Lsi02G013360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G013360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Locationchr02: 17850906 .. 17851484 (+)
RNA-Seq ExpressionLsi02G013360
SyntenyLsi02G013360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTGATGATCAACAAGATGCAAGCTTTGAGTATCAAGAAGAACAAAGTGGTGTGAATAAATCAGCAGCTAGATCTTATGAGTGCACTTTTTGCAAAAGAGGCTTCACAAATGCACAAGCTTTAGGAGGCCATATGAACATACATAGAAAAGAGAAGGCCAAGCTCAAGCAATCAACATCGTCGCCTTCGTTGTCGTCGTCACCAAACAAGATGGTTTTAGACACCCTGAAGATGATTCTTCCGATGACGCCCCCAGCAAGGTTGTTGCCATGGTTTGTCTCGCCATCAACGGGAGAAGATCATGGTCGAAGCGGAGGTGGTCGAGAAGAAACCCTAATTTCAGAAGAAGTTCAACAACTCCCACTTTTCATCGAAAATCCCTCAAATATGGATCAAAATTTGGAGATTCATCAAGTTCTTCCGACCGAGGTTGATTCCGACCCAAAGCTAGGATCGTCGTTTCGACATGGTTCGTCTGTCTCCGAGCTGGATCTTGAGCTTAGGTTAGGACCTGAACCACAAAACTCAACTCCATCATCACTCCCTACTGGTAGGACTACACATTTCTTTTGA

mRNA sequence

ATGGAAATTGATGATCAACAAGATGCAAGCTTTGAGTATCAAGAAGAACAAAGTGGTGTGAATAAATCAGCAGCTAGATCTTATGAGTGCACTTTTTGCAAAAGAGGCTTCACAAATGCACAAGCTTTAGGAGGCCATATGAACATACATAGAAAAGAGAAGGCCAAGCTCAAGCAATCAACATCGTCGCCTTCGTTGTCGTCGTCACCAAACAAGATGGTTTTAGACACCCTGAAGATGATTCTTCCGATGACGCCCCCAGCAAGGTTGTTGCCATGGTTTGTCTCGCCATCAACGGGAGAAGATCATGGTCGAAGCGGAGGTGGTCGAGAAGAAACCCTAATTTCAGAAGAAGTTCAACAACTCCCACTTTTCATCGAAAATCCCTCAAATATGGATCAAAATTTGGAGATTCATCAAGTTCTTCCGACCGAGGTTGATTCCGACCCAAAGCTAGGATCGTCGTTTCGACATGGTTCGTCTGTCTCCGAGCTGGATCTTGAGCTTAGGTTAGGACCTGAACCACAAAACTCAACTCCATCATCACTCCCTACTGGTAGGACTACACATTTCTTTTGA

Coding sequence (CDS)

ATGGAAATTGATGATCAACAAGATGCAAGCTTTGAGTATCAAGAAGAACAAAGTGGTGTGAATAAATCAGCAGCTAGATCTTATGAGTGCACTTTTTGCAAAAGAGGCTTCACAAATGCACAAGCTTTAGGAGGCCATATGAACATACATAGAAAAGAGAAGGCCAAGCTCAAGCAATCAACATCGTCGCCTTCGTTGTCGTCGTCACCAAACAAGATGGTTTTAGACACCCTGAAGATGATTCTTCCGATGACGCCCCCAGCAAGGTTGTTGCCATGGTTTGTCTCGCCATCAACGGGAGAAGATCATGGTCGAAGCGGAGGTGGTCGAGAAGAAACCCTAATTTCAGAAGAAGTTCAACAACTCCCACTTTTCATCGAAAATCCCTCAAATATGGATCAAAATTTGGAGATTCATCAAGTTCTTCCGACCGAGGTTGATTCCGACCCAAAGCTAGGATCGTCGTTTCGACATGGTTCGTCTGTCTCCGAGCTGGATCTTGAGCTTAGGTTAGGACCTGAACCACAAAACTCAACTCCATCATCACTCCCTACTGGTAGGACTACACATTTCTTTTGA

Protein sequence

MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPSTGEDHGRSGGGREETLISEEVQQLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQNSTPSSLPTGRTTHFF
Homology
BLAST of Lsi02G013360 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 4   DDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSS 63
           DD  D+  +   +    + + +RSY C+FC RGF+NAQALGGHMNIHR+++AKL+Q    
Sbjct: 11  DDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQ---- 70

Query: 64  PSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPSTGEDHGRSGGGREETLISEEV---Q 123
                   K++ D    ++  +  + ++   ++    +          +  +  ++   Q
Sbjct: 71  --------KLMEDNKDDVVAESDASEVVSLDLNEQQQQQGEALTCDDHDQYVDNDISPKQ 130

Query: 124 QLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLG 173
           +L  +++  S +D N +  +V    +D     GSS  H   +  LDLELRLG
Sbjct: 131 KLEFWVQE-SKLDTN-DHGKVTEASID-----GSSSSHHRDIEVLDLELRLG 163

BLAST of Lsi02G013360 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 26 RSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSSPSLSSSPN 72
          RSY C+FCKR F +AQALGGHMN+HR+++A+L+    SPS SS+P+
Sbjct: 45 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQ-QSPSSSSTPS 89

BLAST of Lsi02G013360 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-08
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 13 YQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSS---PSLSSS 71
          + E+ +  +    RSY C+FC+R F +AQALGGHMN+HR+++A+LKQ+      P  SSS
Sbjct: 24 FAEDDAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLKQADDQYLFPKSSSS 83

BLAST of Lsi02G013360 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-08
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 6   QQDASFEYQEEQSGVNKS--AARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSS 65
           +++ +F   EE  G        RSY C+FC R F +AQALGGHMN+HR+++A+LKQ + S
Sbjct: 31  REERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

Query: 66  PSLSSSPNKMVLDTLKMIL 83
           PS +        D  + +L
Sbjct: 91  PSSTDQATPPECDRQQQVL 109

BLAST of Lsi02G013360 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-07
Identity = 24/50 (48.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 13 YQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTS 63
          Y+  ++G+     ++Y C+FC+R F +AQALGGHMN+HR+++AKL+Q  S
Sbjct: 34 YKNYEAGLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPS 83

BLAST of Lsi02G013360 vs. ExPASy TrEMBL
Match: A0A0A0LXG2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G524710 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.1e-73
Identity = 156/195 (80.00%), Postives = 166/195 (85.13%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID Q+DAS EYQEEQSGVN+S  RSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEIDQQEDASCEYQEEQSGVNQSTVRSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFV-SPSTGEDHGRSGGGREETLISEEV 120
            ++ SLSSSPNKMV+DT KM   M+ P R LPW V SPST ++HGRS GG EETLISEE 
Sbjct: 61  ITTSSLSSSPNKMVVDTPKM---MSTPTR-LPWVVISPSTRKEHGRSKGGLEETLISEEF 120

Query: 121 QQLPLFIE-NPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQNS 180
           QQLPLF+E NPSNMDQNLEI QVLP +VD D KLGS  RHGSSVSELDLELRLGPEPQNS
Sbjct: 121 QQLPLFVENNPSNMDQNLEIRQVLPIDVDCDSKLGSPSRHGSSVSELDLELRLGPEPQNS 180

Query: 181 T-PSSLPTGRTTHFF 193
           T  SSLPTGRTTHFF
Sbjct: 181 TSSSSLPTGRTTHFF 191

BLAST of Lsi02G013360 vs. ExPASy TrEMBL
Match: A0A5A7VKP9 (Transcriptional regulator TAC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001930 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.4e-70
Identity = 156/196 (79.59%), Postives = 165/196 (84.18%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID Q+DAS EYQ EQSGVN+S ARSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEIDQQEDASCEYQ-EQSGVNQSTARSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFV-SPSTGEDHGRSGG-GREETLISEE 120
            ++ SLSSSPNKMV+DT KM   M+ P R  PW V SPST E+HGRS   G EETLISEE
Sbjct: 61  ITTSSLSSSPNKMVVDTPKM---MSTPTR-FPWVVISPSTREEHGRSNRCGLEETLISEE 120

Query: 121 VQQLPLFIE-NPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQN 180
            QQLPLF+E NPSN+DQNLEI QVLP EVD D KLGS  RHGSSVSELDLELRLGPEPQN
Sbjct: 121 FQQLPLFVENNPSNIDQNLEIRQVLPIEVDCDSKLGSPSRHGSSVSELDLELRLGPEPQN 180

Query: 181 STPS-SLPTGRTTHFF 193
           STPS SLPTGRTTHFF
Sbjct: 181 STPSTSLPTGRTTHFF 191

BLAST of Lsi02G013360 vs. ExPASy TrEMBL
Match: A0A1S3C679 (transcriptional regulator TAC1-like OS=Cucumis melo OX=3656 GN=LOC103497134 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.4e-70
Identity = 156/196 (79.59%), Postives = 165/196 (84.18%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID Q+DAS EYQ EQSGVN+S ARSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEIDQQEDASCEYQ-EQSGVNQSTARSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFV-SPSTGEDHGRSGG-GREETLISEE 120
            ++ SLSSSPNKMV+DT KM   M+ P R  PW V SPST E+HGRS   G EETLISEE
Sbjct: 61  ITTSSLSSSPNKMVVDTPKM---MSTPTR-FPWVVISPSTREEHGRSNRCGLEETLISEE 120

Query: 121 VQQLPLFIE-NPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQN 180
            QQLPLF+E NPSN+DQNLEI QVLP EVD D KLGS  RHGSSVSELDLELRLGPEPQN
Sbjct: 121 FQQLPLFVENNPSNIDQNLEIRQVLPIEVDCDSKLGSPSRHGSSVSELDLELRLGPEPQN 180

Query: 181 STPS-SLPTGRTTHFF 193
           STPS SLPTGRTTHFF
Sbjct: 181 STPSTSLPTGRTTHFF 191

BLAST of Lsi02G013360 vs. ExPASy TrEMBL
Match: A0A6J1CKV7 (transcriptional regulator TAC1-like OS=Momordica charantia OX=3673 GN=LOC111012082 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 118/202 (58.42%), Postives = 136/202 (67.33%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID+         E+Q  + +   RSYECTFCKRGFTNAQALGGHMNIHRK+KAK+KQS
Sbjct: 1   MEIDEAGAGCEIQDEDQVMIQEEHIRSYECTFCKRGFTNAQALGGHMNIHRKDKAKMKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPST------GEDHGRSG----GGR 120
            SS SLS S NKM +D +  I+  + PAR LPW +  +T      GED G  G       
Sbjct: 61  ASSSSLSMSSNKMPVDDISKII--STPAR-LPWVIPSTTTEGRGRGEDRGEIGEITSSTM 120

Query: 121 EETLISEEVQQLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELR 180
           EETL   +VQQL LF E  SNMDQ   +HQVLP E  SD K+   F+HGS+VSELDLELR
Sbjct: 121 EETL-KGKVQQLQLF-EKSSNMDQKFRVHQVLPLEASSDQKMVPPFQHGSTVSELDLELR 180

Query: 181 LGPEPQNSTPSSLPTGRTTHFF 193
           LGPEPQNSTPSS PTG + HFF
Sbjct: 181 LGPEPQNSTPSSTPTGSSRHFF 197

BLAST of Lsi02G013360 vs. ExPASy TrEMBL
Match: A0A6P5ZTD0 (transcriptional regulator SUPERMAN-like OS=Durio zibethinus OX=66656 GN=LOC111303662 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-23
Identity = 82/185 (44.32%), Postives = 103/185 (55.68%), Query Frame = 0

Query: 14  QEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS----TSSPSL--- 73
           QE       + ARSY+CTFCKRGF+NAQALGGHMNIHR++KAKLKQ+    T+  SL   
Sbjct: 13  QESSDEQEANPARSYKCTFCKRGFSNAQALGGHMNIHRRDKAKLKQALPSETTQRSLDIP 72

Query: 74  ----SSSPNKMVLDTLKMIL------PMTPPARLLPWFVSPSTGEDHGRSGGGREETLIS 133
               S SPN     T++ I         + P R  PW +     +D  +     + T   
Sbjct: 73  KIIPSYSPNHPSWTTIQSIADSRSTQDRSSPGR-WPWVIQDDDDDDDNKR---TKTTCHV 132

Query: 134 EEVQQLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQ 182
            E++QLPLF E PS  DQN        ++V    +   S   GSS SELDLELRLGPEPQ
Sbjct: 133 GEIRQLPLFDEKPSITDQNPS------SQVQGGTEKDFSSNQGSSGSELDLELRLGPEPQ 187

BLAST of Lsi02G013360 vs. NCBI nr
Match: XP_038895788.1 (transcriptional regulator TAC1-like [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 4.7e-81
Identity = 165/192 (85.94%), Postives = 170/192 (88.54%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEI DQQDAS EYQEEQSGVNKSAARSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEI-DQQDASCEYQEEQSGVNKSAARSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPSTGEDHGRSGGGREETLISEEVQ 120
            SSPSLSSS NKMV+D  KMI   TPP   LPW VSPS  E H RSGGGREETLISEEVQ
Sbjct: 61  ISSPSLSSSSNKMVVDIPKMIPRTTPPQ--LPWVVSPSMSEGHRRSGGGREETLISEEVQ 120

Query: 121 QLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQNSTP 180
           QLPLF++N SNMDQNL+IHQVLP EV SDPKLGSSFRHGSS+SELDLELRLGPEPQNSTP
Sbjct: 121 QLPLFVKNTSNMDQNLKIHQVLPIEVASDPKLGSSFRHGSSISELDLELRLGPEPQNSTP 180

Query: 181 SSLPTGRTTHFF 193
           SSL TGRTTHFF
Sbjct: 181 SSLSTGRTTHFF 189

BLAST of Lsi02G013360 vs. NCBI nr
Match: XP_004145329.1 (transcriptional regulator TAC1 [Cucumis sativus] >KGN65749.1 hypothetical protein Csa_019602 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 156/195 (80.00%), Postives = 166/195 (85.13%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID Q+DAS EYQEEQSGVN+S  RSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEIDQQEDASCEYQEEQSGVNQSTVRSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFV-SPSTGEDHGRSGGGREETLISEEV 120
            ++ SLSSSPNKMV+DT KM   M+ P R LPW V SPST ++HGRS GG EETLISEE 
Sbjct: 61  ITTSSLSSSPNKMVVDTPKM---MSTPTR-LPWVVISPSTRKEHGRSKGGLEETLISEEF 120

Query: 121 QQLPLFIE-NPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQNS 180
           QQLPLF+E NPSNMDQNLEI QVLP +VD D KLGS  RHGSSVSELDLELRLGPEPQNS
Sbjct: 121 QQLPLFVENNPSNMDQNLEIRQVLPIDVDCDSKLGSPSRHGSSVSELDLELRLGPEPQNS 180

Query: 181 T-PSSLPTGRTTHFF 193
           T  SSLPTGRTTHFF
Sbjct: 181 TSSSSLPTGRTTHFF 191

BLAST of Lsi02G013360 vs. NCBI nr
Match: XP_008457447.1 (PREDICTED: transcriptional regulator TAC1-like [Cucumis melo] >KAA0067767.1 transcriptional regulator TAC1-like [Cucumis melo var. makuwa] >TYJ97379.1 transcriptional regulator TAC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 4.9e-70
Identity = 156/196 (79.59%), Postives = 165/196 (84.18%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID Q+DAS EYQ EQSGVN+S ARSYEC FCKRGFTNAQALGGHMNIHRKEKAKLKQS
Sbjct: 1   MEIDQQEDASCEYQ-EQSGVNQSTARSYECNFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFV-SPSTGEDHGRSGG-GREETLISEE 120
            ++ SLSSSPNKMV+DT KM   M+ P R  PW V SPST E+HGRS   G EETLISEE
Sbjct: 61  ITTSSLSSSPNKMVVDTPKM---MSTPTR-FPWVVISPSTREEHGRSNRCGLEETLISEE 120

Query: 121 VQQLPLFIE-NPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQN 180
            QQLPLF+E NPSN+DQNLEI QVLP EVD D KLGS  RHGSSVSELDLELRLGPEPQN
Sbjct: 121 FQQLPLFVENNPSNIDQNLEIRQVLPIEVDCDSKLGSPSRHGSSVSELDLELRLGPEPQN 180

Query: 181 STPS-SLPTGRTTHFF 193
           STPS SLPTGRTTHFF
Sbjct: 181 STPSTSLPTGRTTHFF 191

BLAST of Lsi02G013360 vs. NCBI nr
Match: XP_022141797.1 (transcriptional regulator TAC1-like [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-47
Identity = 118/202 (58.42%), Postives = 136/202 (67.33%), Query Frame = 0

Query: 1   MEIDDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 60
           MEID+         E+Q  + +   RSYECTFCKRGFTNAQALGGHMNIHRK+KAK+KQS
Sbjct: 1   MEIDEAGAGCEIQDEDQVMIQEEHIRSYECTFCKRGFTNAQALGGHMNIHRKDKAKMKQS 60

Query: 61  TSSPSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPST------GEDHGRSG----GGR 120
            SS SLS S NKM +D +  I+  + PAR LPW +  +T      GED G  G       
Sbjct: 61  ASSSSLSMSSNKMPVDDISKII--STPAR-LPWVIPSTTTEGRGRGEDRGEIGEITSSTM 120

Query: 121 EETLISEEVQQLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELR 180
           EETL   +VQQL LF E  SNMDQ   +HQVLP E  SD K+   F+HGS+VSELDLELR
Sbjct: 121 EETL-KGKVQQLQLF-EKSSNMDQKFRVHQVLPLEASSDQKMVPPFQHGSTVSELDLELR 180

Query: 181 LGPEPQNSTPSSLPTGRTTHFF 193
           LGPEPQNSTPSS PTG + HFF
Sbjct: 181 LGPEPQNSTPSSTPTGSSRHFF 197

BLAST of Lsi02G013360 vs. NCBI nr
Match: XP_022755817.1 (transcriptional regulator SUPERMAN-like [Durio zibethinus])

HSP 1 Score: 118.6 bits (296), Expect = 5.8e-23
Identity = 82/185 (44.32%), Postives = 103/185 (55.68%), Query Frame = 0

Query: 14  QEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS----TSSPSL--- 73
           QE       + ARSY+CTFCKRGF+NAQALGGHMNIHR++KAKLKQ+    T+  SL   
Sbjct: 13  QESSDEQEANPARSYKCTFCKRGFSNAQALGGHMNIHRRDKAKLKQALPSETTQRSLDIP 72

Query: 74  ----SSSPNKMVLDTLKMIL------PMTPPARLLPWFVSPSTGEDHGRSGGGREETLIS 133
               S SPN     T++ I         + P R  PW +     +D  +     + T   
Sbjct: 73  KIIPSYSPNHPSWTTIQSIADSRSTQDRSSPGR-WPWVIQDDDDDDDNKR---TKTTCHV 132

Query: 134 EEVQQLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLGPEPQ 182
            E++QLPLF E PS  DQN        ++V    +   S   GSS SELDLELRLGPEPQ
Sbjct: 133 GEIRQLPLFDEKPSITDQNPS------SQVQGGTEKDFSSNQGSSGSELDLELRLGPEPQ 187

BLAST of Lsi02G013360 vs. TAIR 10
Match: AT3G09290.1 (telomerase activator1 )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 4   DDQQDASFEYQEEQSGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSS 63
           DD  D+  +   +    + + +RSY C+FC RGF+NAQALGGHMNIHR+++AKL+Q    
Sbjct: 11  DDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQ---- 70

Query: 64  PSLSSSPNKMVLDTLKMILPMTPPARLLPWFVSPSTGEDHGRSGGGREETLISEEV---Q 123
                   K++ D    ++  +  + ++   ++    +          +  +  ++   Q
Sbjct: 71  --------KLMEDNKDDVVAESDASEVVSLDLNEQQQQQGEALTCDDHDQYVDNDISPKQ 130

Query: 124 QLPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLG 173
           +L  +++  S +D N +  +V    +D     GSS  H   +  LDLELRLG
Sbjct: 131 KLEFWVQE-SKLDTN-DHGKVTEASID-----GSSSSHHRDIEVLDLELRLG 163

BLAST of Lsi02G013360 vs. TAIR 10
Match: AT3G53820.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 23 SAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQS 61
          S AR Y C FC+RGF+NAQALGGHMNIHRK++AKL+Q+
Sbjct: 16 SQARPYICEFCERGFSNAQALGGHMNIHRKDRAKLRQA 53

BLAST of Lsi02G013360 vs. TAIR 10
Match: AT3G23140.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 55/171 (32.16%), Postives = 79/171 (46.20%), Query Frame = 0

Query: 18  SGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSS--------PSLSSS 77
           SG N+   R+Y+C  CKRGFTN QALGGH NIHR+E+ +   S+SS        P  S S
Sbjct: 14  SGENR---RTYDCDICKRGFTNPQALGGHNNIHRRERERYPSSSSSSHSFPFSLPLPSQS 73

Query: 78  PNKMV--------LDTLKMILPMTPPARLLPWFVSPSTGEDHGRSGGGREETLISEEVQQ 137
           P+             T++  L       + P   +   G      GGGR     S ++  
Sbjct: 74  PSSSTNFTNPPPYFPTIESYLHQGSQPPINPSHNTQYFGSSSSSRGGGRFAQGASHDL-N 133

Query: 138 LPLFIENPSNMDQNLEIHQVLPTEVDSDPKLGSSFRHGSSVSELDLELRLG 173
           L L +    +M+++ + H+  P    S P+ G          +LDL+LRLG
Sbjct: 134 LSLGL---GSMNEDDDTHRSPPETGGSQPQDG----------DLDLDLRLG 167

BLAST of Lsi02G013360 vs. TAIR 10
Match: AT5G43540.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 18 SGVNKSAARSYECTFCKRGFTNAQALGGHMNIHRKE---KAKLKQSTSSPSLSSS 70
          S V+    R YECTFCKRGFTNAQALGGHMNIHR++   KAK+ Q+ +  +LS +
Sbjct: 25 SSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHRRDRLNKAKV-QNDADVALSQT 78

BLAST of Lsi02G013360 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 26 RSYECTFCKRGFTNAQALGGHMNIHRKEKAKLKQSTSSPSLSSSPN 72
          RSY C+FCKR F +AQALGGHMN+HR+++A+L+    SPS SS+P+
Sbjct: 45 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQ-QSPSSSSTPS 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SR341.7e-0929.07Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1[more]
Q388951.9e-0860.87Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 S... [more]
O809425.5e-0847.54Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1[more]
Q9LHS97.2e-0840.51Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 G... [more]
Q9SLB82.7e-0748.00Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LXG25.1e-7380.00C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G524710 P... [more]
A0A5A7VKP92.4e-7079.59Transcriptional regulator TAC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3C6792.4e-7079.59transcriptional regulator TAC1-like OS=Cucumis melo OX=3656 GN=LOC103497134 PE=4... [more]
A0A6J1CKV71.6e-4758.42transcriptional regulator TAC1-like OS=Momordica charantia OX=3673 GN=LOC1110120... [more]
A0A6P5ZTD02.8e-2344.32transcriptional regulator SUPERMAN-like OS=Durio zibethinus OX=66656 GN=LOC11130... [more]
Match NameE-valueIdentityDescription
XP_038895788.14.7e-8185.94transcriptional regulator TAC1-like [Benincasa hispida][more]
XP_004145329.11.0e-7280.00transcriptional regulator TAC1 [Cucumis sativus] >KGN65749.1 hypothetical protei... [more]
XP_008457447.14.9e-7079.59PREDICTED: transcriptional regulator TAC1-like [Cucumis melo] >KAA0067767.1 tran... [more]
XP_022141797.13.4e-4758.42transcriptional regulator TAC1-like [Momordica charantia][more]
XP_022755817.15.8e-2344.32transcriptional regulator SUPERMAN-like [Durio zibethinus][more]
Match NameE-valueIdentityDescription
AT3G09290.11.2e-1029.07telomerase activator1 [more]
AT3G53820.11.6e-1073.68C2H2 and C2HC zinc fingers superfamily protein [more]
AT3G23140.12.7e-1032.16C2H2 and C2HC zinc fingers superfamily protein [more]
AT5G43540.16.0e-1060.00C2H2 and C2HC zinc fingers superfamily protein [more]
AT3G23130.11.3e-0960.87C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 28..50
e-value: 0.0097
score: 25.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 30..50
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 28..55
score: 11.988008
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 5..79
e-value: 5.0E-9
score: 37.8
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 28..53
e-value: 1.1E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..192
NoneNo IPR availablePANTHERPTHR45801OS07G0101800 PROTEINcoord: 4..179
NoneNo IPR availablePANTHERPTHR45801:SF58TRANSCRIPTION FACTOR C2H2 FAMILY-RELATEDcoord: 4..179
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 26..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G013360.1Lsi02G013360.1mRNA