Lsi02G013600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type domain-containing protein
Location	chr02: 18257635 .. 18258072 (-)
RNA-Seq Expression	Lsi02G013600
Synteny	Lsi02G013600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTATGACTGCCATGCTTACCGTTATTATACTATACTTCATCGGCTTCAGTTTCTACTACAGAACAAGAAATAATGAATCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA

mRNA sequence

ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTATGACTGCCATGCTTACCGTTATTATACTATACTTCATCGGCTTCAGTTTCTACTACAGAACAAGAAATAATGAATCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA

Coding sequence (CDS)

ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTATGACTGCCATGCTTACCGTTATTATACTATACTTCATCGGCTTCAGTTTCTACTACAGAACAAGAAATAATGAATCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA

Protein sequence

MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP

Homology

[Close]

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAV 60
           ++S P   TPP  PP    ++ D  +A+T  + ++ L+F+G FS Y+R   + S ST  +
Sbjct: 29  VTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDI 88

Query: 61  AG--------PMPALQEPEIVQIEAMAFS-------------YKEAKGSENDDYECVICL 120
           +           P      +V     +F              Y+  K ++  + +CVICL
Sbjct: 89  SSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICL 148

Query: 121 NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS 138
           + F+ GE  +++  CGH+FH  C+D WL +   CPLCRS
Sbjct: 149 SDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot
Match: Q9M0R7 (RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-12
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 30  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAK 89
           A +  I  Y I + +  R RN  + +       M   + P  +  EA+    +F Y EA+
Sbjct: 16  ASIGFIAFYIINY-YIRRCRNRAAAAGDIEEARMSPRRPPRGLDAEAIKSFPSFVYTEAR 75

Query: 90  GSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV 140
           G E    + ECV+CLN+FK  E  RL+  C H+FH  C+D WL     CP+CR+ V
Sbjct: 76  GIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130

[Close]

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-12
Identity = 45/161 (27.95%), Postives = 69/161 (42.86%), Query Frame = 0


Query: 10  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------- 69
           PP  PP  EL+             ++ L+ + F + + T+     + S   G        
Sbjct: 29  PPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDE 88

Query: 70  -----------------PMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGG 129
                            P   L    I  I  + F  K+ +G   D  EC +CLN+F+  
Sbjct: 89  DETEERDFSDFHHVWQIPTVGLHRSAINSITVVGF--KKGEGI-IDGTECSVCLNEFEED 148

Query: 130 EKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Sbjct: 149 ESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEP 186

[Close]

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-12
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 26  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM 85
           +A+  ++ +  L+F+G FS Y+R  +   ++  + AG          A +  ++  +E  
Sbjct: 49  MAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETF 108

Query: 86  -AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPL 138
             F Y + K  +    + EC ICLN+F+  E  RL+ KC H+FH  CID WL A   CP+
Sbjct: 109 PTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPV 168

[Close]

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 2   SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RT 61
           SSLP    PP    +  NF+L S      +  ++ + I++FI    +           R 
Sbjct: 25  SSLP--QEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSRD 84

Query: 62  RNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFK 121
           R +  ++ +A+ G +     L +  + Q  I+ +  F YK   G +N  ++C +CL +F+
Sbjct: 85  REDYFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFE 144

Query: 122 GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS 138
             +K RL+ KC H FH  CID WL++   CPLCRS
Sbjct: 145 TEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRS 177

[Close]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL
Match: A0A0A0LXE1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 87/148 (58.78%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAV 60
           MS  P++A  P     FE    D +  + A+   II+YF+ F+FY++T NNESE  T  V
Sbjct: 1   MSPPPYIAASPMPTNGFE-AIFDDFELLAAICFAIIVYFLSFTFYFKTGNNESEFDTGTV 60

Query: 61  AGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIF 120
              +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICLN+F+ G+KC+ MKKCGHIF
Sbjct: 61  EDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIF 120

Query: 121 HRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           H SCIDRWL  ER+CPLCRSCVC+VV P
Sbjct: 121 HCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL
Match: A0A5D3BGV5 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002280 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVA 60
           MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  
Sbjct: 1   MSSPAYIAASP-MPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDV 60

Query: 61  G---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEK 120
           G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +K
Sbjct: 61  GTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFEDAQK 120

Query: 121 CRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           CR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Sbjct: 121 CRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL
Match: A0A1S3C6H7 (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVA 60
           MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  
Sbjct: 1   MSSPAYIAASP-MPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDV 60

Query: 61  G---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEK 120
           G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +K
Sbjct: 61  GTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFEDAQK 120

Query: 121 CRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           CR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Sbjct: 121 CRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL
Match: A0A5A7VPW6 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00550 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.5e-37
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVA 60
           MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  
Sbjct: 1   MSSPAYIAASP-MPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDV 60

Query: 61  G---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGE 120
           G    +PA +E       EIVQIEAM FSY+EAK SEN      DDYECVICLN+F+  +
Sbjct: 61  GTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDDYECVICLNKFEDAQ 120

Query: 121 KCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Sbjct: 121 KCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL
Match: A0A6J1KAT3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 6   FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGP 65
           F A+PP   A    + L  T+  LA+ A+  +IILY I  +F+     +E ES S  AG 
Sbjct: 7   FAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA 66

Query: 66  MPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCI 125
           +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+ G+KCR M KCGHIFHR CI
Sbjct: 67  LPVVREPEIVRIEASVFSYREADGGHDD--ECAICLDEFEDGQKCRKMNKCGHIFHRRCI 126

Query: 126 DRWLMAERQCPLCRSCVCIVVKP 146
           DRWL  +R CPLCRSCVC+VV P
Sbjct: 127 DRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of Lsi02G013600 vs. NCBI nr
Match: XP_004151032.1 (RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-39
Identity = 87/148 (58.78%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESE-STSAV 60
           MS  P++A  P     FE    D +  + A+   II+YF+ F+FY++T NNESE  T  V
Sbjct: 1   MSPPPYIAASPMPTNGFE-AIFDDFELLAAICFAIIVYFLSFTFYFKTGNNESEFDTGTV 60

Query: 61  AGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECVICLNQFKGGEKCRLMKKCGHIF 120
              +P  +E EIVQIE M FS Y+EAKGSEN DDYECVICLN+F+ G+KC+ MKKCGHIF
Sbjct: 61  EDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIF 120

Query: 121 HRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           H SCIDRWL  ER+CPLCRSCVC+VV P
Sbjct: 121 HCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of Lsi02G013600 vs. NCBI nr
Match: XP_008457571.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVA 60
           MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  
Sbjct: 1   MSSPAYIAASP-MPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDV 60

Query: 61  G---PMPALQE------PEIVQIEAMAFSYKEAKGSEN-----DDYECVICLNQFKGGEK 120
           G    +PA +E       EIVQIEAM FSY+EAK SEN     DDYECVICLN+F+  +K
Sbjct: 61  GTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFEDAQK 120

Query: 121 CRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           CR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Sbjct: 121 CRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Lsi02G013600 vs. NCBI nr
Match: KAA0067735.1 (RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVA 60
           MSS  ++A  P  P N      D Y  + A+   II+YFI F+ Y++T NN+ +S  +  
Sbjct: 1   MSSPAYIAASP-MPMNGIEALFDDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSDQSDV 60

Query: 61  G---PMPALQE------PEIVQIEAMAFSYKEAKGSEN------DDYECVICLNQFKGGE 120
           G    +PA +E       EIVQIEAM FSY+EAK SEN      DDYECVICLN+F+  +
Sbjct: 61  GTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDDYECVICLNKFEDAQ 120

Query: 121 KCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           KCR MKKCGHIFHRSCIDRWL  ER+CPLCR+CVC+VVKP
Sbjct: 121 KCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of Lsi02G013600 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-32
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 6   FVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAGP 65
           F A+PP   A    + L  T+  LA+ A+  +IILY I  +F+     +E ES S  AG 
Sbjct: 7   FAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA 66

Query: 66  MPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCI 125
           +P ++EPEIV+IEA  FSY+EA G  +D  EC ICL++F+ G+KCR M KCGHIFHR CI
Sbjct: 67  LPVVREPEIVRIEASVFSYREADGGHDD--ECAICLDEFEDGQKCRKMNKCGHIFHRRCI 126

Query: 126 DRWLMAERQCPLCRSCVCIVVKP 146
           DRWL  +R CPLCRSCVC+VV P
Sbjct: 127 DRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of Lsi02G013600 vs. NCBI nr
Match: KAE8653246.1 (hypothetical protein Csa_019623 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-31
Identity = 73/110 (66.36%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 44  FYYRTR-----NNESE-STSAVAGPMPALQEPEIVQIEAMAFS-YKEAKGSEN-DDYECV 103
           F YR++     NNESE  T  V   +P  +E EIVQIE M FS Y+EAKGSEN DDYECV
Sbjct: 37  FSYRSKDQKAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECV 96

Query: 104 ICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           ICLN+F+ G+KC+ MKKCGHIFH SCIDRWL  ER+CPLCRSCVC+VV P
Sbjct: 97  ICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 146

[Close]

BLAST of Lsi02G013600 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-16
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 1   MSSLPFVATPPATPPNFELTSTDKYLAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAV 60
           ++S P   TPP  PP    ++ D  +A+T  + ++ L+F+G FS Y+R   + S ST  +
Sbjct: 29  VTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDI 88

Query: 61  AG--------PMPALQEPEIVQIEAMAFS-------------YKEAKGSENDDYECVICL 120
           +           P      +V     +F              Y+  K ++  + +CVICL
Sbjct: 89  SSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICL 148

Query: 121 NQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS 138
           + F+ GE  +++  CGH+FH  C+D WL +   CPLCRS
Sbjct: 149 SDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Lsi02G013600 vs. TAIR 10
Match: AT4G09100.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 30  AMLTVIILYFIGFSFYYRTRNNESESTSAVAGPMPALQEPEIVQIEAM----AFSYKEAK 89
           A +  I  Y I + +  R RN  + +       M   + P  +  EA+    +F Y EA+
Sbjct: 16  ASIGFIAFYIINY-YIRRCRNRAAAAGDIEEARMSPRRPPRGLDAEAIKSFPSFVYTEAR 75

Query: 90  GSEN--DDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCV 140
           G E    + ECV+CLN+FK  E  RL+  C H+FH  C+D WL     CP+CR+ V
Sbjct: 76  GIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130

[Close]

BLAST of Lsi02G013600 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 45/161 (27.95%), Postives = 69/161 (42.86%), Query Frame = 0


Query: 10  PPATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYYRTRNNESESTSAVAG-------- 69
           PP  PP  EL+             ++ L+ + F + + T+     + S   G        
Sbjct: 29  PPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDE 88

Query: 70  -----------------PMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGG 129
                            P   L    I  I  + F  K+ +G   D  EC +CLN+F+  
Sbjct: 89  DETEERDFSDFHHVWQIPTVGLHRSAINSITVVGF--KKGEGI-IDGTECSVCLNEFEED 148

Query: 130 EKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP 146
           E  RL+ KC H FH +CID WL++ + CPLCR+ V ++ +P
Sbjct: 149 ESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEP 186

[Close]

BLAST of Lsi02G013600 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-13
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 26  LAMTAMLTVIILYFIG-FSFYYRTRNNESESTSAVAGPM-------PALQEPEIVQIEAM 85
           +A+  ++ +  L+F+G FS Y+R  +   ++  + AG          A +  ++  +E  
Sbjct: 49  MAVIVVILIAALFFMGFFSIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETF 108

Query: 86  -AFSYKEAKGSE--NDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPL 138
             F Y + K  +    + EC ICLN+F+  E  RL+ KC H+FH  CID WL A   CP+
Sbjct: 109 PTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPV 168

[Close]

BLAST of Lsi02G013600 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-13
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 2   SSLPFVATPP---ATPPNFELTSTDKYLAMTAMLTVIILYFIGFSFYY----------RT 61
           SSLP    PP    +  NF+L S      +  ++ + I++FI    +           R 
Sbjct: 25  SSLP--QEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSRD 84

Query: 62  RNNESESTSAVAGPMPA---LQEPEIVQ--IEAM-AFSYKEAKGSENDDYECVICLNQFK 121
           R +  ++ +A+ G +     L +  + Q  I+ +  F YK   G +N  ++C +CL +F+
Sbjct: 85  REDYFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFE 144

Query: 122 GGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRS 138
             +K RL+ KC H FH  CID WL++   CPLCRS
Sbjct: 145 TEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRS 177

The following BLAST results are available for this feature:

BLAST of Lsi02G013600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJJ7	6.0e-15	30.19	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9M0R7	3.6e-12	35.34	RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1	[more]
Q9LX93	6.2e-12	27.95	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q8RXX9	8.1e-12	32.52	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q940Q4	1.4e-11	30.97	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]

BLAST of Lsi02G013600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE1	1.2e-39	58.78	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 P...	[more]
A0A5D3BGV5	5.8e-37	54.72	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C6H7	5.8e-37	54.72	RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 S...	[more]
A0A5A7VPW6	7.5e-37	54.38	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1KAT3	3.3e-32	53.15	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 P...	[more]

BLAST of Lsi02G013600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151032.1	2.6e-39	58.78	RING-H2 finger protein ATL66 [Cucumis sativus]	[more]
XP_008457571.1	1.2e-36	54.72	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 ...	[more]
KAA0067735.1	1.6e-36	54.38	RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]	[more]
XP_022998666.1	6.8e-32	53.15	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
KAE8653246.1	1.5e-31	66.36	hypothetical protein Csa_019623 [Cucumis sativus]	[more]

BLAST of Lsi02G013600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27940.1	4.2e-16	30.19	RING/U-box superfamily protein	[more]
AT4G09100.1	2.6e-13	35.34	RING/U-box superfamily protein	[more]
AT5G10380.1	4.4e-13	27.95	RING/U-box superfamily protein	[more]
AT3G05200.1	5.7e-13	32.52	RING/U-box superfamily protein	[more]
AT4G30400.1	9.8e-13	30.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 1.6E-7 score: 41.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..136 e-value: 7.2E-15 score: 55.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 13.079398
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 50..140 e-value: 1.9E-20 score: 74.3
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 16..138
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 16..138
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013600.1	Lsi02G013600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane