Lsi02G012660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G012660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RAN binding protein 1
Location	chr02: 16789017 .. 16792323 (-)
RNA-Seq Expression	Lsi02G012660
Synteny	Lsi02G012660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGCCTAAGACGCTTAAGATCTGCACTAATCATCTTGGTTCGTTCTCGATTAAACCCATTATGCACATACAATTGAGTTCCTTTGAGTGCTTTAGTATACTGTTTGACTGTTGTGCTTTTGTAGTTCTTCCATCAATGATGGTTCAGGAACACGCGGGAAATGATAAATCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGCGAATTGAAAGATGAGCTTTTCTGTATCAGATTCTCATCTATTGAGAGTGAGTACAATTTTCTAATTCTTTTTCCCCAAAATTAGGTTGCTGGTTAGACTGGCTAATGGGTTCTTTGCGGCTTTTTATTTTTATTTCTTTTTCCTTTCTTTCTTTATGATAGTGGGACATTATCCATAAGATGATAGATGTTCTATAGTTTGCCATGTAGTTGTAGGCTTGTAGCCTTTTCATTATCCTTGTAGAACTTCTATATATTAGAGCTCTCTATTGTGTCCATATTGTTAATTTTGGCTCTATAAATGGCCAAGTACCAGCACAATTCTCTTCATTGATAGAATCATTCCTTTTTTGCACCCAAATGGCTTCAATGTATGTGGTATGACTTTTACAGTTTGTCACTATAAGGAACTACAGTATTAATCTACGATCATGATATGGATCTAAGTCTAATGTTTCCCTTAAACATGGTGATACTTGGTTCTATTAAAGATTCAAGCACGTAGTATAGTTCTATTTCTAACGTTTTCATTAGATTATTTTATCAATTGGACTTTTACTGTTTTTCTTCTTCTTCTTCTTTTTCTTTTTTAAAGAAATTACATATACTGATTCTTGAATGGACTATTGACAATATTCATTTTCATTTTGGCTAATACTTGGTTTTTCTTTTCCTAATAATGGAAAGTTCGTTGTCCATACATTCATCTTTTTTATTCTGCTTGGTTTCCTTAGTTCTATAATTCTGTTTCTGTGTGTGACATTATGGCAGTAGCAAAGTAGGAGATTGGCTGCACCAAAAAGACGAAGTGTTTGATTAGAGAAAGTGGGTGAAAAGGAGTAAGGAGAGTAATTTTAGTGGTGACTAGAGAAAATTTTGGTAGTGGAAAATTATGATATAGCGGTAAGGGGATGATAAAAGGAACTACCTCAATCACGTTTGAGAACTCCCCTTATTCCAGGTGAACCCCACAACAATAATAAGAATAACCCCCAATAAACAAATTGATAACAACCCCAAGAAAGCTAAAACATATTTGGCTTGGAAAGATTGATCAAAGATCAAGAAGAAAGGAGAACTTGTTCCTAACTTCAAGATTTTGGGTTCTCCACAATCTAATTGATCAAACTAGATTGAAAGTTCTAAACATGCATTCTAAACACAAGATTACAAAGAAAAGCATAAAAGCTTGAGAGATTTAACTCTATGAAAAATTCACTCAAGTTCAAAGTCTTGTTCTTAAAATGTTGCAATTACATCCTATTTAAACTAATTGAAAAAGAACTATGAAAAACCTTTCACCAAATTGTCTAAATTCATCTACACCCTTTCAACTACTCTAATAAATATAAATACATGAATTAATTGGATACATAGCACATTAAATATGTGAACGAATCTAGATTTTTAGATTCATTATGGCTCTTGGATGTTCATAGTGACTCTTGGATGAAACTTTTCATCATGGGCTGGAAACTTAGTTTGGAAGCAGCATTTAATCCCTCTTGAAGTCTTTTAGCTCTAGCTCTTGTCATTGGTCCTTGTGGCATAATGATTCCTCATAATTGGGTTGACTTGGAAAGTTCTCCTATTGATTTTCAGCATGAAGTTCATTTGATCTAGGTTGAGCTTGTTTAGCTTCATTTTCCTCTTCATTTGAGTTGGTTTGAGCTTGTTGAGCCTTATTTTTCTCTTGGTTGGTTGACTCCTTATTAGGGGAGGATGAACTGAAATTTTATTTTAGGCATACAAAGAATAAATTCAATAGTTAAAATGGGTAATTGGAGTACTTATTGTGAAGAGAGGATCGTGGCAATGGCAGAGTAGGACCCCGGAGGATTGGAAGGTGAAATGAAAGGATGCATTTGGATGCTCTCCCTTCCATGCGATTGACCACTTTGCATAAGATGGAATTAGAAACCGGATTTAATTTAGATGGTCATAATTCTGTTGTTTTAAACTGTATATCTAGACCAATTAAAGAAGAATATTACATGGAAGTCAATCTTGTGCTGTGAGTAGTTGTGTTTGGGATTCTTTTTTCCGGATGTTTGGTTTGATGATATCTTGTCACAGGGATGTTAGTGCTATGATCGAGGAGTTCCTCCTCAATTCGCCTTTTGGGGAGAAAATCCACTTTTTATCTCGTGCAAGGGCATCCACGATCTGAGTTTTGTGGGGCGAATGGAATAGGAGTGTTTAAGAGAGTGGATAGGGATCCTTCAGAAGTTTGGCCCCTTGTTTGTTTTCATGTTTCTCTTTGGGCTTCGATTTCGAAGGCTTTTTATAACTATTATATAGGCATTTTGTTGCATAGTTGGAGCCCCTTCTTGTAAAAGGAGATCTCCTTTTTTCGTGGGCTTGTTTTTTGTATGTCCGTGTATTCTTTCATTTTTTTTTCTTAATGAAAGTTGTTGTTTCCATTAAAAAAAAAGAAGAAAAAAAAAAGTTCTCTGACATCTAATTCGATTTCCTCGATTTATGAGTTTGAATTGTTTGTCTCTAGTTGCAGGAGATGATTCATGTCCACTCCATAATCTTTTGTTGTTGTGTCTTAAATGAATGTCTGTATGTCAAATTTACTTGGGAATTAGGTCCTTTATCATTGTAACTCTCAATAAGTTAGGAACCTTAGATAAATGATAAACAAGGTTTGATCTTTGTCTTTTCTCTTTTTCCGGGGGTGGTGTGGTAGTACTCCTTTGAGTTTTCTTAAGCATCTACCTTGTCATCACTTCATCTTTCTTATAGAAGAGATCAAATTTCATTGAAATCTTTAACTTTTAAACTCACTCAAGTTAAAGGTCTTGTAGGTAATCTTTCTTTTATTTGTGTTTCGTATAATCACTAAATTATTAATCAACGTGGGACAGGCATGTTGGCATACACAATTACATTTTTAGATATAACCGCTCAGACACTATGCATGTTCTTTTTTCAATTTCTCATTTCTATTACTCAAAATGGGGCAAATTGAGTGTTGACGAAAAAAAGCTGAAGATAAAGCTGGGGAGGAACCCGCCAGAGTTAAGAAAGAGGATAACCACAAGGAGGGTGAGCCAGAAAAATCAGATGTAGAGAAGAATAATGATGAGTAG

mRNA sequence

ATGAGACAGCCTAAGACGCTTAAGATCTGCACTAATCATCTTGTTCTTCCATCAATGATGGTTCAGGAACACGCGGGAAATGATAAATCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGCGAATTGAAAGATGAGCTTTTCTGTATCAGATTCTCATCTATTGAGAGAACTACAGTATTAATCTACGATCATGATATGGATCTAAGTCTAATGTTTCCCTTAAACATGGTGATACTTGGTTCTATTAAAGATTCAAGCACTTCTATAATTCTGTTTCTGTGTTTAAAATGGGTAATTGGAGTACTTATTGTGAAGAGAGGATCGTGGCAATGGCAGAGTAGGACCCCGGAGGATTGGAAGTTGCAGGAGATGATTCATGTCCACTCCATAATCTTTTGTTGTTGTGTCTTAAATGAATGTCTGTATGTCAAATTTACTTGGGAATTAGGTCCTTTATCATTAAGAGATCAAATTTCATTGAAATCTTTAACTTTTAAACTCACTCAAGTTAAAGGTCTTGTAGCTGAAGATAAAGCTGGGGAGGAACCCGCCAGAGTTAAGAAAGAGGATAACCACAAGGAGGGTGAGCCAGAAAAATCAGATGTAGAGAAGAATAATGATGAGTAG

Coding sequence (CDS)

ATGAGACAGCCTAAGACGCTTAAGATCTGCACTAATCATCTTGTTCTTCCATCAATGATGGTTCAGGAACACGCGGGAAATGATAAATCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGCGAATTGAAAGATGAGCTTTTCTGTATCAGATTCTCATCTATTGAGAGAACTACAGTATTAATCTACGATCATGATATGGATCTAAGTCTAATGTTTCCCTTAAACATGGTGATACTTGGTTCTATTAAAGATTCAAGCACTTCTATAATTCTGTTTCTGTGTTTAAAATGGGTAATTGGAGTACTTATTGTGAAGAGAGGATCGTGGCAATGGCAGAGTAGGACCCCGGAGGATTGGAAGTTGCAGGAGATGATTCATGTCCACTCCATAATCTTTTGTTGTTGTGTCTTAAATGAATGTCTGTATGTCAAATTTACTTGGGAATTAGGTCCTTTATCATTAAGAGATCAAATTTCATTGAAATCTTTAACTTTTAAACTCACTCAAGTTAAAGGTCTTGTAGCTGAAGATAAAGCTGGGGAGGAACCCGCCAGAGTTAAGAAAGAGGATAACCACAAGGAGGGTGAGCCAGAAAAATCAGATGTAGAGAAGAATAATGATGAGTAG

Protein sequence

MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTVLIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDWKLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKAGEEPARVKKEDNHKEGEPEKSDVEKNNDE

Homology

[Close]

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot
Match: Q8RWG8 (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NHLV   M VQEHAGNDKSCVWHA DF+DGELKDELFCIRF+S+E
Sbjct: 91  MRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVE 146

[Close]

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot
Match: P92985 (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NHL+   M VQEH+GN+KSC+WHATDF+DGELKDELFCIRF+SIE
Sbjct: 88  MRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIE 143

[Close]

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot
Match: Q9LMK7 (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NH V   M VQEH GN+KSCVWHA DFADGELKDELFCIRF+SIE
Sbjct: 89  MRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIE 144

[Close]

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot
Match: P49792 (E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1    MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
            MR+ + LKIC NH + P M +  +AG+D+S VWHA D+AD   K E   IRF + E   +
Sbjct: 1234 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1293

[Close]

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot
Match: Q9ERU9 (E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1    MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
            MR+ + LKIC NH + P M +  +AG+D+S VWHA D+AD   K E   IRF + E   +
Sbjct: 1228 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1287

[Close]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL
Match: A0A7J0FSA2 (RAN binding protein 1 OS=Actinidia rufa OX=165716 GN=Acr_15g0001910 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT 60
           MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF S+E TT
Sbjct: 87  MRQSKTLKICANHLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFGSVEITT 145

[Close]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL
Match: A0A5A7UVW8 (Ran-binding protein 1-like protein a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00830 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 87/209 (41.63%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKS 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                           M     I +S                          Q +  E+ 
Sbjct: 147 F---------------METFQEIAES--------------------------QQKKGEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  +   L  KL+ V+    EDKA
Sbjct: 207 -----------------------------------KDASAAAGLLEKLS-VEEKKTEDKA 216

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
            EEPA+ KKED  K GEPEKSD EK NDE
Sbjct: 267 EEEPAKAKKEDEPK-GEPEKSDAEKKNDE 216

[Close]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL
Match: A0A438G1Y4 (Ran-binding protein 1-like c OS=Vitis vinifera OX=29760 GN=RANBP1C_2 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER 58
           MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF+S+ER
Sbjct: 88  MRQSKTLKICANHLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFASVER 144

[Close]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL
Match: A0A1S3C5F4 (ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 87/209 (41.63%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKS 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                           M     I +S                          Q +  E+ 
Sbjct: 147 F---------------METFQEIAES--------------------------QQKKGEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  +   L  KL+ V+    EDKA
Sbjct: 207 -----------------------------------KDASAAAGLLEKLS-VEEKKTEDKA 216

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
            EEPA+ KKED  K GEPEKSD EK NDE
Sbjct: 267 EEEPAKAKKEDEPK-GEPEKSDAEKKNDE 216

[Close]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL
Match: A0A6J1I618 (ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469535 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.4e-22
Identity = 85/209 (40.67%), Postives = 94/209 (44.98%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKS 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                           M     I +S                          Q +  E+ 
Sbjct: 147 F---------------METFQEIAES--------------------------QQKKEEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  S   L  KL+ V+    EDKA
Sbjct: 207 -----------------------------------KDASSAAGLLEKLS-VEEKKGEDKA 217

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
           GE P++ K+ED  K GE EKSD EK NDE
Sbjct: 267 GETPSKTKEEDEPKGGEAEKSDAEKKNDE 217

[Close]

BLAST of Lsi02G012660 vs. NCBI nr
Match: XP_038894912.1 (LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-24
Identity = 88/209 (42.11%), Postives = 99/209 (47.37%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCK- 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                                S  ++   I                    + Q +  E+ 
Sbjct: 147 ---------------------SFMETFQEIA-------------------EAQQKKVEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  +   L  KL+ V+   AEDKA
Sbjct: 207 -----------------------------------KDASAAAGLLEKLS-VEEKKAEDKA 217

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
           GEEPA+ KKED+ KEGEPE SD EK NDE
Sbjct: 267 GEEPAKPKKEDDPKEGEPENSDAEKKNDE 217

[Close]

BLAST of Lsi02G012660 vs. NCBI nr
Match: GFZ01582.1 (RAN binding protein 1 [Actinidia rufa])

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-22
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTT 60
           MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF S+E TT
Sbjct: 87  MRQSKTLKICANHLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFGSVEITT 145

[Close]

BLAST of Lsi02G012660 vs. NCBI nr
Match: XP_008457356.1 (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo] >KAA0060032.1 ran-binding protein 1-like protein a-like [Cucumis melo var. makuwa] >TYJ97289.1 ran-binding protein 1-like protein a-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 7.0e-22
Identity = 87/209 (41.63%), Postives = 95/209 (45.45%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKS 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                           M     I +S                          Q +  E+ 
Sbjct: 147 F---------------METFQEIAES--------------------------QQKKGEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  +   L  KL+ V+    EDKA
Sbjct: 207 -----------------------------------KDASAAAGLLEKLS-VEEKKTEDKA 216

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
            EEPA+ KKED  K GEPEKSD EK NDE
Sbjct: 267 EEEPAKAKKEDEPK-GEPEKSDAEKKNDE 216

[Close]

BLAST of Lsi02G012660 vs. NCBI nr
Match: RVW66217.1 (Ran-binding protein 1-like c [Vitis vinifera])

HSP 1 Score: 115.2 bits (287), Expect = 7.0e-22
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIER 58
           MRQ KTLKIC NHLVLP+M VQEHAGNDKSCVWHATDFADGELKDELFCIRF+S+ER
Sbjct: 88  MRQSKTLKICANHLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFASVER 144

[Close]

BLAST of Lsi02G012660 vs. NCBI nr
Match: XP_022970594.1 (ran-binding protein 1 homolog a-like [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 9.1e-22
Identity = 85/209 (40.67%), Postives = 94/209 (44.98%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIERTTV 60
           MRQ KTLKIC NHLVLPSM VQEHAGNDKSCVWHATDFADGELKDELFCIRF SIE    
Sbjct: 87  MRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIENCKS 146

Query: 61  LIYDHDMDLSLMFPLNMVILGSIKDSSTSIILFLCLKWVIGVLIVKRGSWQWQSRTPEDW 120
                           M     I +S                          Q +  E+ 
Sbjct: 147 F---------------METFQEIAES--------------------------QQKKEEN- 206

Query: 121 KLQEMIHVHSIIFCCCVLNECLYVKFTWELGPLSLRDQISLKSLTFKLTQVKGLVAEDKA 180
                                              +D  S   L  KL+ V+    EDKA
Sbjct: 207 -----------------------------------KDASSAAGLLEKLS-VEEKKGEDKA 217

Query: 181 GEEPARVKKEDNHKEGEPEKSDVEKNNDE 210
           GE P++ K+ED  K GE EKSD EK NDE
Sbjct: 267 GETPSKTKEEDEPKGGEAEKSDAEKKNDE 217

[Close]

BLAST of Lsi02G012660 vs. TAIR 10
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NHLV   M VQEHAGNDKSCVWHA DF+DGELKDELFCIRF+S+E
Sbjct: 91  MRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVE 146

[Close]

BLAST of Lsi02G012660 vs. TAIR 10
Match: AT5G58590.1 (RAN binding protein 1 )

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NHL+   M VQEH+GN+KSC+WHATDF+DGELKDELFCIRF+SIE
Sbjct: 88  MRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIE 143

[Close]

BLAST of Lsi02G012660 vs. TAIR 10
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-21
Identity = 45/56 (80.36%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MRQPKTLKICTNHLVLPSMMVQEHAGNDKSCVWHATDFADGELKDELFCIRFSSIE 57
           MRQ KTLKIC NH V   M VQEH GN+KSCVWHA DFADGELKDELFCIRF+SIE
Sbjct: 89  MRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASIE 144

The following BLAST results are available for this feature:

BLAST of Lsi02G012660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWG8	4.7e-21	82.14	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 ...	[more]
P92985	8.0e-21	78.57	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 ...	[more]
Q9LMK7	2.3e-20	80.36	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 ...	[more]
P49792	2.1e-08	45.00	E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2	[more]
Q9ERU9	2.1e-08	45.00	E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2	[more]

BLAST of Lsi02G012660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0FSA2	2.6e-22	88.14	RAN binding protein 1 OS=Actinidia rufa OX=165716 GN=Acr_15g0001910 PE=4 SV=1	[more]
A0A5A7UVW8	3.4e-22	41.63	Ran-binding protein 1-like protein a-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A438G1Y4	3.4e-22	89.47	Ran-binding protein 1-like c OS=Vitis vinifera OX=29760 GN=RANBP1C_2 PE=4 SV=1	[more]
A0A1S3C5F4	3.4e-22	41.63	ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=...	[more]
A0A6J1I618	4.4e-22	40.67	ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469535...	[more]

BLAST of Lsi02G012660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894912.1	2.6e-24	42.11	LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Benincasa hispida]	[more]
GFZ01582.1	5.4e-22	88.14	RAN binding protein 1 [Actinidia rufa]	[more]
XP_008457356.1	7.0e-22	41.63	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo] >KAA0060032.1 ran...	[more]
RVW66217.1	7.0e-22	89.47	Ran-binding protein 1-like c [Vitis vinifera]	[more]
XP_022970594.1	9.1e-22	40.67	ran-binding protein 1 homolog a-like [Cucurbita maxima]	[more]

BLAST of Lsi02G012660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30060.1	3.3e-22	82.14	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	5.7e-22	78.57	RAN binding protein 1	[more]
AT1G07140.1	1.7e-21	80.36	Pleckstrin homology (PH) domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 1..59 e-value: 7.0E-12 score: 45.7
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 1..56 score: 12.37017
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 1..63 e-value: 5.6E-15 score: 57.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..209
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..59
None	No IPR available	PANTHER	PTHR23138:SF156	RAN-BINDING PROTEIN 1 HOMOLOG C-LIKE	coord: 1..59
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G012660.1	Lsi02G012660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005096	GTPase activator activity