Lsi02G014420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G014420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLOB domain-containing protein
Locationchr02: 20109670 .. 20110752 (+)
RNA-Seq ExpressionLsi02G014420
SyntenyLsi02G014420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTCTCTCTCTACTGAGTCTAAAATGGAGTGCAGCGAGGCAAAATCCAGCCAAACTTCAACTATCCTCCTTTCTCAGTCGCCTTCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGTCGGCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCCGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGTATCTCCTTAATCCCTAATTTCCATTTCTCTTTCAGTTTTGCGTGTTCTCTTCTTGTTTTTAGGTTTTGAAATTTTGAATTCTATTGTGGAAATTGAAAATTGATCTTAAAACCGTAACGGAAAACCATAGAATTAGTGTGAAAATACTGTTTACATGAATAGTTTGAGCAATTGAGTTCATCTCTGTCTGAAATAAAATTTACTATTGAAATTGATCAAACGAAATCCTAATATTCTCCATATTTTTCCTGGAAATCTGAAGAAAACACAATCCTAATCTGTTTGATTGCTACGCTCAATGAAAATTTGGAGCAATTATAATCAAACATAATGAAAATTGAAGGAATCAAACGAAAGCAGCCCAACTGTTTGATTTTTGTCCTCACAGAACAGCCAATCATATTAATCACTTTTTCCTGATATTAATCACTTTATTGAATTCTACAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGGTGTGCAGGGGCCATTTGCCAGCTCCAGAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCACTGATTTGCAAGGAATTAGCCCAAACACCGCCACCAGTGTCTCCGCTGCCGGACCACCGCACATTTGACAACAATTTCAACATTGCCACTCCTCAGAACCACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACCTGA

mRNA sequence

CATTTCTCTCTCTACTGAGTCTAAAATGGAGTGCAGCGAGGCAAAATCCAGCCAAACTTCAACTATCCTCCTTTCTCAGTCGCCTTCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGTCGGCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCCGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGAATCAAACGAAAGCAGCCCAACTGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGGTGTGCAGGGGCCATTTGCCAGCTCCAGAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCACTGATTTGCAAGGAATTAGCCCAAACACCGCCACCAGTGTCTCCGCTGCCGGACCACCGCACATTTGACAACAATTTCAACATTGCCACTCCTCAGAACCACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACCTGA

Coding sequence (CDS)

ATGGAGTGCAGCGAGGCAAAATCCAGCCAAACTTCAACTATCCTCCTTTCTCAGTCGCCTTCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGTCGGCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCCGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGAATCAAACGAAAGCAGCCCAACTGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGGTGTGCAGGGGCCATTTGCCAGCTCCAGAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCACTGATTTGCAAGGAATTAGCCCAAACACCGCCACCAGTGTCTCCGCTGCCGGACCACCGCACATTTGACAACAATTTCAACATTGCCACTCCTCAGAACCACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACCTGA

Protein sequence

MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNNFNIATPQNHQGYTSLFEDSNIWDPLWT
Homology
BLAST of Lsi02G014420 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-53
Identity = 122/223 (54.71%), Postives = 152/223 (68.16%), Query Frame = 0

Query: 6   AKSSQTSTILLSQSPSSSPSPPPS----VQVGVVVSPCAACKILRRRCAEKCVLAPYFPP 65
           AK ++T+T + S SP+SSP PPPS     Q  VV+SPCAACKILRRRCA+KCVLAPYFPP
Sbjct: 19  AKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPP 78

Query: 66  SDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGC 125
           +DP KFTIAHRVFGASNIIK LQE        LP+SQR DAV+S+VYEA AR+RDPVYGC
Sbjct: 79  TDPAKFTIAHRVFGASNIIKFLQE--------LPESQRTDAVNSMVYEAGARMRDPVYGC 138

Query: 126 AGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHR-TF 185
           AGAI  LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   + QT   V      + +F
Sbjct: 139 AGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI-YNMEQTKLSVQEQGQQKMSF 198

Query: 186 DNNFN-----IATPQNHQGYTSLFEDSN--------IWDPLWT 211
           +++F      I++P          ED+N         WDPLWT
Sbjct: 199 ESSFESGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

BLAST of Lsi02G014420 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 9.8e-51
Identity = 112/208 (53.85%), Postives = 139/208 (66.83%), Query Frame = 0

Query: 7   KSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLK 66
           +S   +++  +   SSS SPPPS+   VV+SPCAACKILRRRCAE+CVLAPYFPP+DP K
Sbjct: 2   ESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAK 61

Query: 67  FTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 126
           FTIAHRVFGASNIIK LQE        LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI 
Sbjct: 62  FTIAHRVFGASNIIKFLQE--------LPESQRTDAVNSMVYEAEARIRDPVYGCAGAIY 121

Query: 127 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNNFNI 186
            LQ+Q++ELQA+LAK Q E+VN+   ++NL+ LI               D +      N+
Sbjct: 122 HLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYN------------MDQQQKQEQDNM 181

Query: 187 ATPQNHQGYTSLFEDSNI----WDPLWT 211
           +   N  G+     ++N     WDPLWT
Sbjct: 182 SFESNDLGFLEDKSNTNSSMLWWDPLWT 189

BLAST of Lsi02G014420 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.8e-35
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 0

Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPD 96
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQE        LP 
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE--------LPI 71

Query: 97  SQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANL 156
            QR DAVSS+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+  
Sbjct: 72  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS-- 131

Query: 157 VALICKELAQTPPPVSPLPDHRTFDNNFNIATPQNHQG---YTSLFEDSNIWDPLWT 211
                  L    P  S  P  +         +PQ+++G   +  + +++++ + +W+
Sbjct: 132 TNFPGHGLCPDSPSSSGSPSSKQ-------VSPQDNKGMFSHMDIVDEASLGESMWS 171

BLAST of Lsi02G014420 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-34
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPD 96
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQE        LP 
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQE--------LPV 66

Query: 97  SQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNI 150
            QRADAV+SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  HQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

BLAST of Lsi02G014420 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-31
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 0

Query: 36  VSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLP 95
           ++PCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L E        +P
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLME--------VP 102

Query: 96  DSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQA 155
           +SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++     +A
Sbjct: 103 ESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

BLAST of Lsi02G014420 vs. ExPASy TrEMBL
Match: A0A1S3CK12 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.7e-94
Identity = 184/213 (86.38%), Postives = 190/213 (89.20%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFP 60
           ME  E KSS TST LLSQSPS SPSPPP+VQ  VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MESREVKSSPTST-LLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYG 120
           PSDPLKFTIAHR+FGASNIIKLL         DLPDSQRADAVSSLVYEASARIRDPVYG
Sbjct: 61  PSDPLKFTIAHRIFGASNIIKLL--------LDLPDSQRADAVSSLVYEASARIRDPVYG 120

Query: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSP---LPDH 180
           CAGAICQLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPP+S    LPDH
Sbjct: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDH 180

Query: 181 RTFDNNFNIATPQNHQGYTSLFEDSNIWDPLWT 211
           R+ DNNFNIATPQ++QGYTSLFEDSNIWDPLWT
Sbjct: 181 RSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 204

BLAST of Lsi02G014420 vs. ExPASy TrEMBL
Match: A0A6J1DVT7 (LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111024535 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.4e-94
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFP 60
           MECSEAKS+ TSTIL SQSPS SP PPPS+  GVVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYG 120
           PSDP KFTIAHRVFGASNIIKLLQ        DLP+SQRADAVSSLVYEASARIRDPVYG
Sbjct: 61  PSDPFKFTIAHRVFGASNIIKLLQ--------DLPESQRADAVSSLVYEASARIRDPVYG 120

Query: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTF 180
           CAGAICQLQKQINELQAELAKTQAELVN+HCHQA+LVALICKELAQTPPPV P PDHR+ 
Sbjct: 121 CAGAICQLQKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP-PDHRSL 180

Query: 181 DNNFNIATPQNHQGYTSLFEDSNIWDPLWT 211
           DNNFNIATPQ++Q YT   EDSNIW+PLWT
Sbjct: 181 DNNFNIATPQSYQNYTPFLEDSNIWEPLWT 201

BLAST of Lsi02G014420 vs. ExPASy TrEMBL
Match: A0A5D3CPB0 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00420 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.1e-84
Identity = 161/185 (87.03%), Postives = 167/185 (90.27%), Query Frame = 0

Query: 29  SVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNE 88
           S +  VVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHR+FGASNIIKLL     
Sbjct: 3   SREAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLL----- 62

Query: 89  SSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN 148
               DLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN
Sbjct: 63  ---LDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN 122

Query: 149 IHCHQANLVALICKELAQTPPPVSP---LPDHRTFDNNFNIATPQNHQGYTSLFEDSNIW 208
           IHCHQ NLVALICKELAQTPPP+S    LPDHR+ DNNFNIATPQ++QGYTSLFEDSNIW
Sbjct: 123 IHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIW 179

Query: 209 DPLWT 211
           DPLWT
Sbjct: 183 DPLWT 179

BLAST of Lsi02G014420 vs. ExPASy TrEMBL
Match: A0A6J1HPR9 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464931 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 7.0e-84
Identity = 169/207 (81.64%), Postives = 178/207 (85.99%), Query Frame = 0

Query: 5   EAKSSQTSTILLSQSPSSSPSPPP-SVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSD 64
           +AKSS TSTI  SQSPSSSP PPP SVQ G+V SPCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSD 61

Query: 65  PLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAG 124
           PLKFTIAHR+FGASNIIKLLQ        DLP+SQR DAVSSLVYEASARIRDPVYGCAG
Sbjct: 62  PLKFTIAHRIFGASNIIKLLQ--------DLPESQRIDAVSSLVYEASARIRDPVYGCAG 121

Query: 125 AICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNN 184
           AI QLQKQINELQAELAKTQAEL+NIH HQ NLVALICKELAQTPPPVSPL DH T DNN
Sbjct: 122 AISQLQKQINELQAELAKTQAELLNIHSHQTNLVALICKELAQTPPPVSPL-DHHTLDNN 181

Query: 185 FNIATPQNHQGYTSLFEDSNIWDPLWT 211
            N ATPQ+   YT+LFEDS+IW+PLWT
Sbjct: 182 LNTATPQS---YTNLFEDSSIWEPLWT 196

BLAST of Lsi02G014420 vs. ExPASy TrEMBL
Match: A0A6J1I3T6 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469412 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 9.1e-84
Identity = 169/207 (81.64%), Postives = 177/207 (85.51%), Query Frame = 0

Query: 5   EAKSSQTSTILLSQSPSSSP-SPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSD 64
           +AKSS TSTI  SQSPSSSP  PPPSVQ G+VVSPCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPSD 61

Query: 65  PLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAG 124
           PLKFTIAHR+FGASNIIKLLQ        DLP+SQR DAVSSLVYEASARIRDPVYGCAG
Sbjct: 62  PLKFTIAHRIFGASNIIKLLQ--------DLPESQRIDAVSSLVYEASARIRDPVYGCAG 121

Query: 125 AICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNN 184
           AI QLQKQINELQAELAKTQAELVNIH HQ NLVALICKELAQTPPPVSP PDH   DNN
Sbjct: 122 AISQLQKQINELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSP-PDHHALDNN 181

Query: 185 FNIATPQNHQGYTSLFEDSNIWDPLWT 211
            N A PQ+   YT+LFEDS+IW+PLWT
Sbjct: 182 LNTAIPQS---YTNLFEDSSIWEPLWT 196

BLAST of Lsi02G014420 vs. NCBI nr
Match: XP_038895012.1 (LOB domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 371.3 bits (952), Expect = 5.4e-99
Identity = 186/210 (88.57%), Postives = 193/210 (91.90%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFP 60
           MEC EAKS Q STI LSQSPSSSPSPPPS+Q GVVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECCEAKSGQASTIFLSQSPSSSPSPPPSIQTGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYG 120
           PSDPLKFTIAHRVFGASNIIKLLQ        DLP+SQRADAVSSLVYEA+ARIRDPVYG
Sbjct: 61  PSDPLKFTIAHRVFGASNIIKLLQ--------DLPESQRADAVSSLVYEANARIRDPVYG 120

Query: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTF 180
           CAGAICQLQKQINELQAELAKTQAELVNIHC QANLVALICKEL Q PPP+SPLPDHR+ 
Sbjct: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCRQANLVALICKELTQLPPPMSPLPDHRSL 180

Query: 181 DNNFNIATPQNHQGYTSLFEDSNIWDPLWT 211
           DNNFNIATPQ++QGYTSLFEDSNIWDPLWT
Sbjct: 181 DNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202

BLAST of Lsi02G014420 vs. NCBI nr
Match: XP_008463550.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93
Identity = 184/213 (86.38%), Postives = 190/213 (89.20%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFP 60
           ME  E KSS TST LLSQSPS SPSPPP+VQ  VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MESREVKSSPTST-LLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYG 120
           PSDPLKFTIAHR+FGASNIIKLL         DLPDSQRADAVSSLVYEASARIRDPVYG
Sbjct: 61  PSDPLKFTIAHRIFGASNIIKLL--------LDLPDSQRADAVSSLVYEASARIRDPVYG 120

Query: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSP---LPDH 180
           CAGAICQLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPP+S    LPDH
Sbjct: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDH 180

Query: 181 RTFDNNFNIATPQNHQGYTSLFEDSNIWDPLWT 211
           R+ DNNFNIATPQ++QGYTSLFEDSNIWDPLWT
Sbjct: 181 RSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 204

BLAST of Lsi02G014420 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFP 60
           MECSEAKS+ TSTIL SQSPS SP PPPS+  GVVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYG 120
           PSDP KFTIAHRVFGASNIIKLLQ        DLP+SQRADAVSSLVYEASARIRDPVYG
Sbjct: 61  PSDPFKFTIAHRVFGASNIIKLLQ--------DLPESQRADAVSSLVYEASARIRDPVYG 120

Query: 121 CAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTF 180
           CAGAICQLQKQINELQAELAKTQAELVN+HCHQA+LVALICKELAQTPPPV P PDHR+ 
Sbjct: 121 CAGAICQLQKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP-PDHRSL 180

Query: 181 DNNFNIATPQNHQGYTSLFEDSNIWDPLWT 211
           DNNFNIATPQ++Q YT   EDSNIW+PLWT
Sbjct: 181 DNNFNIATPQSYQNYTPFLEDSNIWEPLWT 201

BLAST of Lsi02G014420 vs. NCBI nr
Match: XP_004147299.1 (LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical protein Csa_013406 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 176/216 (81.48%), Postives = 189/216 (87.50%), Query Frame = 0

Query: 1   MECSEAKSSQTSTILLSQ--SPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPY 60
           ME ++ KSS TST+LLS   SPS SPSPPP+VQ  VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPV 120
           FPPSDPLKFTIAHR+FGASNIIKLL         DLPDSQRADAVSSLVYEASARIRDPV
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLL--------LDLPDSQRADAVSSLVYEASARIRDPV 120

Query: 121 YGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSP---LP 180
           YGCAGAICQLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPP+S    LP
Sbjct: 121 YGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLP 180

Query: 181 DHRTFDNNFNI-ATPQNHQGYTSLFEDSNIWDPLWT 211
           +HR+ DN+FNI ATPQ++QGYTSLF DSNIWDPLWT
Sbjct: 181 EHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 208

BLAST of Lsi02G014420 vs. NCBI nr
Match: KAA0051926.1 (LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 6.5e-84
Identity = 161/185 (87.03%), Postives = 167/185 (90.27%), Query Frame = 0

Query: 29  SVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNE 88
           S +  VVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHR+FGASNIIKLL     
Sbjct: 3   SREAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLL----- 62

Query: 89  SSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN 148
               DLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN
Sbjct: 63  ---LDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVN 122

Query: 149 IHCHQANLVALICKELAQTPPPVSP---LPDHRTFDNNFNIATPQNHQGYTSLFEDSNIW 208
           IHCHQ NLVALICKELAQTPPP+S    LPDHR+ DNNFNIATPQ++QGYTSLFEDSNIW
Sbjct: 123 IHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIW 179

Query: 209 DPLWT 211
           DPLWT
Sbjct: 183 DPLWT 179

BLAST of Lsi02G014420 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-54
Identity = 122/223 (54.71%), Postives = 152/223 (68.16%), Query Frame = 0

Query: 6   AKSSQTSTILLSQSPSSSPSPPPS----VQVGVVVSPCAACKILRRRCAEKCVLAPYFPP 65
           AK ++T+T + S SP+SSP PPPS     Q  VV+SPCAACKILRRRCA+KCVLAPYFPP
Sbjct: 19  AKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPP 78

Query: 66  SDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGC 125
           +DP KFTIAHRVFGASNIIK LQE        LP+SQR DAV+S+VYEA AR+RDPVYGC
Sbjct: 79  TDPAKFTIAHRVFGASNIIKFLQE--------LPESQRTDAVNSMVYEAGARMRDPVYGC 138

Query: 126 AGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHR-TF 185
           AGAI  LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   + QT   V      + +F
Sbjct: 139 AGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI-YNMEQTKLSVQEQGQQKMSF 198

Query: 186 DNNFN-----IATPQNHQGYTSLFEDSN--------IWDPLWT 211
           +++F      I++P          ED+N         WDPLWT
Sbjct: 199 ESSFESGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

BLAST of Lsi02G014420 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 201.4 bits (511), Expect = 7.0e-52
Identity = 112/208 (53.85%), Postives = 139/208 (66.83%), Query Frame = 0

Query: 7   KSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLK 66
           +S   +++  +   SSS SPPPS+   VV+SPCAACKILRRRCAE+CVLAPYFPP+DP K
Sbjct: 2   ESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAK 61

Query: 67  FTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 126
           FTIAHRVFGASNIIK LQE        LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI 
Sbjct: 62  FTIAHRVFGASNIIKFLQE--------LPESQRTDAVNSMVYEAEARIRDPVYGCAGAIY 121

Query: 127 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNNFNI 186
            LQ+Q++ELQA+LAK Q E+VN+   ++NL+ LI               D +      N+
Sbjct: 122 HLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYN------------MDQQQKQEQDNM 181

Query: 187 ATPQNHQGYTSLFEDSNI----WDPLWT 211
           +   N  G+     ++N     WDPLWT
Sbjct: 182 SFESNDLGFLEDKSNTNSSMLWWDPLWT 189

BLAST of Lsi02G014420 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-36
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 0

Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPD 96
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQE        LP 
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE--------LPI 71

Query: 97  SQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANL 156
            QR DAVSS+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+  
Sbjct: 72  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS-- 131

Query: 157 VALICKELAQTPPPVSPLPDHRTFDNNFNIATPQNHQG---YTSLFEDSNIWDPLWT 211
                  L    P  S  P  +         +PQ+++G   +  + +++++ + +W+
Sbjct: 132 TNFPGHGLCPDSPSSSGSPSSKQ-------VSPQDNKGMFSHMDIVDEASLGESMWS 171

BLAST of Lsi02G014420 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-36
Identity = 71/113 (62.83%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPD 96
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQE        LP 
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQE--------LPV 66

Query: 97  SQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNI 150
            QRADAV+SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  HQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

BLAST of Lsi02G014420 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 0

Query: 36  VSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLP 95
           ++PCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L E        +P
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLME--------VP 102

Query: 96  DSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQA 155
           +SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++     +A
Sbjct: 103 ESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SK082.1e-5354.71LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
Q9LQR09.8e-5153.85LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
Q9SHE99.8e-3545.76LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q8LBW31.3e-3462.83LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q8L5T53.9e-3153.78LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A1S3CK125.7e-9486.38LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=... [more]
A0A6J1DVT77.4e-9485.24LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A5D3CPB03.1e-8487.03LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1HPR97.0e-8481.64LOB domain-containing protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1I3T69.1e-8481.64LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
XP_038895012.15.4e-9988.57LOB domain-containing protein 1-like [Benincasa hispida][more]
XP_008463550.11.2e-9386.38PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
XP_022157927.11.5e-9385.24LOB domain-containing protein 11-like [Momordica charantia][more]
XP_004147299.11.1e-8881.48LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical pro... [more]
KAA0051926.16.5e-8487.03LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB ... [more]
Match NameE-valueIdentityDescription
AT2G28500.11.5e-5454.71LOB domain-containing protein 11 [more]
AT1G07900.17.0e-5253.85LOB domain-containing protein 1 [more]
AT1G31320.17.0e-3645.76LOB domain-containing protein 4 [more]
AT2G30130.19.1e-3662.83Lateral organ boundaries (LOB) domain family protein [more]
AT2G40470.12.7e-3253.78LOB domain-containing protein 15 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 19..209
NoneNo IPR availablePANTHERPTHR31301:SF137LOB DOMAIN-CONTAINING PROTEIN 1coord: 19..209
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 38..143
e-value: 4.4E-38
score: 129.8
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 37..146
score: 24.962748

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G014420.1Lsi02G014420.1mRNA