAGATTCAGAAATATCCCCTAAACTAATGGATCTTGGCTATTTTTTAAGGTGATTAGTAACGGCTTCTAGGGCCTTTTAGACTATGGAGTTAACTCCTTGCCTCATTGAATGCTTGGAAGTTGCCATCAAAGTTATGAGAAAGTATTTTGGCTTCATTTCCTCATAGGTTAAGTTGATAGATAAGGTCCAGGTCTTTATGGCTCAAGTGAAGCTTCTTCTGGGACCGCAATTTATGATTAAAAAAGAAGTGGTACACATTGTTAGAAAGAAACGTATCGCGCCTTATGCAGTTTTTGGAAGAAAAAAAAAATCTGAAAAGTTGAGTTCCATTGAAATAATTTAGTAAAATAGGGGGTAGTTTTTTGTCTCTTTGCAAATGCATATTTCAAAGTGATGCATTTGAGTAGGAATACGTGTTGGATAAGTGTTCAAAATCATGTGTGAATGTCCAAAATCTTGGATGAGTGTTCAAGAGATGCATTTGATTAGGAATGTGTGTGTTTGGCTATAAATATGTTAAATCTCTCAAAAAGAAGAGAAGGGGGAGGTGGGGGCTCATGGCTGAGGGGGATGGAAAAAGAAGAGAGAAAGGTGGGAGATGGGGGCTGGAGGGTAAAGAGGGAAAAGTGCACAAAACCCTAAAAAAGTTCAAAATATATACGGTTGGTTCGGTTCGGAGCAGGTTCCAAAAATTGGCTAGTTATTAAAATCTCTAAAACTGAACCAAATCGAAAATTTATCTTACCCAACCCTGAGTTACTTGAGTTTTTTGGGTTGCCAATATTTTCTTAACCCTCTCTAATTTCAAGCTGGCCAAAGAGCTTTGTCATGACAATGACCTAACAAGTCCAACTTGTAAAACTAAATCATATGAGTGAACTAGTAGCTCCAAAGGATATGATCTCAATTCTTAGATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGGTCTTAACTTTCCCATGCAAGACTAGCTCAACAAAGAGTGAGTTTGACCATGGACACCCCAACCATCCAAAGAGAGAAGCTGAAGTGTTTGTCGTCTCCCTATGTGACAAAGGGTTATGGACTGATTTGAGGATTAACTTGAGTATTTCAAGTAGTTTGAAATTAGAACAGGGAAGGGCACTCAACTTTCTTCCTCCCCAACTCTTGTAATCCTCATTTTCATACAGATAACTATTATGTGGTTCTTCTCAGAAACAGACACCAAACCTTGAGTTCTCTGCTGGAAATGTGACAAACAGGCAACCTTTTGTTTTCATTGGAGGGGGGTCGCCATGTTGCTATAAAAAATACTTCAATGTAATTACAGGGGTGGATCAAAGTGATTACATCGAAGAATTGATATGAAACGAAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGTAAATCAATAGATTGCTTATGTAGTTTATCCCTTGGACCTTTTTTAAGAAAGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTATGTGCTCTACGTCTGGGGGATTTGCGAATCCCTCCTGGCTAAATACTCGAGCCATCTTGTGCTTGATCTTTTAAAAATTTCAGGCATATACCATAACCATATGACTAAAGTTTAGAGAATATTTCCTCTCTAATTCAAGTATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

mRNA sequence

TGTACACTCTAGAGATAAGATTGCAGCAGGAGCGATATAAAGAAGAAGGAACTGCAAAGTGAGAGGAGCGTCAGTGTGTGAAAAATTGAAATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAATATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

Coding sequence (CDS)

ATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGCTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAATATTGGATTATGTGCAGGGATATCGACAAGCGGGTGGTTTTTCTTCCCGAGATCAGGGAAACAGGAGAATATATTGCAGAGCTGAAGCTTCACCCTGAAGTTACTGCTCGAGTGAGAGTGAATGTTTTTGCCAACTGA

Protein sequence

MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQGMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHNVVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVWTDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN

Homology

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BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot
Match: P82180 (50S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-51
Identity = 114/178 (64.04%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 1   MASITT--ALSWSSSVVDVGLPNVGGSFEETAKFSYG-RTGMVVVAQKKATKSRKIILKE 60
           MAS T+  +LSWS+S       +  G+  E  K     R  + +VAQKK  K RKIILKE
Sbjct: 1   MASTTSTLSLSWSNS-----FHSFAGAISEPQKSPENCRVMLPIVAQKKVKKIRKIILKE 60

Query: 61  DVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQ 120
           D+PDLGKKGQL+DV+AG+ RN+L PLGKA++VTP+LLKEM++E+ERIEAEKKRV EEAQQ
Sbjct: 61  DIPDLGKKGQLLDVRAGFLRNFLLPLGKAEVVTPLLLKEMKMEDERIEAEKKRVKEEAQQ 120

Query: 121 LALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           LA +FETVGAFKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR   +  V   D+   G
Sbjct: 121 LARMFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKKVVFLPDIRETG 173

HSP 2 Score: 75.1 bits (183), Expect = 1.9e-12
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN 369
           RD+DK+VVFLP+IRETGEYIAELKLHP+VTA+VRV VFAN
Sbjct: 157 RDVDKKVVFLPDIRETGEYIAELKLHPDVTAQVRVTVFAN 196

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BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot
Match: Q6JJ61 (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-50
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 7   ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKG 66
           ALSWSSS +         +   TAK     +   +V QKK  K RKIILKEDV +LGKKG
Sbjct: 8   ALSWSSSSLLGNYKLSKNAPLGTAKLVERTSNFTIVCQKKTKKIRKIILKEDVQELGKKG 67

Query: 67  QLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVG 126
           QL++V+AGYYRNYL P+G AQIVTP LLKEM+IEEERIEAEKKRV EEAQQLALIFETVG
Sbjct: 68  QLMNVRAGYYRNYLLPMGMAQIVTPQLLKEMKIEEERIEAEKKRVKEEAQQLALIFETVG 127

Query: 127 AFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
            FKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR
Sbjct: 128 GFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQR 160

HSP 2 Score: 65.1 bits (157), Expect = 1.9e-09
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN 369
           R++DKR+V LPEIRETG Y AELKLHPEVTARV+V V AN
Sbjct: 160 REVDKRIVSLPEIRETGAYTAELKLHPEVTARVQVIVSAN 199

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BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot
Match: P25864 (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-49
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

HSP 2 Score: 74.7 bits (182), Expect = 2.4e-12
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN 369
           +DIDKR+V LPEIRETGEYIAELKLHP+VTARV++NVFAN
Sbjct: 158 KDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197

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BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot
Match: P11894 (50S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 8.0e-48
Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 30  AKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIV 89
           ++F    +G +V AQKK  K+RKIILKED+ ++GKKG+L+DV+ G++RN+LFP GKAQ+V
Sbjct: 26  SQFPNKSSGFMVFAQKKTKKTRKIILKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLV 85

Query: 90  TPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDL 149
           TP +LKEM+IEEERIEAEK+RV+EEAQQLAL FET GAFKVKRKGGKGKQIFG+VTAQDL
Sbjct: 86  TPGVLKEMKIEEERIEAEKRRVLEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDL 145

Query: 150 VDIIKAQLQR 160
           VDIIKAQLQR
Sbjct: 146 VDIIKAQLQR 155

HSP 2 Score: 72.4 bits (176), Expect = 1.2e-11
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN 369
           R++DKR+V LPEIRETGEYIAELKLHP+VTA+VRVNV AN
Sbjct: 155 REVDKRIVNLPEIRETGEYIAELKLHPDVTAKVRVNVIAN 194

[Close]

BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot
Match: Q8L803 (50S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.0e-40
Identity = 87/138 (63.04%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 30  AKFSYGR-------TGMVVVAQKKATKSRKIILKEDVPDL-GKKGQLIDVKAGYYRNYLF 89
           A FSY R         +V+VAQ +  K R++ILK+D+ ++ GKKG  + V+AG+YRN+L 
Sbjct: 15  AAFSYPRRLQTRRAPSLVIVAQGRVKKYRQVILKDDIDEISGKKGDTMKVRAGFYRNFLL 74

Query: 90  PLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIF 149
           P GKA ++TP +LKEM++E+ERIEAEKKRV EEAQQLA +FET+GAFKV RKGGKGKQIF
Sbjct: 75  PKGKATLLTPDVLKEMQLEQERIEAEKKRVKEEAQQLARVFETIGAFKVPRKGGKGKQIF 134

Query: 150 GTVTAQDLVDIIKAQLQR 160
           G+VTAQDLVDIIK+QL R
Sbjct: 135 GSVTAQDLVDIIKSQLNR 152

HSP 2 Score: 62.8 bits (151), Expect = 9.5e-09
Identity = 26/38 (68.42%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVF 367
           RD+DKR+V +PEIRE GEY+AE+KLHP+VTA+VR+ V+
Sbjct: 152 RDVDKRLVEVPEIREVGEYVAEIKLHPDVTAKVRLTVY 189

[Close]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL
Match: A0A5A7U986 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00040 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 3.6e-75
Identity = 186/368 (50.54%), Postives = 193/368 (52.45%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVVLPEIRETGEYVAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL
Match: A0A1S3CKN3 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 3.6e-75
Identity = 186/368 (50.54%), Postives = 193/368 (52.45%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVVLPEIRETGEYVAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL
Match: A0A6J1DG22 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020499 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 6.1e-75
Identity = 184/368 (50.00%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSWSSSVVD+GLPN+GG+FEETAKFSYGR+ MVVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RD+DKR+VFLPEIRETGEYIAELKLHPEV+AR
Sbjct: 301 ----------------------------RDVDKRIVFLPEIRETGEYIAELKLHPEVSAR 198

Query: 361 VRVNVFAN 369
           VRVNV+AN
Sbjct: 361 VRVNVYAN 198

[Close]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL
Match: A0A0A0LXN8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G095030 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 8.8e-74
Identity = 184/368 (50.00%), Postives = 193/368 (52.45%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVDLPEIRETGEYVAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL
Match: A0A6J1I3V2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469420 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 9.1e-71
Identity = 180/368 (48.91%), Postives = 189/368 (51.36%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TT+LSW SS   VGLPN G +FEETA FSYGRT +VVVAQKKATKSRKIILKEDVP
Sbjct: 1   MASLTTSLSWRSS---VGLPNFGANFEETANFSYGRTALVVVAQKKATKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 195

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 195

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVVLPEIRETGEYVAELKLHPEVTAR 195

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 195

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: XP_038895317.1 (50S ribosomal protein L9, chloroplastic [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-77
Identity = 192/368 (52.17%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSSVVD+GLPNVGGS EETAKFSYGRT MVVVAQKKA KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSVVDMGLPNVGGSLEETAKFSYGRTAMVVVAQKKALKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGY+RNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYFRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKRVVFLPEIRETGEYIAELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: XP_008463369.1 (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 50S ribosomal protein L9 [Cucumis melo var. makuwa] >TYJ99884.1 50S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 7.4e-75
Identity = 186/368 (50.54%), Postives = 193/368 (52.45%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVVLPEIRETGEYVAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: XP_022152873.1 (50S ribosomal protein L9, chloroplastic [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-74
Identity = 184/368 (50.00%), Postives = 195/368 (52.99%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSWSSSVVD+GLPN+GG+FEETAKFSYGR+ MVVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RD+DKR+VFLPEIRETGEYIAELKLHPEV+AR
Sbjct: 301 ----------------------------RDVDKRIVFLPEIRETGEYIAELKLHPEVSAR 198

Query: 361 VRVNVFAN 369
           VRVNV+AN
Sbjct: 361 VRVNVYAN 198

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: XP_004147275.1 (50S ribosomal protein L9, chloroplastic [Cucumis sativus] >KGN64766.1 hypothetical protein Csa_013040 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.8e-73
Identity = 184/368 (50.00%), Postives = 193/368 (52.45%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 198

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 198

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVDLPEIRETGEYVAELKLHPEVTAR 198

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 198

[Close]

BLAST of Lsi02G014540 vs. NCBI nr
Match: XP_022964816.1 (50S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S ribosomal protein L9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019261.1 50S ribosomal protein L9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 1.9e-70
Identity = 180/368 (48.91%), Postives = 190/368 (51.63%), Query Frame = 0


Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SS   VGLPN G +F+ETAKFS+GRT +VVVAQKKATKSRKIILKEDVP
Sbjct: 1   MASLTTALSWRSS---VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQ 180
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ                      
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQ---------------------- 180

Query: 181 GMLLDFMNEETTLSSISKTHKDGKFLPLLTLKAVGSPAGVVCTPTHDTPLQPQEQGMPHN 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 195

Query: 241 VVLALRVKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 195

Query: 301 TDGHTNLDRYKGRCYGIEPVPGEYWIMCRDIDKRVVFLPEIRETGEYIAELKLHPEVTAR 360
                                       RDIDKR+V LPEIRETGEY+AELKLHPEVTAR
Sbjct: 301 ----------------------------RDIDKRIVVLPEIRETGEYVAELKLHPEVTAR 195

Query: 361 VRVNVFAN 369
           VRVNVFAN
Sbjct: 361 VRVNVFAN 195

[Close]

BLAST of Lsi02G014540 vs. TAIR 10
Match: AT3G44890.1 (ribosomal protein L9 )

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-50
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

HSP 2 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 329 RDIDKRVVFLPEIRETGEYIAELKLHPEVTARVRVNVFAN 369
           +DIDKR+V LPEIRETGEYIAELKLHP+VTARV++NVFAN
Sbjct: 158 KDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197

[Close]

BLAST of Lsi02G014540 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-31
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 247 VKDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAAGSSTGTWTTVWTDGHTN 306
           VK+YKL YYT  YETKDTDIL AF+VTPQ GVPPEEA A VAA SSTGTWTTVWTDG T+
Sbjct: 17  VKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTS 76

Query: 307 LDRYKGRCYGIEPVPGE 324
           LDRYKGRCY IEPVPGE
Sbjct: 77  LDRYKGRCYHIEPVPGE 93

The following BLAST results are available for this feature:

BLAST of Lsi02G014540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82180	5.9e-51	64.04	50S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=...	[more]
Q6JJ61	1.7e-50	72.55	50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3...	[more]
P25864	3.2e-49	66.88	50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 ...	[more]
P11894	8.0e-48	73.85	50S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV...	[more]
Q8L803	8.0e-40	63.04	50S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=...	[more]

BLAST of Lsi02G014540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U986	3.6e-75	50.54	50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CKN3	3.6e-75	50.54	50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 ...	[more]
A0A6J1DG22	6.1e-75	50.00	50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0LXN8	8.8e-74	50.00	50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G0950...	[more]
A0A6J1I3V2	9.1e-71	48.91	50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469...	[more]

BLAST of Lsi02G014540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895317.1	4.6e-77	52.17	50S ribosomal protein L9, chloroplastic [Benincasa hispida]	[more]
XP_008463369.1	7.4e-75	50.54	PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 ...	[more]
XP_022152873.1	1.3e-74	50.00	50S ribosomal protein L9, chloroplastic [Momordica charantia]	[more]
XP_004147275.1	1.8e-73	50.00	50S ribosomal protein L9, chloroplastic [Cucumis sativus] >KGN64766.1 hypothetic...	[more]
XP_022964816.1	1.9e-70	48.91	50S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S r...	[more]

BLAST of Lsi02G014540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44890.1	2.3e-50	66.88	ribosomal protein L9	[more]
ATCG00490.1	1.4e-31	83.12	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	PANTHER	PTHR21368:SF23	50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC	coord: 328..368
None	No IPR available	PANTHER	PTHR21368:SF23	50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC	coord: 1..161
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 254..327 e-value: 8.5E-19 score: 67.9
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	GENE3D	3.10.430.100		coord: 332..367 e-value: 5.5E-6 score: 28.3
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	SUPERFAMILY	55653	Ribosomal protein L9 C-domain	coord: 329..367
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	SUPERFAMILY	55653	Ribosomal protein L9 C-domain	coord: 110..168
IPR020069	Ribosomal protein L9, C-terminal	PFAM	PF03948	Ribosomal_L9_C	coord: 330..366 e-value: 6.3E-7 score: 29.8 coord: 113..158 e-value: 3.7E-5 score: 24.1
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 244..331 e-value: 8.4E-19 score: 69.8
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 244..324
IPR036935	Ribosomal protein L9, N-terminal domain superfamily	GENE3D	3.40.5.10		coord: 52..112 e-value: 5.9E-18 score: 66.1
IPR020594	Ribosomal protein L9, bacteria/chloroplast	TIGRFAM	TIGR00158	TIGR00158	coord: 52..157 e-value: 2.1E-19 score: 68.4
IPR020594	Ribosomal protein L9, bacteria/chloroplast	HAMAP	MF_00503	Ribosomal_L9	coord: 51..368 score: 17.532276
IPR020070	Ribosomal protein L9, N-terminal	PFAM	PF01281	Ribosomal_L9_N	coord: 52..97 e-value: 1.0E-17 score: 63.4
IPR020070	Ribosomal protein L9, N-terminal	PROSITE	PS00651	RIBOSOMAL_L9	coord: 63..90
IPR000244	Ribosomal protein L9	PANTHER	PTHR21368	50S RIBOSOMAL PROTEIN L9	coord: 328..368
IPR000244	Ribosomal protein L9	PANTHER	PTHR21368	50S RIBOSOMAL PROTEIN L9	coord: 1..161
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 52..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G014540.1	Lsi02G014540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome