Lsi02G013950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cold-inducible RNA-binding protein B
Location	chr02: 19167505 .. 19168357 (+)
RNA-Seq Expression	Lsi02G013950
Synteny	Lsi02G013950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTGTCATCATACACAACGATCGAACGCCTTGAGAGCCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACATATCTCCTCCTTAATGCGTTTCAGTTTCTATTTCCTTTCTCATCAATGGAAAATTTCAATTTCTACAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGGCTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAACCTAGTCGACGAAATGTCTGACTGACGTTTTATGTTCTATTTACATTTGTCGCATCTGGAAGATGGTTATGTTTGAATTTGTTTATTATTGAGAATTTATTTCAATTGGGTTTTGTGAAAACAATGCCTTCAATATGCATATCTATTGGGCTTGATTAATATGAGCTTTCAACCAAGATGCTGATTTTGGTAGCTAGTAGTTTCATGGATCAAATGTTTCAATCTGGGTCAATCATCAAGGAGATTATATAAGTTTTGTTTGGATAATTGATGCAGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGTAGATGCTACATCTAGATAAAGAACATCACTCACAACAAGACATGGGGATTTGGATGTTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAACAAGTCAGTTCGTTTTGAAAGAAAATAGTAAGATTACGATTGTAATGAGTCTAATGATCTAATCTCTTCTATGATAAATGTGCGAAAAATTTAACTGTTGCCTTGAAACATCAATTTTTAAATTGGGTCTGCTTAACAATC

mRNA sequence

GACTGTCATCATACACAACGATCGAACGCCTTGAGAGCCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACATATCTCCTCCTTAATGCGTTTCAGTTTCTATTTCCTTTCTCATCAATGGAAAATTTCAATTTCTACAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGTAGATGCTACATCTAGATAAAGAACATCACTCACAACAAGACATGGGGATTTGGATGTTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAACAAGTCAGTTCGTTTTGAAAGAAAATAGTAAGATTACGATTGTAATGAGTCTAATGATCTAATCTCTTCTATGATAAATGTGCGAAAAATTTAACTGTTGCCTTGAAACATCAATTTTTAAATTGGGTCTGCTTAACAATC

Coding sequence (CDS)

GACTGTCATCATACACAACGATCGAACGCCTTGAGAGCCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACATATCTCCTCCTTAATGCGTTTCAGTTTCTATTTCCTTTCTCATCAATGGAAAATTTCAATTTCTACAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGTAGATGCTACATCTAGATAA

Protein sequence

DCHHTQRSNALRACFHPSVQSLKVHISSLMRFSFYFLSHQWKISISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDATSR

Homology

[Close]

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-08
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 45 ISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA 96
          IS   +V+D +T+R +GFGFVTF++P +AK A+ AMNG+ VDGR I V+ A
Sbjct: 31 ISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81

[Close]

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 50  LVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR 99
           +V D    RPKGF F+ +++  EA KA+Q M+G+ +DGR+IFVE AKTR
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-08
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 48  ARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR 100
           A++V D  + R KGFGFVTF S  EA+KAL   NG+ ++GR IFV++AK ++
Sbjct: 63  AQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 45 ISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA 96
          IS   +V+D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

[Close]

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 45 ISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA 96
          IS   +V+D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Sbjct: 32 ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

[Close]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.2e-24
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           SIS ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD
Sbjct: 32  SISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVD 91

Query: 104 ATS 107
            TS
Sbjct: 92  PTS 94

[Close]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           S+S ARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVD
Sbjct: 32  SVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVD 91

Query: 104 ATSR 108
           A SR
Sbjct: 92  AASR 95

[Close]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           S+S ARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVD
Sbjct: 32  SVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVD 91

Query: 104 ATSR 108
           A SR
Sbjct: 92  AASR 95

[Close]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL
Match: A0A6P4AB97 (small RNA-binding protein 11, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107427791 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 31  RFSFYFLSHQWKI------SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRI 90
           R SFY  + Q K       +++ ARLVRDPKTQRPKGFGFVTF S VEA+ AL+A+NGRI
Sbjct: 13  RLSFYTTNEQLKKLFSPFGAVTEARLVRDPKTQRPKGFGFVTFDSEVEARNALKALNGRI 72

Query: 91  VDGRLIFVEFAKTRRHGVDATS 107
           VDGRLIFVE A++ +HG DATS
Sbjct: 73  VDGRLIFVEVARSMQHGEDATS 94

[Close]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGV 103
           ++S ARLVRDPKT RPKGFGFVTFQSPVEA+KA++AMNGRIVDGRLIFVEFA TR  GV
Sbjct: 32  AVSEARLVRDPKTHRPKGFGFVTFQSPVEAEKAIRAMNGRIVDGRLIFVEFANTRGRGV 90

[Close]

BLAST of Lsi02G013950 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 3.5e-25
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           S+S ARL+RDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD
Sbjct: 43  SVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 102

Query: 104 ATSR 108
           A SR
Sbjct: 103 AASR 106

[Close]

BLAST of Lsi02G013950 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           SIS ARL+RDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD
Sbjct: 32  SISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVD 91

Query: 104 ATS 107
            TS
Sbjct: 92  PTS 94

[Close]

BLAST of Lsi02G013950 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           S+S ARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVD
Sbjct: 32  SVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVD 91

Query: 104 ATSR 108
           A SR
Sbjct: 92  AASR 95

[Close]

BLAST of Lsi02G013950 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           S+S ARL+RDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKT  HGVD
Sbjct: 32  SVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTSGHGVD 91

Query: 104 ATSR 108
           A SR
Sbjct: 92  AASR 95

[Close]

BLAST of Lsi02G013950 vs. NCBI nr
Match: XP_004135289.2 (small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypothetical protein Csa_008079 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-22
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 44  SISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVD 103
           SIS ARL+RDPKT+RPKGFGFVTFQSP EAKKAL+AM+GRIVDGRLIFVEFAKT +HGVD
Sbjct: 32  SISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVEFAKTEKHGVD 91

Query: 104 ATS 107
            TS
Sbjct: 92  PTS 94

[Close]

BLAST of Lsi02G013950 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.7e-15
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 45 ISTARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK 97
          I  ARL+RD +TQRPKGFGF+TF S  +A+KAL++++G+IVDGRLIFVE AK
Sbjct: 33 IKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of Lsi02G013950 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 34/49 (69.39%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 48  ARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK 97
           ARL++D +TQRPKGFGF+TF+S  +A+KAL+A+NG+IV+GRLIFVE AK
Sbjct: 95  ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143

[Close]

BLAST of Lsi02G013950 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 50  LVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR 99
           +V D    RPKGF F+ +++  EA KA+Q M+G+ +DGR+IFVE AKTR
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Lsi02G013950 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 48  ARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR 100
           A++V D  + R KGFGFVTF S  EA+KAL   NG+ ++GR IFV++AK ++
Sbjct: 63  AQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Lsi02G013950 vs. TAIR 10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-07
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 50  LVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRH 101
           ++ D    RPKGF +VTF S  EA+KAL  +N ++VDGR++ ++  K  +H
Sbjct: 52  VIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKH 102

The following BLAST results are available for this feature:

BLAST of Lsi02G013950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	2.3e-08	54.90	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q9FX45	3.1e-08	53.06	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	6.8e-08	51.92	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
P60826	1.5e-07	54.90	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	1.5e-07	54.90	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of Lsi02G013950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5W5	9.2e-24	90.48	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A6J1KF23	2.7e-23	89.06	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	2.7e-23	89.06	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6P4AB97	6.8e-19	64.63	small RNA-binding protein 11, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC1...	[more]
A0A6J1DM71	6.8e-19	83.05	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Lsi02G013950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895198.1	3.5e-25	93.75	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_008457543.1	1.9e-23	90.48	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
XP_022949004.1	5.5e-23	89.06	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
KAG6607208.1	2.7e-22	87.50	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_004135289.2	4.7e-22	85.71	small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypo...	[more]

BLAST of Lsi02G013950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	7.7e-15	67.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	1.7e-14	69.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.2e-09	53.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	4.8e-09	51.92	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	2.7e-07	43.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..93 e-value: 2.2E-8 score: 43.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..90 e-value: 3.6E-13 score: 49.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..97 score: 12.713834
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..63 e-value: 1.2E-6 score: 30.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..105 e-value: 2.9E-13 score: 51.8
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 45..99
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 45..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013950.1	Lsi02G013950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding