Lsi02G013580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr02: 18207574 .. 18208059 (-)
RNA-Seq Expression	Lsi02G013580
Synteny	Lsi02G013580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA

mRNA sequence

ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA

Coding sequence (CDS)

ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA

Protein sequence

MSSPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVHRFL

Homology

[Close]

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot
Match: Q8AWW4 (E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis OX=8355 GN=rnf128 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 85  AEEIPAAAEMGFREIKT-EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRW 144
           AE   A  ++  R IK  +++   DG  CA+CIE +   ++  ++  C HFFHK+CI+ W
Sbjct: 232 AEAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRIL-TCNHFFHKNCIDPW 291

Query: 145 LRIEMRCPLCRCFVHRFL 162
           L     CP+C+C + + L
Sbjct: 292 LLEHRTCPMCKCDILKSL 308

[Close]

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 93  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCP 152
           ++GF ++K  + G   +G  C+IC+  F E+E   ++  C H FH  CI+RWL+    CP
Sbjct: 135 KIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCP 194

Query: 153 LCR 155
           LCR
Sbjct: 195 LCR 197

[Close]

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 0


Query: 12  STRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVV---- 71
           S  +P  P   H   +  +  L+ A  +++V VI AL   FM  F  Y       V    
Sbjct: 21  SAGQPGTPDQRH-DPYAYSGSLSPAMAVVVVVVIAALF--FMGFFTVYIRHCTGAVDGSV 80

Query: 72  ------QEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGE 131
                 +    ++ +   +  ET E  P      + E+KT++IG      CAIC+  F +
Sbjct: 81  TPAGGARRRVTNATVARGLDAETIETFPTFV---YSEVKTQKIGK-GALECAICLNEFED 140

Query: 132 EEICGVIENCGHFFHKDCINRWLRIEMRCPLCR 155
           +E   ++  C H FH  CI  WL+  + CP+CR
Sbjct: 141 DETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCR 166

[Close]

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot
Match: Q06003 (Protein goliath OS=Drosophila melanogaster OX=7227 GN=gol PE=2 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-07
Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 31  SKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPA 90
           S L   S L +      LMI  +    +YY QR R +Q   + S+   +V ++   +IP 
Sbjct: 228 SSLNRTSVLFVSISFIVLMIISLVWLIFYYIQRFRYMQAKDQQSRNLCSVTKKAIMKIPT 287

Query: 91  AAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRC 150
                 +  K  +  D D   CAICIE +   +   ++  C H FHK+CI+ WL     C
Sbjct: 288 ------KTGKFSDEKDLDSDCCAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLIEHRTC 347

Query: 151 PLCRCFVHRF 161
           P+C+  V +F
Sbjct: 348 PMCKLDVLKF 350

[Close]

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 39/146 (26.71%), Postives = 64/146 (43.84%), Query Frame = 0


Query: 28  HLTSKLTIASGLMLVAVICALM-ISFMFIFHYY------------------YHQRLRVVQ 87
           H +S+ ++   +ML +VI   + +  +  FH Y                  + + L   +
Sbjct: 17  HGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAAR 76

Query: 88  EDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVI 147
           + T+SS     +     E+IP    +    +KT E        C++C+  F E++   V+
Sbjct: 77  DPTQSSSSLSPLDPTVLEKIP----IFVYSVKTHE---SPLEECSVCLSEFEEDDEGRVL 136

Query: 148 ENCGHFFHKDCINRWLRIEMRCPLCR 155
             CGH FH DCI+ W R    CPLCR
Sbjct: 137 PKCGHVFHVDCIDTWFRSRSSCPLCR 155

[Close]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL
Match: A0A6J1DVK4 (RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 92/155 (59.35%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 3   SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQ 62
           SPSPPP   +         IH  TFHLT +L +ASG M VAV+CA  IS MF+FHYY   
Sbjct: 4   SPSPPPQTTAA--------IHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYY--- 63

Query: 63  RLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEE 122
           + RV   DTES   P     +TAE+IPA+A + +R    EEI DC G RCAICIEGF EE
Sbjct: 64  KTRV--HDTESRSQP-----QTAEQIPASA-VAYR----EEIRDCGG-RCAICIEGFAEE 123

Query: 123 EICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV 158
           E CGVIENCGHFFHKDCI+RWL+IE RCPLCRC +
Sbjct: 124 EKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

[Close]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 38  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF- 97
           G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +    
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQ--TRTLDIEQRLHEHRTMQLLAQTQAEII 61

Query: 98  --REIKTEEIGDCDGRR-----------------------CAICIEGFGEEEICGVIENC 157
             R+  T+     +G                         CAICIE F +EEICGV+E+C
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESC 121

Query: 158 GHFFHKDCINRWLRIEMRCPLCRCFVH 159
           GH FH+DC+++WLRIE RCPLCRC VH
Sbjct: 122 GHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 38  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF- 97
           G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +    
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQ--TRTLDIEQRLHEHRTMQLLAQTQAEII 61

Query: 98  --REIKTEEIGDCDGRR-----------------------CAICIEGFGEEEICGVIENC 157
             R+  T+     +G                         CAICIE F +EEICGV+E+C
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESC 121

Query: 158 GHFFHKDCINRWLRIEMRCPLCRCFVH 159
           GH FH+DC+++WLRIE RCPLCRC VH
Sbjct: 122 GHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 81  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCI 140
           AEE A  I    ++ +R+IKT E  D D   CAICIEGF EEEICGV++ CGH FHK CI
Sbjct: 76  AEEEAASI--VTKVAYRDIKTTEEADVDD-YCAICIEGFEEEEICGVLDRCGHCFHKVCI 135

Query: 141 NRWLRIEMRCPLCRCFV 158
           ++WLRI  RCPLCRC +
Sbjct: 136 DQWLRIGSRCPLCRCLI 149

[Close]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL
Match: A0A6J1DYV0 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111024783 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 71/175 (40.57%), Postives = 91/175 (52.00%), Query Frame = 0


Query: 1   MSSPSPPPVPESTR--RPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHY 60
           MS P  PP   S +   P    + H  TF    K+    G   V  IC  +I   FI  Y
Sbjct: 1   MSFPPTPPPSFSVQYSLPVTVVITHRSTF--DPKI----GFGFVGFICFSLIVLFFIL-Y 60

Query: 61  YYHQRLRV----VQEDTES----SQIPGAVAEETAEEIPAAAEMGFRE--------IKTE 120
            YH+R+ +    V +D ES    S++   V  E A + P+       E        I+ E
Sbjct: 61  SYHRRIMLSQTRVYDDIESRVQVSRVFTIVLSERARQQPSPPPQTVEEASATAVAIIEAE 120

Query: 121 EIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV 158
           EI D D R CAIC EGF E+++C VIE CGHFFHKDC+++WL +E  CPLCRCFV
Sbjct: 121 EIIDSD-RDCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRCFV 167

[Close]

BLAST of Lsi02G013580 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 7.2e-67
Identity = 131/158 (82.91%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MSSPSPPPVPESTRRPNRPPL-IHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYY 60
           MSSPSPPPVPEST RP  PPL IH   FHLT++LTIASGLMLVAVICALMI FMFIFHY 
Sbjct: 1   MSSPSPPPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYC 60

Query: 61  YHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGF 120
           YHQRL VV  D ESSQ+ G  AEET+EEIPA+ +MGFREIKT EIGDCDGR+CAICIEGF
Sbjct: 61  YHQRLLVVHGDIESSQVSGTAAEETSEEIPASVKMGFREIKTGEIGDCDGRKCAICIEGF 120

Query: 121 GEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV 158
           GEEEICGVIENCGHFFH+DCINRWLRIE RCPLCRCFV
Sbjct: 121 GEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRCFV 158

[Close]

BLAST of Lsi02G013580 vs. NCBI nr
Match: XP_022158253.1 (RING-H2 finger protein ATL14-like [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 92/155 (59.35%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 3   SPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQ 62
           SPSPPP   +         IH  TFHLT +L +ASG M VAV+CA  IS MF+FHYY   
Sbjct: 4   SPSPPPQTTAA--------IHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYY--- 63

Query: 63  RLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEE 122
           + RV   DTES   P     +TAE+IPA+A + +R    EEI DC G RCAICIEGF EE
Sbjct: 64  KTRV--HDTESRSQP-----QTAEQIPASA-VAYR----EEIRDCGG-RCAICIEGFAEE 123

Query: 123 EICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFV 158
           E CGVIENCGHFFHKDCI+RWL+IE RCPLCRC +
Sbjct: 124 EKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

[Close]

BLAST of Lsi02G013580 vs. NCBI nr
Match: XP_022964751.1 (RING-H2 finger protein ATL64-like [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 81  AEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCI 140
           AEE A  I    ++ +R+IKT E  D D   CAICIEGF EEEICGV++ CGH FHK CI
Sbjct: 76  AEEEAASI--VTKVAYRDIKTTEEADVDD-YCAICIEGFEEEEICGVLDRCGHCFHKVCI 135

Query: 141 NRWLRIEMRCPLCRCFV 158
           ++WLRI  RCPLCRC +
Sbjct: 136 DQWLRIGSRCPLCRCLI 149

[Close]

BLAST of Lsi02G013580 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 38  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF- 97
           G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +    
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQ--TRTLDIEQRLHEHRTMQLLAQTQAEII 61

Query: 98  --REIKTEEIGDCDGRR-----------------------CAICIEGFGEEEICGVIENC 157
             R+  T+     +G                         CAICIE F +EEICGV+E+C
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESC 121

Query: 158 GHFFHKDCINRWLRIEMRCPLCRCFVH 159
           GH FH+DC+++WLRIE RCPLCRC VH
Sbjct: 122 GHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Lsi02G013580 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 38  GLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGF- 97
           G + V+V+C ++I F+F   + YH RLR+ Q  T +  I   + E    ++ A  +    
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQ--TRTLDIEQRLHEHRTMQLLAQTQAEII 61

Query: 98  --REIKTEEIGDCDGRR-----------------------CAICIEGFGEEEICGVIENC 157
             R+  T+     +G                         CAICIE F +EEICGV+E+C
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESC 121

Query: 158 GHFFHKDCINRWLRIEMRCPLCRCFVH 159
           GH FH+DC+++WLRIE RCPLCRC VH
Sbjct: 122 GHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Lsi02G013580 vs. TAIR 10
Match: AT2G37150.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 92  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCP 151
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP
Sbjct: 477 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 534

Query: 152 LCR 155
           +C+
Sbjct: 537 ICK 534

[Close]

BLAST of Lsi02G013580 vs. TAIR 10
Match: AT2G37150.2 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 92  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCP 151
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP
Sbjct: 477 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 534

Query: 152 LCR 155
           +C+
Sbjct: 537 ICK 534

[Close]

BLAST of Lsi02G013580 vs. TAIR 10
Match: AT2G37150.3 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 92  AEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCP 151
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++  CP
Sbjct: 530 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 587

Query: 152 LCR 155
           +C+
Sbjct: 590 ICK 587

[Close]

BLAST of Lsi02G013580 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 93  EMGFREIKTEEIG-DCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCP 152
           ++GF ++K  + G   +G  C+IC+  F E+E   ++  C H FH  CI+RWL+    CP
Sbjct: 135 KIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCP 194

Query: 153 LCR 155
           LCR
Sbjct: 195 LCR 197

[Close]

BLAST of Lsi02G013580 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-09
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 102 EEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCR 155
           EE  +   + C++C+  F +EE   +I NC H FH DCI+ WL+    CPLCR
Sbjct: 128 EEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCR 180

The following BLAST results are available for this feature:

BLAST of Lsi02G013580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AWW4	3.5e-08	35.90	E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis OX=8355 GN=rnf128 PE=2 SV=2	[more]
P0C041	4.6e-08	39.68	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q8LGA5	3.0e-07	28.10	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
Q06003	3.9e-07	30.77	Protein goliath OS=Drosophila melanogaster OX=7227 GN=gol PE=2 SV=3	[more]
Q9LZJ6	1.1e-06	26.71	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of Lsi02G013580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVK4	5.4e-36	59.35	RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788...	[more]
A0A5D3BE50	1.3e-16	37.41	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VMH1	1.3e-16	37.41	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1HJU0	1.3e-16	59.74	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]
A0A6J1DYV0	2.1e-16	40.57	E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Lsi02G013580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742489.1	7.2e-67	82.91	RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical pr...	[more]
XP_022158253.1	1.1e-35	59.35	RING-H2 finger protein ATL14-like [Momordica charantia]	[more]
XP_022964751.1	2.6e-16	59.74	RING-H2 finger protein ATL64-like [Cucurbita moschata]	[more]
KAA0067736.1	2.6e-16	37.41	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
TYJ97407.1	2.6e-16	37.41	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi02G013580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37150.1	2.5e-09	39.68	RING/U-box superfamily protein	[more]
AT2G37150.2	2.5e-09	39.68	RING/U-box superfamily protein	[more]
AT2G37150.3	2.5e-09	39.68	RING/U-box superfamily protein	[more]
AT4G17905.1	3.3e-09	39.68	RING/U-box superfamily protein	[more]
AT5G43420.1	7.3e-09	43.40	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 e-value: 3.9E-6 score: 36.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 e-value: 1.5E-12 score: 47.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 112..154 score: 13.13841
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 67..158 e-value: 1.5E-15 score: 58.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 29..155
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 29..155
None	No IPR available	CDD	cd16448	RING-H2	coord: 112..154 e-value: 2.82724E-9 score: 48.2171
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 99..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013580.1	Lsi02G013580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane