Lsi02G013610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	outer envelope pore protein 16, chloroplastic
Location	chr02: 18268524 .. 18271403 (+)
RNA-Seq Expression	Lsi02G013610
Synteny	Lsi02G013610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAATTGGATGGTGTAAAATCCAACGGCCAATACTGGCCTCGGGCAACCCAACAAAATAGTTGGACAGTTGGACTCATCTTCCTCTTTACAAATCCCAGAAAAATCCAAAATTCATTTGAATTACACTCCAAAAAAACTCAAACAATCTGTACTGTAGCGGCAAAAATAAGGACAACCCATTCTCCGCCATCCTCCACATTCAATCCTTTCCCTCCTTCCCACACGCAACTCTGTCAACAACACGATGCCTCGCACCGGCTTCGTCGGCTCCTTATCGACGCCCAAGGTCGACGTCGTCATCGACATGGGTAACCCCTTCCTCAACCTCACCGTCGATGGCTTCTTGAAGATCGGATCTGTATGTATTTCTTTCTTTTTCTGTTTTTTTCTTGCTCTTTTTCCTTTCTTATGTCTAAATTCCAAATGTGTTCTGTTCTTTTGCTTCTTTCTAGGTCGCTGCTACTCGGGCGGCTGCTGAGGATGCTTATCATGTCGTTAGAAAAGGTTTTTTTTCCCTCGCCTTCTTCTTCTGTTCCTCTCTTTCTCTCTGAGGAATTGATTTCAATTTCTTCCTTGATGCAGGAACAATTTCTACTCACAATTTTGAAAACACGGTTAGTATCTTTTGCTTCAGACTCAATGCTAGTCTATGGCTTTTGGTTGCTGAAATTTTCATTCTGAGAATGTTTATAATTAGGAAAGAGATTTTTAATAAGTAGAATATATATTTAACTTCATTTTTATCGCTGGTGTGGTAGTTTCTGTTTAGAAATCTCAATATCAGTGTATCGCCAAAGGCTTAAAAATAATTACTACCTATATCAACAAGGTGCACCTTCTTTTCGGTGACTCAATTCTATGTCGAGTGACCCTTGAAAATTTTCCTAGGAAGCATGTGAGTGAGGATAAACATACTGAAAATACTTGTGAAAATACTTGTGTTGGTTCGTGGAAATAGTTTTTACTCTCAGGAGCAGTTCAAGACAAGCAAGGATCGCATTGCCAGGTTGTAGGGGAATGTCGAGGCCACAGAATTCTGAATCTTGGTTCTGGGTTGTTACACAATCAATTGCATTTCTAGCATTTGGATCTAATACTATTAAAGTAGGTTTCATGTTTGAACCAAGATATGGAACTCTCATTGCACTTGGAAAGGTTACAAAAATGATCATGCTGTTTTGTAAAAGAATAATGTTGAATCACCACCAGGGCCTTGAAAGCTTGAGTGGATAAGTAGGATTTTGAACTTAAAATTGCCTGCTTTTTGGTCTTTTGATCTATAAGAAAAATATTGAAGCTTGAAATTGTTGTTACTCTCTCACTCTACTCTCTTGTTCAGCTAATTAACTTGAACTTCTGTTGCAGTTGAAGAAAATGTGTAAAGAAGGTGCATATTGGGGTAAGTATGGATCCCATTACTCCTCAATGAAGTACTTAGCTTAGTTGATGAGTTTCAGCATCTATAAATCTCATGCCAGTTTGTTCTTGGATATTAAGCTTATAACTTCAAAAGTAATTTTGAAAGTCGATTTGAAAATATAGAGAAAGGCGAATAACCAGCAAACTATTGTTTCTGTTTGAATGCAGGAACTGTAGCTGGAGTTTATGTTGGTATGGAGTATGGAGTAGAAAGGATTCGCGGCACAAGAGATTGGGTATGTTTGCCATTAATTCAAAGTCATCCTTCAAATCAAGTTTGAGTTATTATGTTAGATTGTTGCTTCCATCTCTCTCTGTTTGTTTGGGAATATTTTCAATATTCTGTTCGATTTTCGTCTCGGTTGGTCCACATTGTAGAATGTATTGGTCCTAGATTGGAAAAGAACTCTTGTCTGTTGCTATTTGATTTCAAACAACCCAGAAACAAAATCTTTCAAGGTATATTATGAATGTTCCTTGCATTTGTCCTCTTATTGAAGTGATTATATCATTACACACAACCATCTAACAGAGGATCAACTCAGGCCTGAGTTGTCTGTAGTATTTCAAACAATGTCATCTCTATTTACTGCGTCAAATTACTTCGAGAATCTGTAGTTTCTAATTGAGCACATCACCAATACATTCATTTGTCAATTTTGGAGAGAAATTTTGAATGTAGATCAAAATGTTTGAGCATTTGTTTCCAGAAAAATGCAATGATTGGAGGTGCTTTGACGGGAGCTTTAGTATCGGCAGCGAGCAACAACAACCGAGACAAAATTGTTATCGATGCAATTACAGGAGGGGCTGTTGCAACCGCTGCAGAGTTCATAAACTATCTTACTTGAGCCGAGGTTTTCCGGGCATTTTCGTGTCCTGTATCTTGTAAACCTCAAGCAGAAGGTATGGTGATTGAAGACAACTCATTCTCACTACTAAATCATGTCCTGTTTATAAGAAATAACATCAAAATGTTAATGTATGTAACAATATATTGAAACTTTTTCATTTTCTTTTTGCAGAATAACCAGCTTGGTATGATTAGTCTCTCGTAGAGTTGCAGCCTAAAATATGAAGAAAAAGAGAAAAGAAAGTAATAGAATTATCTTCTTTCTTCATGAATGAGAGCCACATGTCTTGTTGAGGCTGTAATCGCAGCTATAGTTTCTTTGTTATAAGGAAATAAAGTATTGGTTAAGCTTTTAAGAAAGGGATATTTCTTCTTTTTTGTCTTTTTAAGTTTTTAACATAACAAATTTAAGTTGGTTCACCTTTTAATTCAGACTTGTGAATCTATGTGATACCAATCACAATCATGAGAAAACCTATACCCATGATGGAAAAAGCTATTATGGGGCCAACCACAATATTATACCATTCAATCATTAAAATGTCTGTTGGTTTATTCATGGTTCAACATCGATAATTGGGTTTAATGGATACCGAGTTTTTAC

mRNA sequence

ATTGAAATTGGATGGTGTAAAATCCAACGGCCAATACTGGCCTCGGGCAACCCAACAAAATAGTTGGACAGTTGGACTCATCTTCCTCTTTACAAATCCCAGAAAAATCCAAAATTCATTTGAATTACACTCCAAAAAAACTCAAACAATCTGTACTGTAGCGGCAAAAATAAGGACAACCCATTCTCCGCCATCCTCCACATTCAATCCTTTCCCTCCTTCCCACACGCAACTCTGTCAACAACACGATGCCTCGCACCGGCTTCGTCGGCTCCTTATCGACGCCCAAGGTCGACGTCGTCATCGACATGGGTAACCCCTTCCTCAACCTCACCGTCGATGGCTTCTTGAAGATCGGATCTGTCGCTGCTACTCGGGCGGCTGCTGAGGATGCTTATCATGTCGTTAGAAAAGGAACAATTTCTACTCACAATTTTGAAAACACGTTGAAGAAAATGTGTAAAGAAGGTGCATATTGGGGTAACATCTATAAATCTCATGCCAGAACTGTAGCTGGAGTTTATGTTGGTATGGAGTATGGAGTAGAAAGGATTCGCGGCACAAGAGATTGGAAAAATGCAATGATTGGAGGTGCTTTGACGGGAGCTTTAGTATCGGCAGCGAGCAACAACAACCGAGACAAAATTGTTATCGATGCAATTACAGGAGGGGCTGTTGCAACCGCTGCAGAGTTCATAAACTATCTTACTTGAGCCGAGGTTTTCCGGGCATTTTCGTGTCCTGTATCTTGTAAACCTCAAGCAGAAGAATAACCAGCTTGGTATGATTAGTCTCTCGTAGAGTTGCAGCCTAAAATATGAAGAAAAAGAGAAAAGAAAGTAATAGAATTATCTTCTTTCTTCATGAATGAGAGCCACATGTCTTGTTGAGGCTGTAATCGCAGCTATAGTTTCTTTGTTATAAGGAAATAAAGTATTGGTTAAGCTTTTAAGAAAGGGATATTTCTTCTTTTTTGTCTTTTTAAGTTTTTAACATAACAAATTTAAGTTGGTTCACCTTTTAATTCAGACTTGTGAATCTATGTGATACCAATCACAATCATGAGAAAACCTATACCCATGATGGAAAAAGCTATTATGGGGCCAACCACAATATTATACCATTCAATCATTAAAATGTCTGTTGGTTTATTCATGGTTCAACATCGATAATTGGGTTTAATGGATACCGAGTTTTTAC

Coding sequence (CDS)

ATGCCTCGCACCGGCTTCGTCGGCTCCTTATCGACGCCCAAGGTCGACGTCGTCATCGACATGGGTAACCCCTTCCTCAACCTCACCGTCGATGGCTTCTTGAAGATCGGATCTGTCGCTGCTACTCGGGCGGCTGCTGAGGATGCTTATCATGTCGTTAGAAAAGGAACAATTTCTACTCACAATTTTGAAAACACGTTGAAGAAAATGTGTAAAGAAGGTGCATATTGGGGTAACATCTATAAATCTCATGCCAGAACTGTAGCTGGAGTTTATGTTGGTATGGAGTATGGAGTAGAAAGGATTCGCGGCACAAGAGATTGGAAAAATGCAATGATTGGAGGTGCTTTGACGGGAGCTTTAGTATCGGCAGCGAGCAACAACAACCGAGACAAAATTGTTATCGATGCAATTACAGGAGGGGCTGTTGCAACCGCTGCAGAGTTCATAAACTATCTTACTTGA

Protein sequence

MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTISTHNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGALVSAASNNNRDKIVIDAITGGAVATAAEFINYLT

Homology

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BLAST of Lsi02G013610 vs. ExPASy Swiss-Prot
Match: Q41050 (Outer envelope pore protein 16, chloroplastic OS=Pisum sativum OX=3888 GN=OEP16 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.4e-64
Identity = 118/154 (76.62%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPR+ F GSLS+PK+DVVIDMGNPFLNLTVDGFLKIG+VAATR+ AED +H++RKG+IS+
Sbjct: 1   MPRSSFSGSLSSPKLDVVIDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISS 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           ++FE +LKKMCKEGAYWG         +AGVYVGMEYGVERIRGTRDWKNAM GGA+TGA
Sbjct: 61  NDFEKSLKKMCKEGAYWG--------AIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNN +DKI +DAITG A+ATAAEFINYLT
Sbjct: 121 LVSAASNNKKDKIAVDAITGAAIATAAEFINYLT 146

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BLAST of Lsi02G013610 vs. ExPASy Swiss-Prot
Match: Q9ZV24 (Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP161 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MP + F G++STPK+ V +DMGNPFLNLTVD FLKIG+V  T++ AED Y  + KG++S 
Sbjct: 1   MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
              E+ LKK+CKEG YWG           GVY+G EYG+ERIRG+RDWKNAM+ GA TGA
Sbjct: 61  STLEHALKKLCKEGVYWG--------AAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFIN 152
           ++SA     +D IVIDAI GGA+ATA++F+N
Sbjct: 121 VLSAVGKKGKDTIVIDAILGGALATASQFVN 143

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BLAST of Lsi02G013610 vs. ExPASy Swiss-Prot
Match: Q0WMZ5 (Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP162 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 48/163 (29.45%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 18  VIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGT---------------ISTHN 77
           + D+G+P LN   D F+K   V A +A + +AY  V  G                   H 
Sbjct: 21  LFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNVGPPSEITGNKKHR 80

Query: 78  FEN-----------TLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIR-GTRDWKN 137
           F N            +K   KE   WG          AG+Y G+ YG+  +R G  DW+N
Sbjct: 81  FPNLRGESSKSLDALVKNTGKESLQWG--------LAAGLYSGITYGMTEVRGGAHDWRN 140

Query: 138 AMIGGALTGA--LVSAASNNNRDKIVIDAITGGAVATAAEFIN 152
           + + GALTGA   ++ +   + +++V  A+TG A++TAA  ++
Sbjct: 141 SAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLS 175

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BLAST of Lsi02G013610 vs. ExPASy Swiss-Prot
Match: Q9LZH8 (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP164 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 33/108 (30.56%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 24  PFLNLTVDGFLKI---GSVAATRAAAEDAYHVVRKGTISTHNFENTLKKMCKEGAYWGNI 83
           P  +LTV+  L++   G +    A   DA  +   G +S  +F    K + + G   G  
Sbjct: 10  PCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSG-VSQASF--VAKSIGRFGFQCG-- 69

Query: 84  YKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGALVSAASNN 129
                  V+GV+     G++R RG  DW NA++GGA+ GA V+ ++ N
Sbjct: 70  ------LVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRN 106

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BLAST of Lsi02G013610 vs. ExPASy TrEMBL
Match: A0A6J1HZI5 (outer envelope pore protein 16, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469516 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 142/154 (92.21%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIS+
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTISS 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMCKEGAYWG        TVAGVYVGMEYGVERIRG RDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCKEGAYWG--------TVAGVYVGMEYGVERIRGRRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           +VSAASN+NRDKIVIDAITGGAVATAAEFINYLT
Sbjct: 121 MVSAASNSNRDKIVIDAITGGAVATAAEFINYLT 146

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BLAST of Lsi02G013610 vs. ExPASy TrEMBL
Match: A0A5D3BDN0 (Outer envelope pore protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002350 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMC EGAYWG         VAG YVGMEYGVER+RGTRDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCTEGAYWG--------AVAGAYVGMEYGVERVRGTRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNNRDK+VIDAITGGAVATAAEFINYLT
Sbjct: 121 LVSAASNNNRDKVVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. ExPASy TrEMBL
Match: A0A6J1HJY9 (outer envelope pore protein 16, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464797 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 142/154 (92.21%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIS+
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTISS 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMCKEGAYWG        TVAGVYVGMEYGVERIRG RDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCKEGAYWG--------TVAGVYVGMEYGVERIRGRRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           +VSAASN+NRDKIVIDAITGGAVATAAEFINYLT
Sbjct: 121 MVSAASNSNRDKIVIDAITGGAVATAAEFINYLT 146

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BLAST of Lsi02G013610 vs. ExPASy TrEMBL
Match: A0A1S3C572 (outer envelope pore protein 16, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497163 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMC EGAYWG         VAG YVGMEYGVER+RGTRDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCTEGAYWG--------AVAGAYVGMEYGVERVRGTRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNNRDK+VIDAITGGAVATAAEFINYLT
Sbjct: 121 LVSAASNNNRDKVVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. ExPASy TrEMBL
Match: A0A5N6R1E6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009013 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 128/154 (83.12%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPR+ F GS++TPKVDV IDMGNPFLNLTVDGFLKIG+VAATRA AEDAYH V+KG+IST
Sbjct: 1   MPRSRFSGSVTTPKVDVAIDMGNPFLNLTVDGFLKIGTVAATRAVAEDAYHAVKKGSIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFE+TLKKMCKEGAYWG        TVAGVYVGMEYGVERIRGTRDWKNAMIGGA+TGA
Sbjct: 61  HNFEHTLKKMCKEGAYWG--------TVAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNN+DK+V+DAITGGA+ATAAEF+NYLT
Sbjct: 121 LVSAASNNNKDKVVVDAITGGAIATAAEFLNYLT 146

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BLAST of Lsi02G013610 vs. NCBI nr
Match: XP_038893818.1 (outer envelope pore protein 16, chloroplastic [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 144/154 (93.51%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGF+GSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST
Sbjct: 1   MPRTGFIGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMCKEGAYWG        TVAGVYVGMEYGVER+RGTRDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCKEGAYWG--------TVAGVYVGMEYGVERVRGTRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT
Sbjct: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. NCBI nr
Match: XP_022964801.1 (outer envelope pore protein 16, chloroplastic [Cucurbita moschata] >XP_022970582.1 outer envelope pore protein 16, chloroplastic [Cucurbita maxima] >XP_023519566.1 outer envelope pore protein 16, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6583432.1 Outer envelope pore protein 16, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 2.1e-71
Identity = 142/154 (92.21%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIS+
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTISS 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMCKEGAYWG        TVAGVYVGMEYGVERIRG RDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCKEGAYWG--------TVAGVYVGMEYGVERIRGRRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           +VSAASN+NRDKIVIDAITGGAVATAAEFINYLT
Sbjct: 121 MVSAASNSNRDKIVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. NCBI nr
Match: XP_008457483.1 (PREDICTED: outer envelope pore protein 16, chloroplastic [Cucumis melo] >TYJ97413.1 outer envelope pore protein 16 [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 2.1e-71
Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENTLKKMC EGAYWG         VAG YVGMEYGVER+RGTRDWKNAMIGGALTGA
Sbjct: 61  HNFENTLKKMCTEGAYWG--------AVAGAYVGMEYGVERVRGTRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNNRDK+VIDAITGGAVATAAEFINYLT
Sbjct: 121 LVSAASNNNRDKVVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. NCBI nr
Match: KAE8023298.1 (hypothetical protein FH972_009013 [Carpinus fangiana])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 128/154 (83.12%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPR+ F GS++TPKVDV IDMGNPFLNLTVDGFLKIG+VAATRA AEDAYH V+KG+IST
Sbjct: 1   MPRSRFSGSVTTPKVDVAIDMGNPFLNLTVDGFLKIGTVAATRAVAEDAYHAVKKGSIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFE+TLKKMCKEGAYWG        TVAGVYVGMEYGVERIRGTRDWKNAMIGGA+TGA
Sbjct: 61  HNFEHTLKKMCKEGAYWG--------TVAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNN+DK+V+DAITGGA+ATAAEF+NYLT
Sbjct: 121 LVSAASNNNKDKVVVDAITGGAIATAAEFLNYLT 146

[Close]

BLAST of Lsi02G013610 vs. NCBI nr
Match: KAA0067730.1 (outer envelope pore protein 16 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 134/154 (87.01%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST
Sbjct: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
           HNFENT+   C     W        R VAG YVGMEYGVERIRGTRDWKNAMIGGALTGA
Sbjct: 61  HNFENTVSISCFRLKLW--------RAVAGAYVGMEYGVERIRGTRDWKNAMIGGALTGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFINYLT 155
           LVSAASNNNRDK+VIDAITGGAVATAAEFINYLT
Sbjct: 121 LVSAASNNNRDKVVIDAITGGAVATAAEFINYLT 146

[Close]

BLAST of Lsi02G013610 vs. TAIR 10
Match: AT2G28900.1 (outer plastid envelope protein 16-1 )

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1   MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST 60
           MP + F G++STPK+ V +DMGNPFLNLTVD FLKIG+V  T++ AED Y  + KG++S 
Sbjct: 1   MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query: 61  HNFENTLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGA 120
              E+ LKK+CKEG YWG           GVY+G EYG+ERIRG+RDWKNAM+ GA TGA
Sbjct: 61  STLEHALKKLCKEGVYWG--------AAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGA 120

Query: 121 LVSAASNNNRDKIVIDAITGGAVATAAEFIN 152
           ++SA     +D IVIDAI GGA+ATA++F+N
Sbjct: 121 VLSAVGKKGKDTIVIDAILGGALATASQFVN 143

[Close]

BLAST of Lsi02G013610 vs. TAIR 10
Match: AT4G16160.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 18  VIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTIST-------------HNFE 77
           + D+G+P LN   D F+K   V A +A + +AY  V  G  S              H F 
Sbjct: 21  LFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGFDSNNVGPPSEITGNKKHRFP 80

Query: 78  N-----------TLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIR-GTRDWKNAM 137
           N            +K   KE   WG          AG+Y G+ YG+  +R G  DW+N+ 
Sbjct: 81  NLRGESSKSLDALVKNTGKESLQWG--------LAAGLYSGITYGMTEVRGGAHDWRNSA 140

Query: 138 IGGALTGA--LVSAASNNNRDKIVIDAITGGAVATAAEFIN 152
           + GALTGA   ++ +   + +++V  A+TG A++TAA  ++
Sbjct: 141 VAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLS 173

[Close]

BLAST of Lsi02G013610 vs. TAIR 10
Match: AT4G16160.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-14
Identity = 48/163 (29.45%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 18  VIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGT---------------ISTHN 77
           + D+G+P LN   D F+K   V A +A + +AY  V  G                   H 
Sbjct: 21  LFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNVGPPSEITGNKKHR 80

Query: 78  FEN-----------TLKKMCKEGAYWGNIYKSHARTVAGVYVGMEYGVERIR-GTRDWKN 137
           F N            +K   KE   WG          AG+Y G+ YG+  +R G  DW+N
Sbjct: 81  FPNLRGESSKSLDALVKNTGKESLQWG--------LAAGLYSGITYGMTEVRGGAHDWRN 140

Query: 138 AMIGGALTGA--LVSAASNNNRDKIVIDAITGGAVATAAEFIN 152
           + + GALTGA   ++ +   + +++V  A+TG A++TAA  ++
Sbjct: 141 SAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLS 175

[Close]

BLAST of Lsi02G013610 vs. TAIR 10
Match: AT3G62880.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 33/108 (30.56%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 24  PFLNLTVDGFLKI---GSVAATRAAAEDAYHVVRKGTISTHNFENTLKKMCKEGAYWGNI 83
           P  +LTV+  L++   G +    A   DA  +   G +S  +F    K + + G   G  
Sbjct: 10  PCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSG-VSQASF--VAKSIGRFGFQCG-- 69

Query: 84  YKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGALVSAASNN 129
                  V+GV+     G++R RG  DW NA++GGA+ GA V+ ++ N
Sbjct: 70  ------LVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRN 106

[Close]

BLAST of Lsi02G013610 vs. TAIR 10
Match: AT3G62880.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 33/108 (30.56%), Postives = 53/108 (49.07%), Query Frame = 0


Query: 24  PFLNLTVDGFLKI---GSVAATRAAAEDAYHVVRKGTISTHNFENTLKKMCKEGAYWGNI 83
           P  +LTV+  L++   G +    A   DA  +   G +S  +F    K + + G   G  
Sbjct: 10  PCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSG-VSQASF--VAKSIGRFGFQCG-- 69

Query: 84  YKSHARTVAGVYVGMEYGVERIRGTRDWKNAMIGGALTGALVSAASNN 129
                  V+GV+     G++R RG  DW NA++GGA+ GA V+ ++ N
Sbjct: 70  ------LVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRN 106

The following BLAST results are available for this feature:

BLAST of Lsi02G013610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41050	7.4e-64	76.62	Outer envelope pore protein 16, chloroplastic OS=Pisum sativum OX=3888 GN=OEP16 ...	[more]
Q9ZV24	1.8e-46	57.62	Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q0WMZ5	1.3e-12	29.45	Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LZH8	8.6e-04	30.56	Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi02G013610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZI5	1.0e-71	92.21	outer envelope pore protein 16, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3BDN0	1.0e-71	91.56	Outer envelope pore protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1HJY9	1.0e-71	92.21	outer envelope pore protein 16, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S3C572	1.0e-71	91.56	outer envelope pore protein 16, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5N6R1E6	1.7e-66	83.12	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009013 PE=4 SV=1	[more]

BLAST of Lsi02G013610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893818.1	3.8e-73	93.51	outer envelope pore protein 16, chloroplastic [Benincasa hispida]	[more]
XP_022964801.1	2.1e-71	92.21	outer envelope pore protein 16, chloroplastic [Cucurbita moschata] >XP_022970582...	[more]
XP_008457483.1	2.1e-71	91.56	PREDICTED: outer envelope pore protein 16, chloroplastic [Cucumis melo] >TYJ9741...	[more]
KAE8023298.1	3.4e-66	83.12	hypothetical protein FH972_009013 [Carpinus fangiana]	[more]
KAA0067730.1	2.2e-65	87.01	outer envelope pore protein 16 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G013610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28900.1	1.3e-47	57.62	outer plastid envelope protein 16-1	[more]
AT4G16160.1	2.5e-14	30.43	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT4G16160.2	9.4e-14	29.45	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT3G62880.1	6.1e-05	30.56	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT3G62880.2	6.1e-05	30.56	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 58..143 e-value: 1.5E-10 score: 41.4
None	No IPR available	PANTHER	PTHR15371:SF2	OUTER ENVELOPE PORE PROTEIN 16-1, CHLOROPLASTIC	coord: 1..152
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013610.1	Lsi02G013610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:0045037	protein import into chloroplast stroma
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0034426	etioplast membrane
cellular_component	GO:0046930	pore complex
molecular_function	GO:0015171	amino acid transmembrane transporter activity
molecular_function	GO:0015288	porin activity
molecular_function	GO:0042803	protein homodimerization activity