Lsi02G012750 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G012750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DBD_Tnp_Mut domain-containing protein
Location	chr02: 16939530 .. 16939742 (+)
RNA-Seq Expression	Lsi02G012750
Synteny	Lsi02G012750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATAAATGATTATACTTATCCCGGAGCTAATCCAAGACATGGCCTAAACCAACCACCAATGATGATAAATGACTATGTTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGCCAATGATGATAAATGATTGTGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCGCCAATGATGATAAATGACTATAGCTAA

mRNA sequence

ATGATGATAAATGATTATACTTATCCCGGAGCTAATCCAAGACATGGCCTAAACCAACCACCAATGATGATAAATGACTATGTTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGCCAATGATGATAAATGATTGTGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCGCCAATGATGATAAATGACTATAGCTAA

Coding sequence (CDS)

ATGATGATAAATGATTATACTTATCCCGGAGCTAATCCAAGACATGGCCTAAACCAACCACCAATGATGATAAATGACTATGTTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAACCGCCAATGATGATAAATGATTGTGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCGCCAATGATGATAAATGACTATAGCTAA

Protein sequence

MMINDYTYPGANPRHGLNQPPMMINDYVDPGANPRHDPNQPPMMINDCADPGANPRHDPNQPPMMINDYS

Homology

[Close]

BLAST of Lsi02G012750 vs. ExPASy TrEMBL
Match: A0A0E0DTA0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH   +PP               + +NDY  PGANPRH+P +PP     
Sbjct: 95  VNDYPAPGANPRHNPKRPPGREMSVLGTVAATTNVEVNDYPAPGANPRHNPKRPPGREMF 154

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 155 AQGMAAATTNVEVNDYPGPGANPRHNPKRPP 185

[Close]

BLAST of Lsi02G012750 vs. ExPASy TrEMBL
Match: B8AZG7 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20405 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH   +PP               + +NDY  PGANPRH+P +PP     
Sbjct: 98  VNDYPAPGANPRHNPKRPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 157

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 158 VQGMVAATTDVEVNDYPAPGANPRHNPKRPP 188

[Close]

BLAST of Lsi02G012750 vs. ExPASy TrEMBL
Match: Q75KZ2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.10 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 97  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 156

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 157 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 187

[Close]

BLAST of Lsi02G012750 vs. ExPASy TrEMBL
Match: A0A0N7KKZ9 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 99  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 158

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 159 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 189

[Close]

BLAST of Lsi02G012750 vs. ExPASy TrEMBL
Match: B9FKV0 (Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 99  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 158

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 159 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 189

[Close]

BLAST of Lsi02G012750 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.5e-26
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPPMMINDYVDPGANPRHDPNQPPMMINDCADPGANPRHDPNQP 62
           INDY  PGANPRH  NQPPMMINDY DPGANPRHDPNQ PMMIND  DPGANPRHDPNQP
Sbjct: 37  INDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQTPMMINDYTDPGANPRHDPNQP 96

Query: 63  PMMIN 68
           PMMIN
Sbjct: 97  PMMIN 101

[Close]

BLAST of Lsi02G012750 vs. NCBI nr
Match: EEC79430.1 (hypothetical protein OsI_20405 [Oryza sativa Indica Group])

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH   +PP               + +NDY  PGANPRH+P +PP     
Sbjct: 98  VNDYPAPGANPRHNPKRPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 157

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 158 VQGMVAATTDVEVNDYPAPGANPRHNPKRPP 188

[Close]

BLAST of Lsi02G012750 vs. NCBI nr
Match: KAB8099948.1 (hypothetical protein EE612_030285, partial [Oryza sativa])

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 45  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 104

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 105 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 135

[Close]

BLAST of Lsi02G012750 vs. NCBI nr
Match: EEE64166.1 (hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g0487100 [Oryza sativa Japonica Group])

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 99  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 158

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 159 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 189

[Close]

BLAST of Lsi02G012750 vs. NCBI nr
Match: AAT01334.1 (hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical protein [Oryza sativa Japonica Group])

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 3   INDYTYPGANPRHGLNQPP---------------MMINDYVDPGANPRHDPNQPP----- 62
           +NDY  PGANPRH    PP               + +NDY  PGANPRH+P +PP     
Sbjct: 97  VNDYPAPGANPRHNPKSPPGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 156

Query: 63  ----------MMINDCADPGANPRHDPNQPP 64
                     + +ND   PGANPRH+P +PP
Sbjct: 157 VQGMVAATTDVEVNDYLAPGANPRHNPKRPP 187

The following BLAST results are available for this feature:

BLAST of Lsi02G012750 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi02G012750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0DTA0	1.9e-09	40.66	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
B8AZG7	2.5e-09	40.66	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20405 PE=4...	[more]
Q75KZ2	3.2e-09	40.66	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.1...	[more]
A0A0N7KKZ9	3.2e-09	40.66	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE...	[more]
B9FKV0	3.2e-09	40.66	Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE...	[more]

BLAST of Lsi02G012750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895781.1	3.5e-26	87.69	circumsporozoite protein-like [Benincasa hispida]	[more]
EEC79430.1	5.1e-09	40.66	hypothetical protein OsI_20405 [Oryza sativa Indica Group]	[more]
KAB8099948.1	6.6e-09	40.66	hypothetical protein EE612_030285, partial [Oryza sativa]	[more]
EEE64166.1	6.6e-09	40.66	hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g04...	[more]
AAT01334.1	6.6e-09	40.66	hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical prot...	[more]

BLAST of Lsi02G012750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G012750.1	Lsi02G012750.1	mRNA