Lsi02G013150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G013150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-CH-type domain-containing protein
Location	chr02: 17603512 .. 17606295 (+)
RNA-Seq Expression	Lsi02G013150
Synteny	Lsi02G013150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATGATCCTTAAATAATCGGATAAAGCTGCAAGTACTGTCTCTCACGCATCCCTTTCCTCTTTTGCGTCTTCATCAATAATCACTGTTCTTGTCACGCTTTTTTCTTTTAATTTTTAATTTCCTTTTCTCTTTGAATAACAGCTATCGAAACTGACACGCCGAAAAAGAGTTTCACTGTGTGTCTGTATTTGTTTGTGAGAGACGAACCTGATATTATCTTTGACAGAGAGAGAGAGAGAGAGAACCAACAAATCAACAAACAGACAAAAGCCCATAACCCCACGTTTGCCCTCTCCTCTCTTTCTCTTGATTCAAAGGTGTTTTTACTTTACCTTACCAGACACTAATCTCATGGTTAAAAGGGTATATTTTAAGAGGGCTGAGCTTTTAATTTGCTGGGTGTTATGATAATTTCATAGTCTTGATTGTGGTATGTCTTCCAAATTTTGATTTCTTGTTCTACTTGTACGTTCTGAAATCTGTATGGGAACTGTAATTGTACATGATTAGGACTTAGGAGGAAAGAGGAAGGGGAAAAATGGTTGTTACTTATAAATACCTCGAACCCTTCTTAATCTTTTCATCTTGCTGGGACCGCCATGCTTTCCTGCACTGTTTGTTAATACATATCTTTTGGTTTTTCGTCAGTCGAATGCCATTTCTCCATCTGGGTTTCACAGGATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCGGACCCTGCGAATCCGAGCTCTGTGACATTTCGCGATGCTCGTTCAGCAGCTGGGAGCTGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCTACAGCTTCGGGATCTCACGGCGAGGGCCAGTTTTCCGGCGAGATAGAGGGCGTCCCGGATGCTGAAATGGGTCATTTCATCTCGGAGAGCTCGTCAGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAGCTGGAAAGCAGAGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAATACGTAAGTAATTATTCTAATTAACTCCCATTTTCCCCCATCAGATTTCATCCCCATCAGAAACCCAATTCTTGATTTTATCTCTCCACCTTTCTTCAATATACTTTTGAATCTTTTGATCATCAATGGCCTTGCTGAAGTTTTACCTAGACTTGGTTTAGCTTGGCTCTTGCTAATAGTTTCATTGCTACCTAGGGAAACATGCCTAAATCTCCTCTGCTTCTTCTTTTAGCAACAATTCACTTGAGTCTTCTGCCGTGAATTGCCCCCAAACAGTTCCATCTTCCATCTCTATGTTGTATTCTGTAAATTCATTATGACTAAAAACTTTAAGTCCTTGGATCTTCTGCAGCCAGCATTTAGTTTTCTTCACAGTACTTGATTTTTTCTGTCCTAACTTCTAAGTTGTTCAAATTTAGCATTCATCAGTACATTATCATGTAGATAAGACAAAGAATGATATATGACATATCTGAAGGTTGGATATCTCCTTTTTCTTCTTTGTATTTAAATGTATGATGGTGTCACACTTAAATTCCTATAAATTTCCATGTGGCAAAGTTTAACTTACAAACTTGTCCGTAGCTAATCTGTTCCATCTTTTTTTTGTTTGTGATAACATAGATCAGATACGTGTTTTCTTTTTTCAGATACTTAGAATTTGGGCAGACGAATGAGTATTCTGGTTAGAAACCTTACATCAACTAGATTTTGTTTGTAAAGCTTCACTATTGAGAATGAACGTATTGTCCTTAAGTTAATGTCTTCTCATATTACAAGGCGTTCATCGGACATAAATGGGGCATTTGATCGTTTATATGAGCCTGACTGTTCTCGAACGTAGAAATATCATCGGTATATCTTGAAGGTGTTGGAGATTGTTTAACTCTTTAGTTAGGAACTTTCAATCAACCAAATTTAGATTTTTTGCTGATTGGTGTATATACCAAATTGACCCTCCCATGTGTGAGTGAAAATTTGAACCTCTAACCAATTGAATTATGCTTCGGTTGAGAATATGTCGATACCTTGTTGTTGTGAGTTATGACTATTAACTTGACAAGCAATATGATCTTTTTCTTGCAGAATTTGCGAGTTATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCACTGCGGTTGCAGCTGCTGTAGCATCCTCAGCTTTGACAGCACCCCTAACTCTCGTTGAGACTCGAACAATCTTTCACGGTCGACGTATTATGAACTTTCTACTTGCTTGCATGCTCCTTGCATTTGCAATGTCTTGGCTTTTTCACTTCAAATTAATGTCATAGACTTAGAAAGATCACCTACATCTACTGGAGGAAGAAAATTAGTTAAGAATGGAAAATTTGGGGCATTCTAAGTTCTTGAGGCAATTTGAGTTCTTCATGCCTTTGTATATATATTTACACTTCATTTTGTTTAGTTAATTATGATGAGGCTGGTTTTTTAGGCATTTCTCAGTTGTAGTGTGGTGAATGCATAGGGTTCAGTAAATATAAGTACATCTCTCTAAATCTGTGTTGCTGAAAATATTTTTTCCTGTATGAGCAACTCTACAAGGAAAAAAAAGACTGACCTGAGGGCATTTTTAAAAATAAAATATCAAGAATTATTATAAAA

mRNA sequence

TCATGATCCTTAAATAATCGGATAAAGCTGCAACTATCGAAACTGACACGCCGAAAAAGAGTTTCACTGTGTGTCTGTATTTGTTTGTGAGAGACGAACCTGATATTATCTTTGACAGAGAGAGAGAGAGAGAGAACCAACAAATCAACAAACAGACAAAAGCCCATAACCCCACGTTTGCCCTCTCCTCTCTTTCTCTTGATTCAAAGGTGTTTTTACTTTACCTTACCAGACACTAATCTCATGGTTAAAAGGGTATATTTTAAGAGGGCTGAGCTTTTAATTTGCTGGGTGTTATGATAATTTCATAGTCTTGATTGTGTCGAATGCCATTTCTCCATCTGGGTTTCACAGGATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCGGACCCTGCGAATCCGAGCTCTGTGACATTTCGCGATGCTCGTTCAGCAGCTGGGAGCTGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCTACAGCTTCGGGATCTCACGGCGAGGGCCAGTTTTCCGGCGAGATAGAGGGCGTCCCGGATGCTGAAATGGGTCATTTCATCTCGGAGAGCTCGTCAGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAGCTGGAAAGCAGAGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAATACAATTTGCGAGTTATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCACTGCGGTTGCAGCTGCTGTAGCATCCTCAGCTTTGACAGCACCCCTAACTCTCGTTGAGACTCGAACAATCTTTCACGGTCGACGTATTATGAACTTTCTACTTGCTTGCATGCTCCTTGCATTTGCAATGTCTTGGCTTTTTCACTTCAAATTAATGTCATAGACTTAGAAAGATCACCTACATCTACTGGAGGAAGAAAATTAGTTAAGAATGGAAAATTTGGGGCATTCTAAGTTCTTGAGGCAATTTGAGTTCTTCATGCCTTTGTATATATATTTACACTTCATTTTGTTTAGTTAATTATGATGAGGCTGGTTTTTTAGGCATTTCTCAGTTGTAGTGTGGTGAATGCATAGGGTTCAGTAAATATAAGTACATCTCTCTAAATCTGTGTTGCTGAAAATATTTTTTCCTGTATGAGCAACTCTACAAGGAAAAAAAAGACTGACCTGAGGGCATTTTTAAAAATAAAATATCAAGAATTATTATAAAA

