Lsi02G013940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S15a
Location	chr02: 19155444 .. 19158360 (-)
RNA-Seq Expression	Lsi02G013940
Synteny	Lsi02G013940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGTCCATTTATAATGCTTCAAACCCTAACGCCCATTCTTTGAAGCTAGCCAACGCCTCCTTCTGCAATTCAGGTACATCTTCTCTATTCATCTCTTCGTCTCTTTCAGATTTATCTAAGTGTATGTTCGTGTTTTTTCTCGAGTTCTTGTTGTATATTGTTTCATTTCTTCTGGTTTTGTTTCTCTCTTGCTTTTTCTAGAAACCCCTTGAAGCTCTAATTTGGAAGGATGGTCAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGAGGGAAACGACAGGTCATGATCAGGCCTTCTTCCAAAGTGATCATCAAGTTTCTTCTCGTTATGCAGAAGCACGGTTTGTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCACTATCCTCTTTGATTTGACTTCATATTAGCAATCTTTTCTCCCTAGGTCATCTAATTTCATCTCTTTTTCTTTAATGTTTAGGATATATTGGGGAATTTGAGTTCGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGACGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTAGGCTCCTTCCCTCCAGACAGGTTAGTGTTCAATACCTTTTACATTTGTAAAATGTGATTCTGAAGTTCAGGAATTACTTTGGAGATGTCGATGATTGTGAAATTGTCTTGTCTGTTAGATTATCTTAGATGCTAACTCTGGCTATTTGGTTATCTTAGTAGATGCCCATGAATGAGTTGTATGAGTAATTTTCCATTGGACAAGAAGTTGATAAAGCAGTGCTCTAAAATAGCTGATTAGTTTTGCAAATGTTTAGACCATTGTTTTTTAAAGCGCAAGGCGCAATAAGACTAGTCAATGGTGTCTCTTAAGCGCAAGGTGGCTCACTATGTATAAAAGTACAAATAAGCATAGTTCGCAATAAGACTCAATAGTCAATAGTGTCTCTTAAGTGCAAGGTGCCTGGGGCGCACTATGTATAAAAGTACAAAGAAGCATAGTTGAAGTGAAAATGTGAAAAAAAAGACTCTTGAACACAAGAAATTTTGCAGATCTTATATAGTTGAAGTAGAAATATGAAGAAAAACCCTTGGAACACCAGAAATTTTGCTATTTTGTGAGCCTCCTGACTTGTGCTTGTGCCTAGGAGCGTGCCTGAGAGGGCTTTTTAAAGCACTGGTTTAGACAGAAGTTTGGACTATTTTACTTTTTAATTATCTTATATTTTCTTTTGTGGGTACTTTCTCTGTATTGAGATATGTTGAGTAGCATGGTCTTGAAATGCATTGTAATGGTTTGTTTGATAAATTCATATATGCAGTTTGGATTTATTGTGCTGACAACATCTGCTGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGAAAAGTACTTGGTTTCTTCTACTGAACGTGGTTTTGAGTATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTGTCGGTAAAGAAAGATCCTTATCTTGTAATGATGATTAGATTTTGTGTTGCCAGTTTCTCATCTCTTAAGTTAATTTCAAGAAAATTTTTATTGTTTTGGTGAAGACATTTTGGCTTTTTTAATTAATATTGGAAGAGAACTAGTGCTTTTTAATTCCCTTATGTTTCTTGCTATGATACCCACTACCCCAACTTTGTTCTCTGTCACTTAACTTTTTAAGTTCAATAATAGATATCTTAGGGACCAATTTTAAA

mRNA sequence

TTTCGTCCATTTATAATGCTTCAAACCCTAACGCCCATTCTTTGAAGCTAGCCAACGCCTCCTTCTGCAATTCAGAAACCCCTTGAAGCTCTAATTTGGAAGGATGGTCAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGAGGGAAACGACAGGTCATGATCAGGCCTTCTTCCAAAGTGATCATCAAGTTTCTTCTCGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTTCGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGACGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTAGGCTCCTTCCCTCCAGACAGTTTGGATTTATTGTGCTGACAACATCTGCTGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGAAAAGTACTTGGTTTCTTCTACTGAACGTGGTTTTGAGTATCCATTATGGAGTTTTGACATAGCTTTCAAATAGTACTACATTTTGTCGGTAAAGAAAGATCCTTATCTTGTAATGATGATTAGATTTTGTGTTGCCAGTTTCTCATCTCTTAAGTTAATTTCAAGAAAATTTTTATTGTTTTGGTGAAGACATTTTGGCTTTTTTAATTAATATTGGAAGAGAACTAGTGCTTTTTAATTCCCTTATGTTTCTTGCTATGATACCCACTACCCCAACTTTGTTCTCTGTCACTTAACTTTTTAAGTTCAATAATAGATATCTTAGGGACCAATTTTAAA

Coding sequence (CDS)

ATGGTCAGAGTTAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGAGGGAAACGACAGGTCATGATCAGGCCTTCTTCCAAAGTGATCATCAAGTTTCTTCTCGTTATGCAGAAGCACGGATATATTGGGGAATTTGAGTTCGTCGATGATCATAGATCTGGAAAAATTGTTGTTGAACTCAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGACGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTAGGCTCCTTCCCTCCAGACAGTTTGGATTTATTGTGCTGACAACATCTGCTGGAATTATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGAAAAGTACTTGGTTTCTTCTACTGA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY

Homology

[Close]

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 2.9e-69
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot
Match: Q9LX88 (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-69
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 260.8 bits (665), Expect = 8.4e-69
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 257.7 bits (657), Expect = 7.1e-68
Identity = 124/130 (95.38%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot
Match: O80646 (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 6.2e-64
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL
Match: A0A1S3CPB7 (40S ribosomal protein S15a-1 OS=Cucumis melo OX=3656 GN=LOC103503055 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL
Match: A0A5A7SSH5 (40S ribosomal protein S15a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00840 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL
Match: Q9SBL9 (Wrp15a OS=Citrullus lanatus OX=3654 GN=wrp15a PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL
Match: A0A0A0KZP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G608140 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 85  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 144

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 145 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 204

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 205 VGGKVLGFFY 214

[Close]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL
Match: A0A6A4L076 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_16699 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. NCBI nr
Match: KAF7148267.1 (hypothetical protein RHSIM_Rhsim03G0129000 [Rhododendron simsii])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 22  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 81

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 82  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 141

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 142 VGGKVLGFFY 151

[Close]

BLAST of Lsi02G013940 vs. NCBI nr
Match: KAG5557696.1 (hypothetical protein RHGRI_007820 [Rhododendron griersonianum])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 18  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 77

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 78  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 137

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 138 VGGKVLGFFY 147

[Close]

BLAST of Lsi02G013940 vs. NCBI nr
Match: XP_004144630.1 (40S ribosomal protein S15a-1 [Cucumis sativus] >XP_008457542.1 PREDICTED: 40S ribosomal protein S15a-1 [Cucumis melo] >XP_008465450.1 PREDICTED: 40S ribosomal protein S15a-1 [Cucumis melo] >XP_011657911.1 40S ribosomal protein S15a-1 [Cucumis sativus] >XP_038893650.1 40S ribosomal protein S15a-1 [Benincasa hispida] >XP_038897125.1 40S ribosomal protein S15a-1 [Benincasa hispida] >KAA0033910.1 40S ribosomal protein S15a-1 [Cucumis melo var. makuwa] >BAA89231.1 wrp15a [Citrullus lanatus] >KAA0052378.1 40S ribosomal protein S15a-1 [Cucumis melo var. makuwa] >KAE8649788.1 hypothetical protein Csa_011988 [Cucumis sativus] >KAE8653230.1 hypothetical protein Csa_019672 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. NCBI nr
Match: KAF7133456.1 (hypothetical protein RHSIM_Rhsim09G0164200 [Rhododendron simsii])

HSP 1 Score: 265.0 bits (676), Expect = 3.4e-67
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEFVDDHRSGK
Sbjct: 20  MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 79

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 80  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 139

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 140 VGGKVLGFFY 149

[Close]

BLAST of Lsi02G013940 vs. NCBI nr
Match: KAE9451430.1 (hypothetical protein C3L33_16699, partial [Rhododendron williamsianum] >KAG5533434.1 hypothetical protein RHGRI_027562 [Rhododendron griersonianum])

HSP 1 Score: 265.0 bits (676), Expect = 3.4e-67
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEFVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-70
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-70
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-70
Identity = 126/130 (96.92%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. TAIR 10
Match: AT3G46040.1 (ribosomal protein S15A D )

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-70
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFE+VDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Lsi02G013940 vs. TAIR 10
Match: AT2G39590.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 244.6 bits (623), Expect = 4.4e-65
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFE+VDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

The following BLAST results are available for this feature:

BLAST of Lsi02G013940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42798	2.9e-69	96.92	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q9LX88	3.8e-69	96.92	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=...	[more]
Q00332	8.4e-69	96.15	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]
Q9AT34	7.1e-68	95.38	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
O80646	6.2e-64	90.00	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=...	[more]

BLAST of Lsi02G013940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPB7	9.7e-68	100.00	40S ribosomal protein S15a-1 OS=Cucumis melo OX=3656 GN=LOC103503055 PE=3 SV=1	[more]
A0A5A7SSH5	9.7e-68	100.00	40S ribosomal protein S15a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
Q9SBL9	9.7e-68	100.00	Wrp15a OS=Citrullus lanatus OX=3654 GN=wrp15a PE=2 SV=1	[more]
A0A0A0KZP3	9.7e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G608140 PE=3 SV=1	[more]
A0A6A4L076	1.6e-67	99.23	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of Lsi02G013940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7148267.1	2.0e-67	100.00	hypothetical protein RHSIM_Rhsim03G0129000 [Rhododendron simsii]	[more]
KAG5557696.1	2.0e-67	100.00	hypothetical protein RHGRI_007820 [Rhododendron griersonianum]	[more]
XP_004144630.1	2.0e-67	100.00	40S ribosomal protein S15a-1 [Cucumis sativus] >XP_008457542.1 PREDICTED: 40S ri...	[more]
KAF7133456.1	3.4e-67	99.23	hypothetical protein RHSIM_Rhsim09G0164200 [Rhododendron simsii]	[more]
KAE9451430.1	3.4e-67	99.23	hypothetical protein C3L33_16699, partial [Rhododendron williamsianum] >KAG55334...	[more]

BLAST of Lsi02G013940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07770.1	2.1e-70	96.92	ribosomal protein S15A	[more]
AT1G07770.2	2.1e-70	96.92	ribosomal protein S15A	[more]
AT5G59850.1	2.1e-70	96.92	Ribosomal protein S8 family protein	[more]
AT3G46040.1	2.7e-70	96.92	ribosomal protein S15A D	[more]
AT2G39590.1	4.4e-65	90.00	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 7..130 e-value: 1.1E-21 score: 77.1
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..130
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 100..117
IPR000630	Ribosomal protein S8	HAMAP	MF_01302_A	Ribosomal_S8_A	coord: 2..130 score: 32.288784
None	No IPR available	GENE3D	3.30.1490.10		coord: 70..130 e-value: 1.2E-36 score: 126.1
None	No IPR available	GENE3D	3.30.1370.30		coord: 1..69 e-value: 8.4E-36 score: 123.7
None	No IPR available	PANTHER	PTHR11758:SF39	OS02G0478600 PROTEIN	coord: 1..130
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 4..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013940.1	Lsi02G013940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome