Lsi02G013170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013170
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	mitochondrial import inner membrane translocase subunit TIM10
Location	chr02: 17611273 .. 17616526 (+)
RNA-Seq Expression	Lsi02G013170
Synteny	Lsi02G013170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGATTATTTTTTCTTTTTTTCACTCCTTAACGTTGAGAATTGTACGACTCGAGAACCCTACAAATAAGTATACCTTTAAACCTAAAATCAAAAAGTATCAACTTGGTAAAATTCTTGGCATCGCATCGTCCCAGGGATTTAGCAGCGGGGTTTTGCCTCCTTCATCTACTACTGATCAGATTCATCAAACCCACCAAAACCCAGAGCTTCGATCTTGAAAATTTGAATTCACATTTCATTTGAAGTGAGTTTGTACAAATTGTCTTCTCGGTTTGTTCTAAATAAATTGTTCCTTTTTGGTGGGTACTCGAGTTTTGGGATTGTGATTTTGTTTGATTCAGAGTCTCAATGGCTTCTCCGAACAATATGCCATCGGCTGTGGACAAGGAACAGGTTAGTTTCTATTTATTTATTCAGTTTTTTCTTCCGTTTTTGCAAATTCATAGCCGTGATTTGGAATTCTAGTACTTGGATTGAGTACATTGAGAGTGTCTCAGATCATGAGTCGAATCTGTGTGTTTTATTTTGGTGGGTTTCTCCAAATTGGACAAATGTAATTGTTAGGGCACGTAGGAGAGATATAGAGGATAGTTATAGGAAAAAATTTCATTAATTGAACGAAAGCTAAGCAGCTGGTTTTCAAGCTTTAATATATTTTGTTATTGAACTCTGTCCATTTGGAGTGATGAATATGTTCAATTTATTAGCATTTGATGATTCTTTATCATGTTGATATAACTTAAATGTAGATAATAAATTCATAGTTATCAGCACAAACTTATTTCGATGTTTTTGCATTTGAGCAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTGTTCAACAAGTATGTTTTACTACATTTTCTTTTTATTTCACCTTTTTAATAAAAGCATTTGTAAAATGTGATATACATAGATATTGCCTTGATCCCTTTGTCTGTTCGGGTCAGTCCATTGATATGCTCATTGGGCTCGTCGTTAGGAAGAGGTGGGCTGACAAGGAGAGGAATCATTCCCATCGGTGAAATGAATCATTTCTCCCAGATCTTCTTTGTAGTCCAACTTGGTATATATATGAATTCATGTTGCCAGTCTCAGTTGGAGGAATAGTGTGACTTGGCAGCTTTCTTTTTTTTTTTTTTTTTTTTGTTAGTGAAACTAGAGCCAAAGGGAATGGATGTAGCTGTTTCATTGAAAGAAGATTTTATATGTGTTGTTTAATTGAGATATCTGAGCTTCATGTTTCTACCTTCTTCATAGACTCTGACCTTATGCCTTTGTCTCTTTGTCTTTCAGGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGTAGGAGAGTTGTCTTACATATCCATCTTTGAATGTTGCATGCTTTCTAATCATAGAATTCAATTTCTTAAGGCTGTAGTTTTTGGCATTATAAGATTGATTCTATCTCATTCATTTAGAGATTTATGCATGGTCTTTTGTCATTTAACAACTGCCATCTATTTTAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGTTGTATTGACCGCTGCGTGTCCANGCTTTTTTTTTTTTTTTTTTTTTTTTGTTAGTGAAACTAGAGCCAAAGGGAATGGATGTAGCTGTTTCATTGAAAGAAGATTTTATATGTGTTGTTTAATTGAGATATCTGAGCTTCATGTTTCTACCTTCTTCATAGACTCTGACCTTATGCCTTTGTCTCTTTGTCTTTCAGGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGTAGGAGAGTTGTCTTACATATCCATCTTTGAATGTTGCATGCTTTCTAATCATAGAATTCAATTTCTTAAGGCTGTAGTTTTTGGCATTATAAGATTGATTCTATCTCATTCATTTAGAGATTTATGCATGGTCTTTTGTCATTTAACAACTGCCATCTATTTTAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGTTGTATTGACCGCTGCGTGTCCAAGTATTGGCATGTAAGCTGATTTCTATCTTCTATGCGCTGTTTTTTAGTTTATGAGATATGTGATAATCATTTAGTACACAGCACTTTATTCCCCATCGTGATTGAATGTACAGAGACAAATTCATTTAGCTCTTCTTAATCACTCTGTCCTTATTCAAATATCACAATATCATGTTTAAATAAAATCTTTGTAGTGCTTGGAATGAAATTTAAATGAATCCATGTGTTTTTGTTGTTTTACAATCTACAAATCAATACTTGTTATGAATATGGTAAAATCAATCATATTTCACTTTGAGGCATGGATGCACATTTGATAAATGAAACCAGGTGTCTTCTGATAAAACAAAACCCATTGGTAAATTACTCTTGTTATAACCTTGAATTTTCTTTTTGAGTTCAACAGTCATGTAGGTTGAGGGATTCAAACCTCTAACTTCTTGGTCAAGAGTTATGTCTAAACCAGTCGAGTTATATTCAGGTTGACACGAGCCTAGATTTTCTCCAAAGAATTGAAACACTTCACCTTGCATTCCAAATTAAAGAAATTTCATACACTCAATGTTGAAACACTAGCATTGATCAGTTGGCTTGCATATTATTGTGAATTGACTCTTCATGATGTGAGAGTACTAATAGGAGAAGGATATTAGTAAGGGTTTAATGGTAATTAACTAAGGATGAATTGTGTATAAATAGAGGGAGTTTGGGATCTTAGAGTGGAGGGAATTATTTTGGAGATTGACCAGTGTTGGACTTCGGGAGAGATATAACTCTCTCGAAAGGCTATTGAGTATTGATGTTGTAATTTTTCTTTTGATATTGAAATATTGTTCTATTTTGTGTTTCGTGTTATTGGGATTCAAAGACATGATTAAGGTGCATACATAGTCTATGGGACTATTTATTGGCCACAGTTTCTCCTATAACTTAAGAATGTTTCCTTCGACATAATTTTAAATTCATTCCTCCCCAGTTTGAAAGAAAATCGCTTCTTCGATGAGCTTGTTTACGATAAAACAATGTATTTGCTTGAACCTGCATCATCCATTGTTGTTGACTGCTTGAATTCATCCTAATGGTATTTAGTTTAGGGTATTGATTATTAGTTTGCTGTGCTTCAGGTAACCAATTTAATCGGCCAGCTACTCGGGTCTGGCAGACCTCCAATGTGAGTTGATTTCTGATCTGAATGATTGTTGGTGATTTGGGAATGAAGAGCTCTGATTTATGCATTTTTGGTCTGATTAAATTCTCCATCTCATGAAATAACTTAAGTCTTTCTGTTCGAGAAAGCTTTGATAATGGCACATTCTAGTCAATTTTATAGTTTTCATTTCACCATTAACTATGATTTTTAATTTTCTAGAAAATGATTGGGTCTTTATACCCTTTTTCTCATTGCTGAAGATCATACTGGCTAGCTATACATTGCCACATAAGTATCTTTCTTGCCAATTCTTCAATTTTAGTGTTTGAAGAGGAAGGTTAAATAAAGTCTTATAGTACTTTGCCTCTTAAATCGGTGTTTGGACTTCCATTTTGCATAAATTTATTTTGCCAGTATTTTCTTAAATTTAACCATTTTAGTTCTCGAGTTTTTTAAAAGGTTTAAAATGTTCATGAGTGATTTTTTTTATTATTATTATTATCTAAGTTAAAAATAGTAATTAAAATAGTTATCTTTTATCTCTCTCCTCCACCACCCTCCTTCGGTCCACTTTTTCAATTATCATATTTAAATCTAAAATGTCATTCATCATTTAAAATAATAATAATAAACTACTCATGAACTTCTTGAACCTGTTTTGAAAAACTCGGGGACTGAAAGGATGCATTTTAAAATTTTAGGGATCAAATGCTTCTATTATTCTACACTGTAGGACTAAAAATATATATACACACATGTAAATGTATTGACTAAGTTAGCTTCAGTCAGCGATTGCATGTTCAACATTTTTTCCATTTTTTCTCTCTTATCCCCTTTCCCTCTCGTTTTTGCTCATTCTTTTTCCCTCTTGTGGTGTGCTTGTGTATCCTCTTTTTTCCCTTTGCTTGTTGTTTTCTTGTTCTTGCTCGTGTTCTTATTTTATTTGAGCCATTTTCTTAGGTTAGCAAGTCAAATTATTCCATTTATGCGATCACTATTGAGTATTGAGTGAGAGATTAAATCTCCAACCTCTAGAGACAAAGCGTATGTCAATACTAATTAATCAAGTTCACTTTAGCTTTTAGCTATTAGCCATTTGTTAAGATTGAATTTAAGTAGTTAGGATTGAATTCAAGTACTTTTGGTATGTTTATTAAAAATACATGGATTTTGATGAAACAAATGAAATTACATTACCAATACATTTAAAAGGGTGACATAATTAAGTATAAGTATAGAAATGGTAATTATAATCAATCTAAAGTATTGACAGATGCCAAATAATAATAATTAGGAAGGTATCAATTTTGAAAGTCGTAGACTTCGAATACTTTTAATTAGATTTTAATCTCTAAAAATTATCTGTTAAATTTTTAAACATTGAAATTTATATTGTTCCAAATTTTAGAAAATAAAAATATAATAAATAATAAAAAAAAAGTTTGAATGGAGTTAATATGGTAGAGTTGTTTAATTTTAGTAGAATTGTTTAATTTAAGTTAGGTCGTTTGTGATTGGGTGCAGGACTGTTAATTATTGTGCTCGTTTCATACATAAAATTACGTAACATCTTATATTAGTTTTTTTGTTACTAATTATGGAATTTCACTTTTTTTTCCCTGTAAATTCACATGTATTGGGTCAATAAAATAGAAAATTAATGTTTTTTTTAAGATGCCATATGATTTCTTTTTATATTAAAGAAACTTAATTATGAGTATTGAGAAAAAAAATGTTTTTAAAATACAAAAAAAAAAAAAAAAAAAAAAATTCTGGGTTTAGTTGCATTATCTTAAAAAAAAAAAGCTCGCACGAGGTGATTGACAATGAACGCTATTGAAAAGTTGAGTTATTTAACACTGAATACATTCATATTGTAATTTTATATATATTTGGGATTAAATTTGGAAAGGAGAATTAATTTGTTAACATGTTCAAATTCAGTGTTCAGCCGGAAACATCAACGGACTTTACATCCGTTTTCGTTTTTTCCGCCTTCGGCACCGTCACGGTTAAAACTCCGTTCTCCATTGATGCCCTAATTTCCTCCATTTTCGCATCCTCCGGCATCCTGAATCTCCTCTGA

mRNA sequence

TTCGATTATTTTTTCTTTTTTTCACTCCTTAACGTTGAGAATTGTACGACTCGAGAACCCTACAAATAAGTATACCTTTAAACCTAAAATCAAAAAGTATCAACTTGGTAAAATTCTTGGCATCGCATCGTCCCAGGGATTTAGCAGCGGGGTTTTGCCTCCTTCATCTACTACTGATCAGATTCATCAAACCCACCAAAACCCAGAGCTTCGATCTTGAAAATTTGAATTCACATTTCATTTGAAAGTCTCAATGGCTTCTCCGAACAATATGCCATCGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTGTTCAACAAGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGTTGTATTGACCGCTGCGTGTCCAAGTATTGGCATGTAACCAATTTAATCGGCCAGCTACTCGGGTCTGGCAGACCTCCAATTGTTCAGCCGGAAACATCAACGGACTTTACATCCGTTTTCGTTTTTTCCGCCTTCGGCACCGTCACGGTTAAAACTCCGTTCTCCATTGATGCCCTAATTTCCTCCATTTTCGCATCCTCCGGCATCCTGAATCTCCTCTGA

Coding sequence (CDS)

ATGGCTTCTCCGAACAATATGCCATCGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTGTTCAACAAGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGCTTACACAATCATGTTTTAACAAATGTGTTGATAAGAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGTTGTATTGACCGCTGCGTGTCCAAGTATTGGCATGTAACCAATTTAATCGGCCAGCTACTCGGGTCTGGCAGACCTCCAATTGTTCAGCCGGAAACATCAACGGACTTTACATCCGTTTTCGTTTTTTCCGCCTTCGGCACCGTCACGGTTAAAACTCCGTTCTCCATTGATGCCCTAATTTCCTCCATTTTCGCATCCTCCGGCATCCTGAATCTCCTCTGA

Protein sequence

MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPIVQPETSTDFTSVFVFSAFGTVTVKTPFSIDALISSIFASSGILNLL

Homology

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BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot
Match: Q9ZW33 (Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana OX=3702 GN=TIM10 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNK             L Q+CFNKCVDKRY
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNK-------------LAQTCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61 KEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot
Match: Q9W2D6 (Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster OX=7227 GN=Tim10 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 9  SAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRYKESELNMG 68
          S  D+ ++  M E E+E   +L+N             R+T +C  KC+  RY ESEL  G
Sbjct: 7  STADQAKLQLMQEMEIEMMSDLYN-------------RMTNACHKKCIPPRYSESELGKG 66

Query: 69 ENSCIDRCVSKYWHVTNLIGQLL 92
          E  CIDRCV+KY  +   IG+ L
Sbjct: 67 EMVCIDRCVAKYLDIHEKIGKKL 76

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BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot
Match: Q4QR62 (Mitochondrial import inner membrane translocase subunit Tim10-A OS=Xenopus laevis OX=8355 GN=timm10-a PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-08
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 20 AEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRYKESELNMGENSCIDRCVSK 79
          AE E+E   +++N L           R+T +C  KCV   YKE+EL+ GE+ C+DRCVSK
Sbjct: 11 AELEVEMMADMYNSLL----------RMTGACHKKCVPPHYKEAELSKGESVCLDRCVSK 70

Query: 80 YWHVTNLIGQLL 92
          Y  +   +G+ L
Sbjct: 71 YLDIHERMGKKL 72

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BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot
Match: Q9UTE9 (Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim10 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-08
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 15 QIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRYKESELNMGENSCID 74
          Q   MAE+E+E   ++FN             RL  +C  KC+  +Y E++L  GE+ CID
Sbjct: 16 QNIAMAEQEVEMMSDIFN-------------RLVMTCHKKCISPKYYEADLTKGESVCID 75

Query: 75 RCVSKYWHVTNLIGQ 90
          RCVSKY+     + Q
Sbjct: 76 RCVSKYFEANQSLSQ 77

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BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot
Match: Q2NKR1 (Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus OX=9913 GN=TIMM10 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 20 AEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRYKESELNMGENSCIDRCVSK 79
          AE E+E   +++N             R+T +C  KCV   YKE+EL+ GE+ C+DRCVSK
Sbjct: 11 AELEVEMMADMYN-------------RMTSACHRKCVPPHYKEAELSKGESVCLDRCVSK 69

Query: 80 YWHVTNLIGQLL 92
          Y  +   +G+ L
Sbjct: 71 YLDIHERMGKKL 69

[Close]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL
Match: A0A5D3BDG9 (Mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001630 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.6e-39
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL
Match: A0A0A0LVG1 (zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527890 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.6e-39
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL
Match: A0A1S3C655 (mitochondrial import inner membrane translocase subunit TIM10 OS=Cucumis melo OX=3656 GN=LOC103497109 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.6e-39
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL
Match: A0A6J1I395 (mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita maxima OX=3661 GN=LOC111469520 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.0e-38
Identity = 81/98 (82.65%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPN+MPSA+DKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNDMPSAMDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL
Match: A0A6J1HM98 (mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita moschata OX=3662 GN=LOC111464866 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.4e-37
Identity = 80/98 (81.63%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPN+M SA+DKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. NCBI nr
Match: XP_004145269.1 (mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus] >XP_008457418.1 PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumis melo] >KGN65773.1 hypothetical protein Csa_023233 [Cucumis sativus] >TYJ97353.1 mitochondrial import inner membrane translocase subunit TIM10-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 7.4e-39
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. NCBI nr
Match: XP_038894964.1 (mitochondrial import inner membrane translocase subunit TIM10 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-38
Identity = 83/98 (84.69%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK             LT SCFNKCVDKRY
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNK-------------LTHSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. NCBI nr
Match: XP_022970585.1 (mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 8.2e-38
Identity = 81/98 (82.65%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPN+MPSA+DKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNDMPSAMDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. NCBI nr
Match: XP_022964898.1 (mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita moschata] >KAG7019162.1 Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-37
Identity = 80/98 (81.63%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASPN+M SA+DKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 1  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPP+
Sbjct: 61 KESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Lsi02G013170 vs. NCBI nr
Match: KAG6583395.1 (Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-37
Identity = 80/98 (81.63%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1   MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
           MASPN+M SA+DKEQIFGMAEKEMEYRVELFNK             LTQSCFNKCVDKRY
Sbjct: 24  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNK-------------LTQSCFNKCVDKRY 83

Query: 61  KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
           KESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPP+
Sbjct: 84  KESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 108

[Close]

BLAST of Lsi02G013170 vs. TAIR 10
Match: AT2G29530.1 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-30
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNK             L Q+CFNKCVDKRY
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNK-------------LAQTCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61 KEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Lsi02G013170 vs. TAIR 10
Match: AT2G29530.2 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-30
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRLTQSCFNKCVDKRY 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNK             L Q+CFNKCVDKRY
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNK-------------LAQTCFNKCVDKRY 60

Query: 61 KESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
          KE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61 KEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Lsi02G013170 vs. TAIR 10
Match: AT2G29530.3 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29
Identity = 65/109 (59.63%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MASPNNMPSAVDKEQIFGMAEKEMEYRVELFN----KLTQSCFNKC-------VDKRLTQ 60
           MASP  +P  V KEQ F MA+ EMEYRVELFN    KL +  F          + + L Q
Sbjct: 1   MASP--IPVGVTKEQAFSMAQTEMEYRVELFNNDIYKLEEYKFETADMSKILRLPELLAQ 60

Query: 61  SCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPI 99
           +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61  TCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 107

The following BLAST results are available for this feature:

BLAST of Lsi02G013170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW33	4.2e-29	64.29	Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis tha...	[more]
Q9W2D6	2.4e-08	38.55	Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila mela...	[more]
Q4QR62	5.4e-08	40.28	Mitochondrial import inner membrane translocase subunit Tim10-A OS=Xenopus laevi...	[more]
Q9UTE9	9.2e-08	37.33	Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharom...	[more]
Q2NKR1	1.6e-07	38.89	Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus OX=9...	[more]

BLAST of Lsi02G013170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDG9	3.6e-39	85.71	Mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucumis me...	[more]
A0A0A0LVG1	3.6e-39	85.71	zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G52789...	[more]
A0A1S3C655	3.6e-39	85.71	mitochondrial import inner membrane translocase subunit TIM10 OS=Cucumis melo OX...	[more]
A0A6J1I395	4.0e-38	82.65	mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita ...	[more]
A0A6J1HM98	3.4e-37	81.63	mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita ...	[more]

BLAST of Lsi02G013170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145269.1	7.4e-39	85.71	mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus] ...	[more]
XP_038894964.1	2.8e-38	84.69	mitochondrial import inner membrane translocase subunit TIM10 [Benincasa hispida...	[more]
XP_022970585.1	8.2e-38	82.65	mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita ma...	[more]
XP_022964898.1	6.9e-37	81.63	mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita mo...	[more]
KAG6583395.1	6.9e-37	81.63	Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbit...	[more]

BLAST of Lsi02G013170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29530.1	3.0e-30	64.29	Tim10/DDP family zinc finger protein	[more]
AT2G29530.2	3.0e-30	64.29	Tim10/DDP family zinc finger protein	[more]
AT2G29530.3	1.5e-29	59.63	Tim10/DDP family zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 19..45 e-value: 3.0E-6 score: 26.8 coord: 46..90 e-value: 3.0E-15 score: 55.6
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 47..93 e-value: 2.6E-18 score: 67.3
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 13..46 e-value: 2.4E-6 score: 29.0
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 23..45
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 46..93
None	No IPR available	PANTHER	PTHR11038:SF22	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10-LIKE	coord: 46..98 coord: 4..46
None	No IPR available	PANTHER	PTHR11038	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10	coord: 46..98 coord: 4..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013170.1	Lsi02G013170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0008270	zinc ion binding