Coding sequence (CDS)

ATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCGGACCCTGCGAATCCGAGCTCTGTGACATTTCGCGATGCTCGTTCAGCAGCTGGGAGCTGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCTACAGCTTCGGGATCTCACGGCGAGGGCCAGTTTTCCGGCGAGATAGAGGGCGTCCCGGATGCTGAAATGGGTCATTTCATCTCGGAGAGCTCGTCAGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATCGAAAGGGATTGCAGAATTTGTCACTTGGAGCTGGAAAGCAGAGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAATACAATTTGCGAGTTATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAATAAATGAACCGAGCACTGCGGTTGCAGCTGCTGTAGCATCCTCAGCTTTGACAGCACCCCTAACTCTCGTTGAGACTCGAACAATCTTTCACGGTCGACGTATTATGAACTTTCTACTTGCTTGCATGCTCCTTGCATTTGCAATGTCTTGGCTTTTTCACTTCAAATTAATGTCATAG

Protein sequence

MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEGQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS

Homology

[Close]

BLAST of Lsi02G013150 vs. ExPASy TrEMBL
Match: A0A0A0M0P0 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527920 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.6e-118
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVA A
Sbjct: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 277

[Close]

BLAST of Lsi02G013150 vs. ExPASy TrEMBL
Match: A0A5D3BFF6 (E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001610 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 49  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 108

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 109 QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 168

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 169 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 228

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 229 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of Lsi02G013150 vs. ExPASy TrEMBL
Match: A0A1S3C517 (uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497107 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 61  QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of Lsi02G013150 vs. ExPASy TrEMBL
Match: A0A1S3C6R6 (uncharacterized protein LOC103497107 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497107 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 49  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 108

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 109 QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 168

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 169 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 228

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 229 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of Lsi02G013150 vs. ExPASy TrEMBL
Match: A0A6J1HM49 (uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC111464834 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.6e-104
Identity = 204/233 (87.55%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAG---SCSDMSVLDDSDDQSWHSVFDSTASGSH 60
           MSAV APRGDP  A+PSS+ +RDARSAAG   S SD+SVLDDSDDQSWHSVFDSTA GSH
Sbjct: 112 MSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWGSH 171

Query: 61  GEGQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGG 120
           G+G FSGEIEGVPDAE G FIS SSSEVDLESGDLEVKVHLGKIERDCRICHLELES GG
Sbjct: 172 GDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGG 231

Query: 121 RDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPS--T 180
           RD++DTPI LGCCCRGDLGTAHK CAETWFKIKGNTICE+CGATAQNVASQQINEPS   
Sbjct: 232 RDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSNAA 291

Query: 181 AVAAAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           A AAAVASSA+TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 292 AAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 344

[Close]

BLAST of Lsi02G013150 vs. NCBI nr
Match: XP_011658411.1 (uncharacterized protein LOC101212160 isoform X2 [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVA A
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 180

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of Lsi02G013150 vs. NCBI nr
Match: XP_004145266.2 (uncharacterized protein LOC101212160 isoform X1 [Cucumis sativus] >KGN65776.1 hypothetical protein Csa_023291 [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVA A
Sbjct: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 277

[Close]

BLAST of Lsi02G013150 vs. NCBI nr
Match: XP_038895035.1 (uncharacterized protein LOC120083374 [Benincasa hispida] >XP_038895036.1 uncharacterized protein LOC120083374 [Benincasa hispida])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGDPDPANPSSV FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 1   MSAVEAPRGDPDPANPSSVLFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGVPDAEMGHFISE SSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 61  QFSGEIEGVPDAEMGHFISECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDN 120

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
            DTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 121 FDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           V SSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VPSSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of Lsi02G013150 vs. NCBI nr
Match: XP_008457415.1 (PREDICTED: uncharacterized protein LOC103497107 isoform X2 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 61  QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of Lsi02G013150 vs. NCBI nr
Match: XP_008457414.1 (PREDICTED: uncharacterized protein LOC103497107 isoform X1 [Cucumis melo] >KAA0031780.1 E3 ubiquitin-protein ligase MARCH1 [Cucumis melo var. makuwa] >TYJ97351.1 E3 ubiquitin-protein ligase MARCH1 [Cucumis melo var. makuwa])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 220/228 (96.49%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 1   MSAVEAPRGDPDPANPSSVTFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEG 60
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTA GSHGEG
Sbjct: 49  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 108

Query: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESRGGRDN 120
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 109 QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 168

Query: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQNVASQQINEPSTAVAAA 180
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICE+CGATAQNVASQQINEPS AVAAA
Sbjct: 169 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 228

Query: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 229 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of Lsi02G013150 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-34
Identity = 89/188 (47.34%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 51  STASGSHGEGQ---FSGEIEG----VPDAEMGHFISESSSEVDLESGDLEVKVHLGKIER 110
           +++SG  G+G+    SG +E     V D E     S  S E+DLE G  E  VHL + ER
Sbjct: 18  NSSSGCDGDGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSER 77

Query: 111 DCRICHLELESRGGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICELCGATAQ 170
           DCRICH+ L++      S  PI+LGC C+ DL  AHK CAETWFKIKGN ICE+CG+ A 
Sbjct: 78  DCRICHMSLDA--ANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAG 137

Query: 171 NVAS--QQINEPSTAVAAAVASSAL-TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSW 229
           NV    +  +E S   A  V +  L T+   LVE R+ + G R +NFLLACM+ AF +SW
Sbjct: 138 NVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISW 197

[Close]

BLAST of Lsi02G013150 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-32
Identity = 85/198 (42.93%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 80  ESSSEVDLESGDL---EVKVHLG------------------KIERDCRICHLELESRGGR 139
           +S S+VDLESG +   E ++H G                  K  RDCRICHL LE+    
Sbjct: 35  DSLSQVDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKKKGGRDCRICHLPLETNKEA 94

Query: 140 DNSD-----------------------------TPIQLGCCCRGDLGTAHKQCAETWFKI 199
           ++ D                              P+QLGC C+GDLG AH +CAETWFKI
Sbjct: 95  EDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKI 154

Query: 200 KGNTICELCGATAQNVASQQINEPSTAVAAAVASSALTAPLTLVETRTIFHGRRIMNFLL 228
           KGN  CE+CGA A NVA +Q N  STA   + A++  +  LT  E R I+HGR +MNFLL
Sbjct: 155 KGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQS--LTQTEPRGIWHGRPVMNFLL 214

[Close]

BLAST of Lsi02G013150 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 80/209 (38.28%), Postives = 110/209 (52.63%), Query Frame = 0


Query: 25  RSAAGSCSDMSVLDDSDDQSWHSVFDSTASGSHGEGQFSGEIEGVPDAEMGHFISESSSE 84
           RS  GS   +   D  D  S +S F ST  GS+       E EG    ++   +S SSSE
Sbjct: 18  RSLDGSDVSVYYSDGEDVMSCYSYFYSTTGGSY-------EYEGDQSRKVSSVMSPSSSE 77

Query: 85  VDLESGDLEVKVHLGKIERDCRICHLELESRGGRDNSDTPIQLGCCCRGDLGTAHKQCAE 144
           +D +             E+DCRICHL +E+ GG       I+LGC C+ DL  AH+QCAE
Sbjct: 78  IDDDDA-------TAPPEKDCRICHLGVETSGG-----GAIELGCSCKDDLAVAHRQCAE 137

Query: 145 TWFKIKGNTICELCGATAQNVASQQINEPSTAVAAAVASSALTAP-----LTLVETRTIF 204
           TWFKIKG+  CE+C + A+NV        ST     + +   TA       T+VE R  +
Sbjct: 138 TWFKIKGDKTCEICQSVARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENR--W 197

Query: 205 HGRRIMNFLLACMLLAFAMSWLFHFKLMS 229
             +R++N +LACM+  F +SW+FHF + S
Sbjct: 198 QPQRVVNLVLACMVFGFFISWIFHFHVSS 205

[Close]

BLAST of Lsi02G013150 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-25
Identity = 80/205 (39.02%), Postives = 98/205 (47.80%), Query Frame = 0


Query: 32  SDMSVLDDSD---DQSWHSVFDSTASGSHGEGQFSGEIEGVPDAEMGHFISESSSEVDLE 91
           SD+S  D S    D  +HS   S          F GE E   D      + + +    + 
Sbjct: 23  SDVSGEDSSSCDYDYDFHSAVRS----------FCGEFEIADD------LDDETDTESVA 82

Query: 92  SGDLEVKVHLGKIERDCRICHLELESRGGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFK 151
           SG +      G  E+DCRICHL LES   R     P+ LGC C+ DLG  HKQCA+TWFK
Sbjct: 83  SGSIR-----GSPEKDCRICHLGLES--SRHECGDPMVLGCSCKDDLGYVHKQCADTWFK 142

Query: 152 IKGNTICELCGATAQNVASQQINEPSTAVAAAVASSALTAPLTLVET-----RTIFHGRR 211
           IKGN  CE+C + AQN          T V   V         T+V T     R +  G R
Sbjct: 143 IKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNR 202

Query: 212 IMNFLLACMLLAFAMSWLFHFKLMS 229
            +NFLL CM+ AF +SW FHF L S
Sbjct: 203 FLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Lsi02G013150 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 102 ERDCRICHL---ELESRGGRDNSDTP--IQLGCCCRGDLGTAHKQCAETWFKIKGNTICE 161
           ER CRICH    +     G D S +P  I++GC C+ +LG AH  CAE WFK++GN++CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 162 LCGATAQNV 166
           +CG TA+NV
Sbjct: 159 ICGCTAKNV 167

The following BLAST results are available for this feature:

BLAST of Lsi02G013150 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G013150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0P0	3.6e-118	96.49	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G52792...	[more]
A0A5D3BFF6	1.8e-117	96.49	E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C517	1.8e-117	96.49	uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C6R6	1.8e-117	96.49	uncharacterized protein LOC103497107 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HM49	6.6e-104	87.55	uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]

BLAST of Lsi02G013150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658411.1	7.4e-118	96.49	uncharacterized protein LOC101212160 isoform X2 [Cucumis sativus]	[more]
XP_004145266.2	7.4e-118	96.49	uncharacterized protein LOC101212160 isoform X1 [Cucumis sativus] >KGN65776.1 hy...	[more]
XP_038895035.1	1.3e-117	96.49	uncharacterized protein LOC120083374 [Benincasa hispida] >XP_038895036.1 unchara...	[more]
XP_008457415.1	3.7e-117	96.49	PREDICTED: uncharacterized protein LOC103497107 isoform X2 [Cucumis melo]	[more]
XP_008457414.1	3.7e-117	96.49	PREDICTED: uncharacterized protein LOC103497107 isoform X1 [Cucumis melo] >KAA00...	[more]

BLAST of Lsi02G013150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	2.4e-34	47.34	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	1.0e-32	42.93	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.1e-26	38.28	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	6.0e-25	39.02	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	2.5e-15	50.72	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 104..159 e-value: 5.9E-15 score: 65.7
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 105..158 e-value: 2.7E-9 score: 37.0
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 97..165 score: 18.78487
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 95..170 e-value: 5.6E-15 score: 56.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 33..226
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 33..226
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 105..159 e-value: 6.33499E-12 score: 56.952
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013150.1	Lsi02G013150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding