Lsi02G013510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr02: 18087378 .. 18088389 (-)
RNA-Seq Expression	Lsi02G013510
Synteny	Lsi02G013510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAGCTTCTCTGCGTAAAGTTAATGAGAACAATATTTGTATTTCAATTTTTCTAGGTATTTGGGATTAAATGCTAATTGCTACATCTATTTTCTTTTGACGATATCATTTCCAGGTTAGTCATTCTCCTGGACTATTGTGGTTCTATGGGTAAAGGGCGTGTTCGTGGCATGAAGTTAGGACCGACCTCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACTGAGATTGAGATTCATAATGAGGCCAATATGGAAGATTACCAAAATGTCGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCTAATATGCTCTCAATCTTGGAACAAAATGGTTTCATGCAATCCAACAATCTGACTGCTGCACATACAAATGGTGATTTGCCATACTGTATATACAAGAATCCTGGACGTGTTTGTAGCATGAGATTACAACCTACTTCGACTCAAGTGTTCCGATCTATCTCACATCGGAATATTCGTAACGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCGATATTAGAGGCTCAAATGACCAAGGTAGTTTCAATTTTACGACGAAATGGTCTCATGCAAGGCAACATATGAGCAGGACCAACCACAAAAGTTTCAAGACAGGTATGACTCTTTTTATGTTCTAGTCTTGTTCTTTTCTTAGTAAAGTTAATCATTATTATCATGATTATTTATTTATTAGGAACGAGGAGTTAACACACTAATGATGCTCAAGTTCGTGAAGTCAAACTCAGCATCTTTCATAATATTTTAGTCGTCTGTAATGATAAAAACAATTTGATTTCCTAACTTTAGGGTTAAATATTGTTATTTTGTTTAGTTTATTTTTTTTGGGATGATATCAAGTATGTACTAGAGTATTCTTCTATTTTCAACCTTTCTTGTGTTGAAATCTCATTGATGGTAGTATTAGTGTGCAGATGTTTATGTATAGATATGCATTAACAAAATTTCTTGTGCTTTTAATATTTCAATTATGTTC

mRNA sequence

ATAAAGCTTCTCTGCGTAAAGTTAGTCATTCTCCTGGACTATTGTGGTTCTATGGGTAAAGGGCGTGTTCGTGGCATGAAGTTAGGACCGACCTCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACTGAGATTGAGATTCATAATGAGGCCAATATGGAAGATTACCAAAATGTCGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCTAATATGCTCTCAATCTTGGAACAAAATGGTTTCATGCAATCCAACAATCTGACTGCTGCACATACAAATGGTGATTTGCCATACTGTATATACAAGAATCCTGGACGTGTTTGTAGCATGAGATTACAACCTACTTCGACTCAAGTGTTCCGATCTATCTCACATCGGAATATTCGTAACGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCGATATTAGAGGCTCAAATGACCAAGTTTCAATTTTACGACGAAATGGTCTCATGCAAGGCAACATATGAGCAGGACCAACCACAAAAGTTTCAAGACAGGAACGAGGAGTTAACACACTAATGATGCTCAAGTTCGTGAAGTCAAACTCAGCATCTTTCATAATATTTTAGTCGTCTGTAATGATAAAAACAATTTGATTTCCTAACTTTAGGGTTAAATATTGTTATTTTGTTTAGTTTATTTTTTTTGGGATGATATCAAGTATGTACTAGAGTATTCTTCTATTTTCAACCTTTCTTGTGTTGAAATCTCATTGATGGTAGTATTAGTGTGCAGATGTTTATGTATAGATATGCATTAACAAAATTTCTTGTGCTTTTAATATTTCAATTATGTTC

Coding sequence (CDS)

ATAAAGCTTCTCTGCGTAAAGTTAGTCATTCTCCTGGACTATTGTGGTTCTATGGGTAAAGGGCGTGTTCGTGGCATGAAGTTAGGACCGACCTCCACCATAGTGTTCAAGTCTACACCACGTCAATTTACTGAGATTGAGATTCATAATGAGGCCAATATGGAAGATTACCAAAATGTCGATGCTAGACTTTCGATATTAGAGTTGAAAATGGCTAATATGCTCTCAATCTTGGAACAAAATGGTTTCATGCAATCCAACAATCTGACTGCTGCACATACAAATGGTGATTTGCCATACTGTATATACAAGAATCCTGGACGTGTTTGTAGCATGAGATTACAACCTACTTCGACTCAAGTGTTCCGATCTATCTCACATCGGAATATTCGTAACGAGGCTCGTATGGATCAAAATGTAGATACTAGACTTTCGATATTAGAGGCTCAAATGACCAAGTTTCAATTTTACGACGAAATGGTCTCATGCAAGGCAACATATGAGCAGGACCAACCACAAAAGTTTCAAGACAGGAACGAGGAGTTAACACACTAA

Protein sequence

IKLLCVKLVILLDYCGSMGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILELKMANMLSILEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMDQNVDTRLSILEAQMTKFQFYDEMVSCKATYEQDQPQKFQDRNEELTH

Homology

[Close]

BLAST of Lsi02G013510 vs. ExPASy TrEMBL
Match: A0A5A7VKN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00670 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.3e-67
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 9   VILLDYCGSMGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILE 68
           V+LLD CGSMGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+E N+EDYQNVDARLSILE
Sbjct: 4   VVLLDCCGSMGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEGNLEDYQNVDARLSILE 63

Query: 69  LKMANMLSILEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHR 128
           LKMANM+SILEQNGFMQSNN T A+TNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHR
Sbjct: 64  LKMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHR 123

Query: 129 NIRNEARMDQNVDTRLSILEAQMTK 154
           NIRNEARMDQNVDTRLSILE QMTK
Sbjct: 124 NIRNEARMDQNVDTRLSILETQMTK 147

[Close]

BLAST of Lsi02G013510 vs. ExPASy TrEMBL
Match: A0A0A0LUW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523050 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 18  MGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILELKMANMLSI 77
           MGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+EAN+EDYQNVDARLSILELKMANM+SI
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEANLEDYQNVDARLSILELKMANMISI 60

Query: 78  LEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMD 137
           LEQNGFMQSNN TA HTNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHRNIRNEARMD
Sbjct: 61  LEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARMD 120

Query: 138 QNVDTRLSILEAQMTK 154
           QNVDTRLSILE QMTK
Sbjct: 121 QNVDTRLSILETQMTK 136

[Close]

BLAST of Lsi02G013510 vs. ExPASy TrEMBL
Match: A0A5D3BE38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002160 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.9e-63
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 18  MGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILELKMANMLSI 77
           MGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+E N+EDYQNVDARLSILELKMANM+SI
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEGNLEDYQNVDARLSILELKMANMISI 60

Query: 78  LEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMD 137
           LEQNGFMQSNN T A+TNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHRNIRNEARMD
Sbjct: 61  LEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARMD 120

Query: 138 QNVDTRLSILEAQMTK 154
           QNVDTRLSILE QMTK
Sbjct: 121 QNVDTRLSILETQMTK 135

[Close]

BLAST of Lsi02G013510 vs. NCBI nr
Match: KAA0067747.1 (hypothetical protein E6C27_scaffold352G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-67
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 9   VILLDYCGSMGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILE 68
           V+LLD CGSMGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+E N+EDYQNVDARLSILE
Sbjct: 4   VVLLDCCGSMGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEGNLEDYQNVDARLSILE 63

Query: 69  LKMANMLSILEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHR 128
           LKMANM+SILEQNGFMQSNN T A+TNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHR
Sbjct: 64  LKMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHR 123

Query: 129 NIRNEARMDQNVDTRLSILEAQMTK 154
           NIRNEARMDQNVDTRLSILE QMTK
Sbjct: 124 NIRNEARMDQNVDTRLSILETQMTK 147

[Close]

BLAST of Lsi02G013510 vs. NCBI nr
Match: KGN65730.1 (hypothetical protein Csa_019939 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 18  MGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILELKMANMLSI 77
           MGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+EAN+EDYQNVDARLSILELKMANM+SI
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEANLEDYQNVDARLSILELKMANMISI 60

Query: 78  LEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMD 137
           LEQNGFMQSNN TA HTNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHRNIRNEARMD
Sbjct: 61  LEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARMD 120

Query: 138 QNVDTRLSILEAQMTK 154
           QNVDTRLSILE QMTK
Sbjct: 121 QNVDTRLSILETQMTK 136

[Close]

BLAST of Lsi02G013510 vs. NCBI nr
Match: TYJ97397.1 (hypothetical protein E5676_scaffold194G002160 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-62
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 18  MGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEANMEDYQNVDARLSILELKMANMLSI 77
           MGKGRVRGMKLGPTSTIVFKSTPRQFTE EIH+E N+EDYQNVDARLSILELKMANM+SI
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEGNLEDYQNVDARLSILELKMANMISI 60

Query: 78  LEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMD 137
           LEQNGFMQSNN T A+TNGDLPYCIYKNPGRVCSMRLQP STQVFRSISHRNIRNEARMD
Sbjct: 61  LEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRNIRNEARMD 120

Query: 138 QNVDTRLSILEAQMTK 154
           QNVDTRLSILE QMTK
Sbjct: 121 QNVDTRLSILETQMTK 135

[Close]

BLAST of Lsi02G013510 vs. NCBI nr
Match: KAG7019185.1 (hypothetical protein SDJN02_18143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 26  MKLGPTSTIVFKSTPRQFTEIEIHNEA-NMEDYQNVDARLSILELKMANMLSILEQNGFM 85
           MKLGPT TIVFKSTPRQFTEIEIHNEA NMEDY+NVDARLSILELKMANMLSILEQNGFM
Sbjct: 1   MKLGPTPTIVFKSTPRQFTEIEIHNEANNMEDYENVDARLSILELKMANMLSILEQNGFM 60

Query: 86  QSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARMDQNVDTRL 145
           QSNNLTAAHTNGD PYCIYKNPGRVC M+LQPTSTQVFRSISHRNIRNEARMDQNVDTRL
Sbjct: 61  QSNNLTAAHTNGDSPYCIYKNPGRVCGMKLQPTSTQVFRSISHRNIRNEARMDQNVDTRL 120

Query: 146 SILEAQMTK 154
           SILEAQMTK
Sbjct: 121 SILEAQMTK 129

[Close]

BLAST of Lsi02G013510 vs. NCBI nr
Match: KAG6583423.1 (hypothetical protein SDJN03_19355, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 7.0e-58
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 18  MGKGRVRGMKLGPTSTIVFKSTPRQFTEIEIHNEA-NMEDYQNVDARLSILELKMANMLS 77
           MGKGRVRGMKLGPT TIVFKSTPRQFTEIEIHNEA NMEDY+NVDARLSILELKMANMLS
Sbjct: 1   MGKGRVRGMKLGPTPTIVFKSTPRQFTEIEIHNEANNMEDYENVDARLSILELKMANMLS 60

Query: 78  ILEQNGFMQSNNLTAAHTNGDLPYCIYKNPGRVCSMRLQPTSTQVFRSISHRNIRNEARM 137
           ILEQNGFMQSNNLTAAHTNGD PYCIYKNPGRVC M+LQPTSTQVFRSISHRNIRNEARM
Sbjct: 61  ILEQNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMKLQPTSTQVFRSISHRNIRNEARM 120

Query: 138 DQN 140
           DQN
Sbjct: 121 DQN 123

The following BLAST results are available for this feature:

BLAST of Lsi02G013510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G013510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKN2	2.3e-67	91.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LUW6	1.3e-65	94.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523050 PE=4 SV=1	[more]
A0A5D3BE38	5.9e-63	92.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi02G013510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067747.1	4.8e-67	91.72	hypothetical protein E6C27_scaffold352G00670 [Cucumis melo var. makuwa]	[more]
KGN65730.1	2.6e-65	94.12	hypothetical protein Csa_019939 [Cucumis sativus]	[more]
TYJ97397.1	1.2e-62	92.65	hypothetical protein E5676_scaffold194G002160 [Cucumis melo var. makuwa]	[more]
KAG7019185.1	2.0e-60	95.35	hypothetical protein SDJN02_18143, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583423.1	7.0e-58	95.12	hypothetical protein SDJN03_19355, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi02G013510 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013510.1	Lsi02G013510.1	mRNA