Lsi02G013240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Copper transporter
Location	chr02: 17708105 .. 17708584 (+)
RNA-Seq Expression	Lsi02G013240
Synteny	Lsi02G013240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGCCGCCGAAGCTCACCACCACCATATGCACGGTATGGCACCACCGCCGGACTCCTCCACCGCATCGCCGGAGATGATGCACCACAAGATGATGATGCACATGACCTTCTTTTGGGGAACCAACGCCGAGATTTTGTTCCATCGCTGGCCTGGCGAGCGCTCCGGCATGTATGCCTTGGCCTTAATCTTCGTCTTCGTGCTTGCTTTCATCGTCGAGTGGCTTACGCACTGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTGATGCATACGGTTAGGGTTGGATTAGCGTATTTAGTGATGCTTGCGGTGATGTCGTTCAATGTTGGAGTGCTTTTGGTTGCAATCGGCGGCCATTGCTTCGGATTCTTCTTGTTTGGGAGTAGATTTTTCAAGAGATCGGAAGCGGCTTCTGGTAAATCCTCTGATCTTCCTCCTCTTAGTTGTTGA

mRNA sequence

ATGGACGCCGCCGCCGAAGCTCACCACCACCATATGCACGGTATGGCACCACCGCCGGACTCCTCCACCGCATCGCCGGAGATGATGCACCACAAGATGATGATGCACATGACCTTCTTTTGGGGAACCAACGCCGAGATTTTGTTCCATCGCTGGCCTGGCGAGCGCTCCGGCATGTATGCCTTGGCCTTAATCTTCGTCTTCGTGCTTGCTTTCATCGTCGAGTGGCTTACGCACTGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTGATGCATACGGTTAGGGTTGGATTAGCGTATTTAGTGATGCTTGCGGTGATGTCGTTCAATGTTGGAGTGCTTTTGGTTGCAATCGGCGGCCATTGCTTCGGATTCTTCTTGTTTGGGAGTAGATTTTTCAAGAGATCGGAAGCGGCTTCTGGTAAATCCTCTGATCTTCCTCCTCTTAGTTGTTGA

Coding sequence (CDS)

ATGGACGCCGCCGCCGAAGCTCACCACCACCATATGCACGGTATGGCACCACCGCCGGACTCCTCCACCGCATCGCCGGAGATGATGCACCACAAGATGATGATGCACATGACCTTCTTTTGGGGAACCAACGCCGAGATTTTGTTCCATCGCTGGCCTGGCGAGCGCTCCGGCATGTATGCCTTGGCCTTAATCTTCGTCTTCGTGCTTGCTTTCATCGTCGAGTGGCTTACGCACTGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTGATGCATACGGTTAGGGTTGGATTAGCGTATTTAGTGATGCTTGCGGTGATGTCGTTCAATGTTGGAGTGCTTTTGGTTGCAATCGGCGGCCATTGCTTCGGATTCTTCTTGTTTGGGAGTAGATTTTTCAAGAGATCGGAAGCGGCTTCTGGTAAATCCTCTGATCTTCCTCCTCTTAGTTGTTGA

Protein sequence

MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCFGFFLFGSRFFKRSEAASGKSSDLPPLSC

Homology

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BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-40
Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 9   HHHMHGMAPPPDSSTASPEMM-------------HHKMMMHMTFFWGTNAEILFHRWPGE 68
           H HMHGM  P  SS++SP  M             H KMMMHMTFFWG N E+LF  WPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  RSGMYALALIFVFVLAFIVEWLTHCRLIK---EDSSAAAAGLIRTLMHTVRVGLAYLVML 128
            SGMYAL LIFVF LA + EWL H  L++    DS+  AAGLI+T ++T+R+GLAYLVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 AVMSFNVGVLLVAIGGHCFGFFLFGSRFFKRSEAASGKSSDLPPLSC 160
           AVMSFN GV LVA+ GH  GF LFGS+ F R+ +   K++ +PP  C
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTF-RNTSDDRKTNYVPPSGC 168

[Close]

BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-37
Identity = 84/152 (55.26%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 9   HHHMHGMAPP-PDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFV 68
           H HMH M PP P SS+ S     H MMMHMTFFWG N E+LF  WPG  SGMYAL LI +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAFIVEWLTHCRLIK-EDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAI 128
           F+LA I EWL H  +++   S+  AAGL +T ++T++ GL+YLVMLAVMSFN GV +VAI
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHCFGFFLFGSRFFKRSEAASGKSSDLPPLS 159
            G+  GFFLFGS  FK+       +  LPP S
Sbjct: 123 AGYGVGFFLFGSTTFKKPSDDQKTAELLPPSS 154

[Close]

BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-31
Identity = 72/131 (54.96%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 13  HGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAF 72
           HG  PP   S+       + +MMHMTFFWG N EILF  WPG   GMY L LI VF+LA 
Sbjct: 3   HGNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAV 62

Query: 73  IVEWLTHCRLIK-EDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCF 132
           IVEWL H  +++   S++ A GL++T ++T++ GLAYLVMLAVMSFN GV +VAI G   
Sbjct: 63  IVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAV 122

Query: 133 GFFLFGSRFFK 143
           GF LFGS  FK
Sbjct: 123 GFMLFGSTAFK 133

[Close]

BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot
Match: Q94EE4 (Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-28
Identity = 74/134 (55.22%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 10  HHMHGMAPPPDSSTASPEMMHHKMM--MHMTFFWGTNAEILFHRWPGERSGMYALALIFV 69
           H M GM+PP   + A   M   K M   HMTFFWG N+E+LF  WPG R GMYALALIFV
Sbjct: 6   HDMGGMSPPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFV 65

Query: 70  FVLAFIVEWL-----THCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVL 129
           F LA IVE+L       C       + AA GL R  +HTVRVG+AYL+MLA+MSFN GV 
Sbjct: 66  FALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGGVF 125

Query: 130 LVAIGGHCFGFFLF 137
           LVA+ GH  GF  F
Sbjct: 126 LVAVAGHAAGFLAF 139

[Close]

BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 21  SSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAFIVEWLTHC 80
           ++T   +  H   ++H TF+WG N ++LF  WPG   GMYALALIFVF LAF+ EWL  C
Sbjct: 16  TTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARC 75

Query: 81  ---RLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCFGFFLFG 140
                IK+ +   A    RT M+TV+ G +YLV+LAV+SFN GV L AI GH  GF +F 
Sbjct: 76  SDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFR 135

Query: 141 SRFFKRSE 146
            R F+  +
Sbjct: 136 GRAFRNRD 143

[Close]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL
Match: A0A5A7SLZ1 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001730 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.0e-80
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAAAEAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAASGKSSDLPPLSC 160
           VLLVAIGGHC GFFLFGSRFFKRSEA SGKSSDLPPLSC
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVSGKSSDLPPLSC 159

[Close]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL
Match: A0A1S3C5M2 (Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497118 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.1e-73
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAAAEAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           VLLVAIGGHC GFFLFGSRFFKRSEA S
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVS 148

[Close]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL
Match: A0A0A0LVF3 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526830 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.3e-73
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAA EAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           VLLVAIGGHC GFFLFGS+FFKRSEA S
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEAVS 148

[Close]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL
Match: A0A6J1KFM2 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493432 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.4e-62
Identity = 125/148 (84.46%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           M+A  E HHHHMHGMAPPP SS ASP M  H  MMHMTFFWGTNAEILF  WPG+RSGMY
Sbjct: 1   MNATDETHHHHMHGMAPPPASSAASPGMTMHHRMMHMTFFWGTNAEILFRNWPGDRSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALI +FVLAFIVEWL+H RLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           V LVAIGGHC GFF FGSRFFK S AAS
Sbjct: 121 VFLVAIGGHCLGFFFFGSRFFKNSGAAS 148

[Close]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL
Match: A0A6J1HK81 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111464864 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.1e-60
Identity = 124/152 (81.58%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAA  A+HHHMHGMAPP DSSTASPEM H  MM+HMTFFWG NAEILF+RWPGER GMY
Sbjct: 1   MDAADNAYHHHMHGMAPPKDSSTASPEMTHGTMMLHMTFFWGDNAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALIFVFVLA IVEWL+H RLIKEDSSAAAA LIRTL+H VRVGL YLVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLALIVEWLSHSRLIKEDSSAAAARLIRTLLHRVRVGLVYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAASGKSS 153
           V LVAIGGHC GF LFGSR FK+S  AS  +S
Sbjct: 121 VFLVAIGGHCLGFLLFGSRLFKKSAVASESAS 152

[Close]

BLAST of Lsi02G013240 vs. NCBI nr
Match: KAA0031770.1 (copper transporter 1 [Cucumis melo var. makuwa] >TYJ97362.1 copper transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAAAEAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAASGKSSDLPPLSC 160
           VLLVAIGGHC GFFLFGSRFFKRSEA SGKSSDLPPLSC
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVSGKSSDLPPLSC 159

[Close]

BLAST of Lsi02G013240 vs. NCBI nr
Match: XP_008457427.1 (PREDICTED: copper transporter 1 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAAAEAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           VLLVAIGGHC GFFLFGSRFFKRSEA S
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVS 148

[Close]

BLAST of Lsi02G013240 vs. NCBI nr
Match: KAE8653274.1 (hypothetical protein Csa_023259 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-72
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAA EAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           VLLVAIGGHC GFFLFGS+FFKRSEA S
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEAVS 148

[Close]

BLAST of Lsi02G013240 vs. NCBI nr
Match: XP_004145275.1 (copper transporter 1 [Cucumis sativus] >XP_031741185.1 copper transporter 1-like [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-72
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAA EAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEAAS 149
           VLLVAIGGHC GFFLFGS+FFKRSEA S
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEAVS 148

[Close]

BLAST of Lsi02G013240 vs. NCBI nr
Match: KGN66186.2 (hypothetical protein Csa_019561 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 5.6e-72
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MDAAAEAHHHHMHGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60
           MDAA EAH+HHMHGM PPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWLTHCRLIKEDSS AAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VLLVAIGGHCFGFFLFGSRFFKRSEA 147
           VLLVAIGGHC GFFLFGS+FFKRSEA
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEA 146

[Close]

BLAST of Lsi02G013240 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-41
Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 9   HHHMHGMAPPPDSSTASPEMM-------------HHKMMMHMTFFWGTNAEILFHRWPGE 68
           H HMHGM  P  SS++SP  M             H KMMMHMTFFWG N E+LF  WPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  RSGMYALALIFVFVLAFIVEWLTHCRLIK---EDSSAAAAGLIRTLMHTVRVGLAYLVML 128
            SGMYAL LIFVF LA + EWL H  L++    DS+  AAGLI+T ++T+R+GLAYLVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 AVMSFNVGVLLVAIGGHCFGFFLFGSRFFKRSEAASGKSSDLPPLSC 160
           AVMSFN GV LVA+ GH  GF LFGS+ F R+ +   K++ +PP  C
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTF-RNTSDDRKTNYVPPSGC 168

[Close]

BLAST of Lsi02G013240 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-38
Identity = 84/152 (55.26%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 9   HHHMHGMAPP-PDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFV 68
           H HMH M PP P SS+ S     H MMMHMTFFWG N E+LF  WPG  SGMYAL LI +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAFIVEWLTHCRLIK-EDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAI 128
           F+LA I EWL H  +++   S+  AAGL +T ++T++ GL+YLVMLAVMSFN GV +VAI
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHCFGFFLFGSRFFKRSEAASGKSSDLPPLS 159
            G+  GFFLFGS  FK+       +  LPP S
Sbjct: 123 AGYGVGFFLFGSTTFKKPSDDQKTAELLPPSS 154

[Close]

BLAST of Lsi02G013240 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-32
Identity = 72/131 (54.96%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 13  HGMAPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAF 72
           HG  PP   S+       + +MMHMTFFWG N EILF  WPG   GMY L LI VF+LA 
Sbjct: 3   HGNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAV 62

Query: 73  IVEWLTHCRLIK-EDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCF 132
           IVEWL H  +++   S++ A GL++T ++T++ GLAYLVMLAVMSFN GV +VAI G   
Sbjct: 63  IVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAV 122

Query: 133 GFFLFGSRFFK 143
           GF LFGS  FK
Sbjct: 123 GFMLFGSTAFK 133

[Close]

BLAST of Lsi02G013240 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 21  SSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAFIVEWLTHC 80
           ++T   +  H   ++H TF+WG N ++LF  WPG   GMYALALIFVF LAF+ EWL  C
Sbjct: 16  TTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARC 75

Query: 81  ---RLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCFGFFLFG 140
                IK+ +   A    RT M+TV+ G +YLV+LAV+SFN GV L AI GH  GF +F 
Sbjct: 76  SDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFR 135

Query: 141 SRFFKRSE 146
            R F+  +
Sbjct: 136 GRAFRNRD 143

[Close]

BLAST of Lsi02G013240 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-25
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 16  APPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALALIFVFVLAFIVE 75
           AP P  S+       H  MMHMTFFWG   E+LF  WPG    MY + L  +FV++   E
Sbjct: 11  APAPSPSSFFQHRHRHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSE 70

Query: 76  WLTHCRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCFGFFL 135
            L+ C  +K   ++   GL++T ++TVR  L+YLVMLAVMSFN GV + A+ G   GF +
Sbjct: 71  CLSRCGFMKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMI 130

Query: 136 FGSRFFKRSEAAS 149
           FGSR F+ + + S
Sbjct: 131 FGSRAFRATSSNS 143

The following BLAST results are available for this feature:

BLAST of Lsi02G013240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39065	1.5e-40	55.09	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q9STG2	4.7e-37	55.26	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q8GWP3	8.5e-31	54.96	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q94EE4	5.2e-28	55.22	Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1	[more]
Q8SAA5	1.4e-25	47.66	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]

BLAST of Lsi02G013240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLZ1	6.0e-80	94.97	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G0...	[more]
A0A1S3C5M2	7.1e-73	94.59	Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497118 PE=3 SV=1	[more]
A0A0A0LVF3	9.3e-73	93.92	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526830 PE=3 SV=1	[more]
A0A6J1KFM2	7.4e-62	84.46	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493432 PE=3 SV=1	[more]
A0A6J1HK81	1.1e-60	81.58	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111464864 PE=3 SV=1	[more]

BLAST of Lsi02G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031770.1	1.2e-79	94.97	copper transporter 1 [Cucumis melo var. makuwa] >TYJ97362.1 copper transporter 1...	[more]
XP_008457427.1	1.5e-72	94.59	PREDICTED: copper transporter 1 [Cucumis melo]	[more]
KAE8653274.1	1.9e-72	93.92	hypothetical protein Csa_023259 [Cucumis sativus]	[more]
XP_004145275.1	1.9e-72	93.92	copper transporter 1 [Cucumis sativus] >XP_031741185.1 copper transporter 1-like...	[more]
KGN66186.2	5.6e-72	94.52	hypothetical protein Csa_019561 [Cucumis sativus]	[more]

BLAST of Lsi02G013240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59030.1	1.1e-41	55.09	copper transporter 1	[more]
AT3G46900.1	3.3e-38	55.26	copper transporter 2	[more]
AT2G26975.1	6.0e-32	54.96	Ctr copper transporter family	[more]
AT2G37925.1	1.0e-26	47.66	copper transporter 4	[more]
AT5G59040.1	3.2e-25	44.36	copper transporter 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 94..136 e-value: 5.3E-10 score: 40.0 coord: 37..81 e-value: 1.2E-8 score: 35.6
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 8..158
None	No IPR available	PANTHER	PTHR12483:SF80	COPPER TRANSPORTER 6-LIKE	coord: 8..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013240.1	Lsi02G013240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030242	autophagy of peroxisome
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0035434	copper ion transmembrane transport
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0016236	macroautophagy
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006623	protein targeting to vacuole
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005770	late endosome
cellular_component	GO:0071561	nucleus-vacuole junction
cellular_component	GO:0034271	phosphatidylinositol 3-kinase complex, class III, type I
cellular_component	GO:0034272	phosphatidylinositol 3-kinase complex, class III, type II
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity
molecular_function	GO:0004674	protein serine/threonine kinase activity