Lsi02G013270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G013270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEncodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
Locationchr02: 17759783 .. 17763474 (-)
RNA-Seq ExpressionLsi02G013270
SyntenyLsi02G013270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCAAGCCTCCTCTTTCGTTGCCGATCTTTTCGATGTCAAGGAGCCGCCATTGTCATCCGCATCAGGAGTCTTTGCAGCAATCTTTCCATCTCCACAGAAGGTAATGCTGCTCTTTTTGAACTGCTCCTTAACTCATACATCGGGCTGTTATGTGCTAAGGATTAGGAGGATGGTTTTTTGAAACTTATGTAGTATTTTCTAAAGTTCATTGCTTAAGGTCCCCCTATTTTTTCGCTTATTGGCAATGATATATTTTTGTCCTGAATTCCCACCTCGACCAGTATTGCAAGTTCTGTTGCAGGAATCTTGTGTAAAGTTTTTATTGCAAACCTTCACATATATTTCATTTTAGTTCTTATATTTCCAAATATTTGGTTCTGATCCTTAAACTTTCACCAATTGTTATTATTATATATAGCAGAGATCTTTGGCCATCTGTCATCGTTTTTGGTATCAAACTCGATTTTTGTGACATAGAATTTGAGTCTGCATTTGTACTCGAATGTTATATGAATATTTATTGTTAAGGACTAAAATGAACTTTTACTTCAAAAATAAAACAGGACGTTCAAACTACAGGGAGGGACCATGAAGTCAACAATAAGATTTATACATGTTATTCCTTACATTTCATACTCTTCCTTCTTTATTTTAATTTTACATTTCTGAAAAATGGTAATTATATGGACCTGGATCATTCAGGCGCCACAGAGTCATTGTCAAACCATCATTTGTTAGAACATTATTATTTTTCTAATTTTCAGGGGGGAGGCAGGAATCCTTCTAGCTCTGGGGATTGGCTAAAACAGACCAATGGAAATCAACCACACCACACCAGACAAGGAAATTCAGGTGTGTGAATTGGAATATCAATCCCGTTAAAACTGATGGACAGAAGGGTATGATATGCAAATTCACAAATCACAGGAATGGATCTTTTGAAACCATTTAAAAATTATATATATATGAGTATATCATTTATAAAATTCCTAAACTGCAAGAGTATAATTTATAACTATTTCTAATAATAAAAAAAGATAAGAGCAAAAGAAAGGGAAACCACAGGAGTATAATTCTCAATTTTACACTGTTCCCAAGAAACAAGAAATCAAGTTATACCTAACAAAACCAGATCTGATAATTTCAAGGAGGGAGTTTGGAGCCTTGTCATCTGAGTTCATCTTTATACTATGGAGGACAAGATGGCTACTCCCAGGCCCCATCAGCTGGACCATCCCCATCCCCACCCCCCACCGTGAGTATACTTTCTTGATCAATTTGGATCATTGTCAAAAATGTTTGTTCTCTGTTGTAACTTTTATGATTTCATCAGCCTGATCATAAACTGAAAGTAAAATTGATTGTTTTTCTTCTGTTGTTGCCAATTCATTGATGAACCAGATGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAATTGGTGGCAAGGTACTAATAATGTAATGGACGAAGTTGTAGGAATCTGTTGACTCCGTTTTATTCTCTGATTTCAAATTCTTTTGTAGGTTCTCTTTATTATTAGAACATCTGCCTTGCCTCGGTGGCGTATGAATTCCCACCTATTTTCTAAGGTATGTCGTTGATTACTTATCTTATGATGTTATTTTTGTCTGCATAAATGTATATTTCAAAGCCTTTTTGTTAGTTACAATGAACTCAGAGTGAACTTGAGAGGTTTATTTGATGATGCCTACATTTACTTACATCTCGTGATTGAAATGTCCTTGAAATATTAGAATCCACAATCAGTGACATTGGTTGTTTGAAAGTGAAATTTCAAACTGAGCTTGATTCGACTAAGAATAAAGTCAACCAAGAACGGGACTTGTCTTTCTCAGTTAGAACTGAAGTTGATTCACAATCACTTTCCTTTTATTAAGTAATAATTCCATGAGCTGGGAGCATAAAAATTATTTGAACTATAGAGAATTCAATTGGAACCAAGGTTGTTAAACTTCCATCGCCCATGCCTATTCAGTTTTCACCCACTTGATATTATAAAGCCTAGAAGCTGCTTCCTTGTGGACCCACTAACATACCAAATAAATAGGAAAATTCCAAACTTTTAGTCAAATTATCATTTAATCTATAGTTTTTATTTATTAAATCCCATATGACTTTTCGATGTCACTGTTGTGCGAAGATTTAGGAGTTGTTTGGTGACTTTGTTGTTTCTCATTTCTGATGATTTAGATATATGTGCATTTAAATGATGTTTCCTGGTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTTCCTTTTCTTTTAGATGAGAAACAAAGTTTTCCTTTGTTTGTGAAAAATTACGAACAAATACATAAAATATAAAACTATTTCTCAAAAACTATACCTCATATGTTCCTCCCTAATGCCAACATGGACATAGCTCAACTAGCATGAACTTGTACTATCAACTTCGAGGTCTGAGGTTCAACCCGCCATCCTACATATTGTCCAAAAAAAAAAAAACGTCCCTCCCTGATTTGTGTCGATAACGAACAGGATATAACTCCAAGGCTCTTCTTAATCCGAGTATAGCTTAGTGGATGTGGCATTAATGACTGTCCTAGGTCGATGATTCGATCTCTCGCATCTGGACTAACTGAACTCATTATCTTTATTTGTCTCAATATCAAAGAGAAGCATTGAATTTTGCCCATTCCTCCCACTCCCACTACCAATGTCTTGCCTTTGTGGAAAACAAATCTGTCATTTCTTTCCAACCATATATTCTTTAGTGTTTGGTTTAATAGCATTGACAAATAGAATCTTTGTTTTCTACTTTAAAGGATGGATGCAAAGCATTTGAACCATATTTCCATCCAAAGGGAAGTGGAAGCCGGCCAATCCAAACATTTTTATGAGAGCGACCTAACTCTTCATGCTATAAGGAAAAAGGAATAAAAGATGATTCAATTCTTATGTTTTAAGATATGTTTCTACAATTATATATACATCTCAGGGACAAAAGTAGAATTCCCTTCCTGCTTTTCAATTCTTAGACATTACTAAATATATATCATAGATGGCAGTTAAAACTTTCATCTTTTAGCTTTAAGAGTTTTTATTAATGTTGAAATCATGGGTTGGCACATTTGTCGGTTTGGTCGGTTGGTTTGAGGTAGGCCAATGTCACTAGTTAAAAATCTTTACTAATGCGACGTGATGGTTTGAGGGTGAAGGGAGCGGCGTGGGCAGTGAGATGGGATAATCTGTATCGGATATACCTACTATGGTTTTGGTTAGTTTGGTCGGTTTACTTTGTTCCCCTCTCACATTCATTTCTATTCAATGCATTTTGTTTATGTGGTAGAGGGATTAGGCTTCTCACCTTGAAATGCTTTCTCTTTTTGGGTTCAGGAATTCATAAAGCAGCAGAGAAGATGAAGCTTTGAAGTTGGATTTACATTTTATATTACATATTGTGTATACTGTTTCAAATTTCTTGTTTGGTTTTTACTTTTACATTTGAAAATGGTGTGGAGTTTTCCGTATTTTCTTTTCTCTGATTTCTCTTTTATGAAAAGCTTTGCTGTTTCTTATATTTGCTGTCTATGGTGAAAAATCCACATAAATAATCTTTCTAAAGAATTCCCTAATAATGATATTTAAGGATAAATGCAAATTAAGTCCTTTGCATG

mRNA sequence

TATCAAGCCTCCTCTTTCGTTGCCGATCTTTTCGATGTCAAGGAGCCGCCATTGTCATCCGCATCAGGAGTCTTTGCAGCAATCTTTCCATCTCCACAGAAGGTAATGCTGCTCTTTTTGAACTGCTCCTTAACTCATACATCGGGCTGTTATGTGCTAAGGATTAGGAGGATGGGGGGAGGCAGGAATCCTTCTAGCTCTGGGGATTGGCTAAAACAGACCAATGGAAATCAACCACACCACACCAGACAAGGAAATTCAGGAGGGAGTTTGGAGCCTTGTCATCTGAGTTCATCTTTATACTATGGAGGACAAGATGGCTACTCCCAGGCCCCATCAGCTGGACCATCCCCATCCCCACCCCCCACCATGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAATTGGTGGCAAGGTACTAATAATGTAATGGACGAAGTTGTTCTCTTTATTATTAGAACATCTGCCTTGCCTCGGTGGCGTATGAATTCCCACCTATTTTCTAAGGGAGCGGCGTGGGCAGTGAGATGGGATAATCTGTATCGGATATACCTACTATGGTTTTGGAATTCATAAAGCAGCAGAGAAGATGAAGCTTTGAAGTTGGATTTACATTTTATATTACATATTGTGTATACTGTTTCAAATTTCTTGTTTGGTTTTTACTTTTACATTTGAAAATGGTGTGGAGTTTTCCGTATTTTCTTTTCTCTGATTTCTCTTTTATGAAAAGCTTTGCTGTTTCTTATATTTGCTGTCTATGGTGAAAAATCCACATAAATAATCTTTCTAAAGAATTCCCTAATAATGATATTTAAGGATAAATGCAAATTAAGTCCTTTGCATG

Coding sequence (CDS)

TATCAAGCCTCCTCTTTCGTTGCCGATCTTTTCGATGTCAAGGAGCCGCCATTGTCATCCGCATCAGGAGTCTTTGCAGCAATCTTTCCATCTCCACAGAAGGTAATGCTGCTCTTTTTGAACTGCTCCTTAACTCATACATCGGGCTGTTATGTGCTAAGGATTAGGAGGATGGGGGGAGGCAGGAATCCTTCTAGCTCTGGGGATTGGCTAAAACAGACCAATGGAAATCAACCACACCACACCAGACAAGGAAATTCAGGAGGGAGTTTGGAGCCTTGTCATCTGAGTTCATCTTTATACTATGGAGGACAAGATGGCTACTCCCAGGCCCCATCAGCTGGACCATCCCCATCCCCACCCCCCACCATGAAGAAAAGTGGGGGAGAAGATGATCCAAATGGAAACAACTCTCAACCTGCTTCTAGGGGAAATTGGTGGCAAGGTACTAATAATGTAATGGACGAAGTTGTTCTCTTTATTATTAGAACATCTGCCTTGCCTCGGTGGCGTATGAATTCCCACCTATTTTCTAAGGGAGCGGCGTGGGCAGTGAGATGGGATAATCTGTATCGGATATACCTACTATGGTTTTGGAATTCATAA

Protein sequence

YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGGRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSPPPTMKKSGGEDDPNGNNSQPASRGNWWQGTNNVMDEVVLFIIRTSALPRWRMNSHLFSKGAAWAVRWDNLYRIYLLWFWNS
Homology
[Close]
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match: A0A6J1I4B7 (uncharacterized protein LOC111469517 OS=Cucurbita maxima OX=3661 GN=LOC111469517 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.4e-54
Identity = 114/150 (76.00%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPP +S+S VFAAIFPSPQK                        GG
Sbjct: 8   YQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQK------------------------GG 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQ NGNQP H RQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP
Sbjct: 68  GRNSSSSGDWLKQANGNQPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
            PT+KKSGGEDDPNGNN QPASRGNWWQG+
Sbjct: 128 APTLKKSGGEDDPNGNNFQPASRGNWWQGS 133

[Close]
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match: A0A6J1HJ44 (uncharacterized protein LOC111464929 OS=Cucurbita moschata OX=3662 GN=LOC111464929 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 113/150 (75.33%), Postives = 117/150 (78.00%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPP +S+S VFAAIFPSPQK                        GG
Sbjct: 8   YQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQK------------------------GG 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQ NGNQP H RQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAG SPSP
Sbjct: 68  GRNSSSSGDWLKQANGNQPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGLSPSP 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
            PT+KKSGGEDDPNGNN QPASRGNWWQG+
Sbjct: 128 APTLKKSGGEDDPNGNNFQPASRGNWWQGS 133

[Close]
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match: A0A5D3BEB7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001770 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.0e-52
Identity = 116/153 (75.82%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQ SSFVADLFDVKE PLSSASG FA IFPSPQK                        G 
Sbjct: 8   YQTSSFVADLFDVKEAPLSSASGAFATIFPSPQK------------------------GA 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSS DWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSP P
Sbjct: 68  GRNSSSSVDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPLP 127

Query: 121 PP--TMKKSGG-EDDPNGNNSQPASRGNWWQGT 151
           PP  TMKKSGG +DDPNGNNSQPASRGNWWQG+
Sbjct: 128 PPPHTMKKSGGQQDDPNGNNSQPASRGNWWQGS 136

[Close]
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match: A0A1S3C5M6 (uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.0e-52
Identity = 116/153 (75.82%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQ SSFVADLFDVKE PLSSASG FA IFPSPQK                        G 
Sbjct: 8   YQTSSFVADLFDVKEAPLSSASGAFATIFPSPQK------------------------GA 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSS DWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSP P
Sbjct: 68  GRNSSSSVDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPLP 127

Query: 121 PP--TMKKSGG-EDDPNGNNSQPASRGNWWQGT 151
           PP  TMKKSGG +DDPNGNNSQPASRGNWWQG+
Sbjct: 128 PPPHTMKKSGGQQDDPNGNNSQPASRGNWWQGS 136

[Close]
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match: A0A0A0LXG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.3e-51
Identity = 115/153 (75.16%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKE PLSSASG FA IFPSPQK                        G 
Sbjct: 8   YQASSFVADLFDVKEAPLSSASGAFATIFPSPQK------------------------GA 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSS DWLKQTNG+QPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQA SAGPSP P
Sbjct: 68  GRNSSSSVDWLKQTNGSQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQATSAGPSPLP 127

Query: 121 PP--TMKKSGG-EDDPNGNNSQPASRGNWWQGT 151
           PP  TMKKSGG +DDPNGNNSQPASRGNWWQG+
Sbjct: 128 PPPHTMKKSGGQQDDPNGNNSQPASRGNWWQGS 136

[Close]
BLAST of Lsi02G013270 vs. NCBI nr
Match: KAG6583402.1 (hypothetical protein SDJN03_19334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-53
Identity = 121/196 (61.73%), Postives = 136/196 (69.39%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPP +S+S VFAAIFPSPQK                        GG
Sbjct: 8   YQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQK------------------------GG 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQ NGNQP H RQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAG SPSP
Sbjct: 68  GRNSSSSGDWLKQANGNQPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGLSPSP 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGTNNVMDEVVLFIIRTSALPRWRMNSHLFSKG 180
            PT+KKSGGEDDPNGNN QPASRGNWWQGT+    +  L ++     P ++    + ++ 
Sbjct: 128 APTLKKSGGEDDPNGNNFQPASRGNWWQGTDK---DDCLALVAHEFPPIFQ---GIHNEA 173

Query: 181 AAWAVRWDNLYRIYLL 197
           A W+   D  Y +Y +
Sbjct: 188 AQWSFELDLRYIVYTI 173

[Close]
BLAST of Lsi02G013270 vs. NCBI nr
Match: XP_022970583.1 (uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023519303.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519304.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023519305.1 uncharacterized protein LOC111782742 [Cucurbita pepo subsp. pepo] >XP_023521040.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo] >XP_023521041.1 uncharacterized protein LOC111784637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-53
Identity = 114/150 (76.00%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPP +S+S VFAAIFPSPQK                        GG
Sbjct: 8   YQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQK------------------------GG 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQ NGNQP H RQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP
Sbjct: 68  GRNSSSSGDWLKQANGNQPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
            PT+KKSGGEDDPNGNN QPASRGNWWQG+
Sbjct: 128 APTLKKSGGEDDPNGNNFQPASRGNWWQGS 133

[Close]
BLAST of Lsi02G013270 vs. NCBI nr
Match: XP_038894691.1 (uncharacterized protein LOC120083160 [Benincasa hispida] >XP_038894692.1 uncharacterized protein LOC120083160 [Benincasa hispida] >XP_038894693.1 uncharacterized protein LOC120083160 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 3.3e-53
Identity = 117/150 (78.00%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPPLSS SGVFAAIF SPQK                        G 
Sbjct: 8   YQASSFVADLFDVKEPPLSSTSGVFAAIFSSPQK------------------------GR 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQTNGNQP HTRQGNS GSLEPCHLSSSLYYGGQDGYSQAPSAGPSP  
Sbjct: 68  GRNSSSSGDWLKQTNGNQPRHTRQGNS-GSLEPCHLSSSLYYGGQDGYSQAPSAGPSPPS 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
           PPTMKKSGGEDDPNGNNSQPASRGNWWQG+
Sbjct: 128 PPTMKKSGGEDDPNGNNSQPASRGNWWQGS 132

[Close]
BLAST of Lsi02G013270 vs. NCBI nr
Match: XP_022964980.1 (uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964982.1 uncharacterized protein LOC111464929 [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 2.8e-52
Identity = 113/150 (75.33%), Postives = 117/150 (78.00%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQASSFVADLFDVKEPP +S+S VFAAIFPSPQK                        GG
Sbjct: 8   YQASSFVADLFDVKEPPSTSSSEVFAAIFPSPQK------------------------GG 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSSGDWLKQ NGNQP H RQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAG SPSP
Sbjct: 68  GRNSSSSGDWLKQANGNQPSHARQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGLSPSP 127

Query: 121 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
            PT+KKSGGEDDPNGNN QPASRGNWWQG+
Sbjct: 128 APTLKKSGGEDDPNGNNFQPASRGNWWQGS 133

[Close]
BLAST of Lsi02G013270 vs. NCBI nr
Match: XP_008457434.1 (PREDICTED: uncharacterized protein LOC103497123 [Cucumis melo] >KAA0031766.1 uncharacterized protein E6C27_scaffold848G00050 [Cucumis melo var. makuwa] >TYJ97366.1 uncharacterized protein E5676_scaffold194G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 6.2e-52
Identity = 116/153 (75.82%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 1   YQASSFVADLFDVKEPPLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGG 60
           YQ SSFVADLFDVKE PLSSASG FA IFPSPQK                        G 
Sbjct: 8   YQTSSFVADLFDVKEAPLSSASGAFATIFPSPQK------------------------GA 67

Query: 61  GRNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 120
           GRN SSS DWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSP P
Sbjct: 68  GRNSSSSVDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPLP 127

Query: 121 PP--TMKKSGG-EDDPNGNNSQPASRGNWWQGT 151
           PP  TMKKSGG +DDPNGNNSQPASRGNWWQG+
Sbjct: 128 PPPHTMKKSGGQQDDPNGNNSQPASRGNWWQGS 136

[Close]
BLAST of Lsi02G013270 vs. TAIR 10
Match: AT5G59080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-16
Identity = 59/150 (39.33%), Postives = 79/150 (52.67%), Query Frame = 0 

Query: 3   ASSFVADLFDVKEP-PLSSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGG 62
           +SSF A+LF  K+P P SS+SG+F+ +FP P K                        G  
Sbjct: 14  SSSFTAELFGSKDPSPPSSSSGIFSTMFPHPSK------------------------GSA 73

Query: 63  RNPSSSGDWLKQTNGNQPHHTRQGNS-GGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSP 122
           R+ S+S       +G+Q       N+    +EPCHLSSSLYYGGQD Y+++ +    P P
Sbjct: 74  RDGSNS------KHGSQAQRRESLNAQEDRVEPCHLSSSLYYGGQDVYARSTTNQTYP-P 132

Query: 123 PPTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
               ++  GEDD NG N Q  SRGNWWQG+
Sbjct: 134 VKNDRRRSGEDDANGQNPQDVSRGNWWQGS 132

[Close]
BLAST of Lsi02G013270 vs. TAIR 10
Match: AT5G02020.1 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-15
Identity = 59/149 (39.60%), Postives = 77/149 (51.68%), Query Frame = 0 

Query: 3   ASSFVADLFDVKEPPLS-SASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGG 62
           +SS  ++LF  +E P S S+SG+  +IFP P KV+        T T GC+  +  + GG 
Sbjct: 16  SSSLTSELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETVTGGCWNEKTSKTGGN 75

Query: 63  RNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSPP 122
                    + +    Q +H         ++PCHLSSS+YYGG D Y Q P    S S  
Sbjct: 76  ---------VDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQ-PQNSTSNS-- 135

Query: 123 PTMKKSGGEDDPNGNNSQPASRGNWWQGT 151
            T KK GGEDD     S  ASRGNWWQG+
Sbjct: 136 -TNKKDGGEDD-----SGSASRGNWWQGS 146

[Close]
BLAST of Lsi02G013270 vs. TAIR 10
Match: AT2G39855.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = 0 

Query: 19  SSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGGRNPSSSGDWLKQTNGNQ 78
           SS +G+F +IFP P  V       +LT  +G    +         P+  G+  K    N+
Sbjct: 32  SSTTGLFKSIFPPPSAV----TQGNLTSRNGAAKYQPTNF---ETPNERGERSK----NK 91

Query: 79  PHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSPPPTMKKSGGEDDPNGNNS 138
              + Q  S  +  PC+LSSS+YYGGQD YS       S + P   KK G E D     S
Sbjct: 92  ERKSYQ--SEETQPPCNLSSSIYYGGQDNYSS------STTNPDAYKKDGEEGD-----S 141

Query: 139 QPASRGNWWQGTNN 153
           + ASRGNWW+G+ N
Sbjct: 152 ESASRGNWWEGSFN 141

[Close]
BLAST of Lsi02G013270 vs. TAIR 10
Match: AT5G02020.2 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 0 

Query: 3   ASSFVADLFDVKEPPLS-SASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGG 62
           +SS  ++LF  +E P S S+SG+  +IFP P KV+        T T GC+  +  + GG 
Sbjct: 16  SSSLTSELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETVTGGCWNEKTSKTGGN 75

Query: 63  RNPSSSGDWLKQTNGNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQ 111
                    + +    Q +H         ++PCHLSSS+YYGG D Y Q
Sbjct: 76  ---------VDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQ 115

[Close]
BLAST of Lsi02G013270 vs. TAIR 10
Match: AT3G55646.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 0 

Query: 19  SSASGVFAAIFPSPQKVMLLFLNCSLTHTSGCYVLRIRRMGGG---RNPSSSGDWLKQTN 78
           SSA+G+F +IFP P    L           G  V      GG    ++P++ G+      
Sbjct: 37  SSATGLFKSIFPPPSADQL-----------GRQV-DFASQGGHVKYQSPNAKGE-----R 96

Query: 79  GNQPHHTRQGNSGGSLEPCHLSSSLYYGGQDGYSQAPSAGPSPSPPPTMKKSGGEDDPNG 138
            N+       N   +  PCHLSSSLYYGGQ+ YS       + +   T KK G E D   
Sbjct: 97  SNKKEKKSYYNE-ETEPPCHLSSSLYYGGQETYSST-----TTTTHDTYKKDGEEGD--- 143

Query: 139 NNSQPASRGNWWQGT 151
             S+ ASRGNWW+G+
Sbjct: 157 --SKRASRGNWWEGS 143

The following BLAST results are available for this feature:
BLAST of Lsi02G013270 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi02G013270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I4B79.4e-5476.00uncharacterized protein LOC111469517 OS=Cucurbita maxima OX=3661 GN=LOC111469517... [more]
A0A6J1HJ441.4e-5275.33uncharacterized protein LOC111464929 OS=Cucurbita moschata OX=3662 GN=LOC1114649... [more]
A0A5D3BEB73.0e-5275.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C5M63.0e-5275.82uncharacterized protein LOC103497123 OS=Cucumis melo OX=3656 GN=LOC103497123 PE=... [more]
A0A0A0LXG93.3e-5175.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525300 PE=4 SV=1[more]
BLAST of Lsi02G013270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583402.11.5e-5361.73hypothetical protein SDJN03_19334, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022970583.11.9e-5376.00uncharacterized protein LOC111469517 [Cucurbita maxima] >XP_023519303.1 uncharac... [more]
XP_038894691.13.3e-5378.00uncharacterized protein LOC120083160 [Benincasa hispida] >XP_038894692.1 unchara... [more]
XP_022964980.12.8e-5275.33uncharacterized protein LOC111464929 [Cucurbita moschata] >XP_022964981.1 unchar... [more]
XP_008457434.16.2e-5275.82PREDICTED: uncharacterized protein LOC103497123 [Cucumis melo] >KAA0031766.1 unc... [more]
BLAST of Lsi02G013270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59080.13.4e-1639.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G02020.12.9e-1539.60Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric... [more]
AT2G39855.23.1e-0936.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G02020.22.0e-0834.86Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric... [more]
AT3G55646.12.5e-0635.56unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..148
NoneNo IPR availablePANTHERPTHR33738EMB|CAB82975.1coord: 3..150
NoneNo IPR availablePANTHERPTHR33738:SF8EMB|CAB82975.1coord: 3..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G013270.1Lsi02G013270.1mRNA