Lsi02G012410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G012410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RNA binding (RRM/RBD/RNP motifs) family protein
Location	chr02: 16318206 .. 16323045 (+)
RNA-Seq Expression	Lsi02G012410
Synteny	Lsi02G012410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTATGAATGTGTACATGTACAAGCACTTTGAGATTATATATATATATATATTTTGGATTAGATTGATATTTCACTACAACAAAATATAATTTGATGACACATGAATAGTAGCACATTTTGATAGGAGAGAGAAAAAACAGTCATTAAATATATTTTAATAAATTATAAATTAATTATCAATATGAAAATAATTGAAATAATAAGTCTTAGTTTAGGTTGTTCCATCTTTTTCTTTAAACCTCGTGAATGTGCAGCTACTTGACCTAGTCCCTTTTGTCTTCGTCTTTTGGTGAAGAAGCAACTAATACCTTCATCCCCCCATTTGGTCCCTTTCTCTACTGGTTTCTCCTCCTCTTTGTTTGTAATATCACAAGCTTCAAGTAAATTTAAGTTAATTATATCAAATTAATGGAATTTAGTTTTTCCGTTGCGTTTGAAACTTGGGGTCAAATTGTGATAATTGAAAATATTTATGAGTTAATTTGACTTTAATTAATAAAAGATTTGGAATTTTAGAGATATTTGGGTTATATTTTGAGTTTCGAGGGTAACAGTGTAATTGTGTTTAGATAATTCAATTTACATTGTTAGTTATAAAAGATTTGGAAATTAGATTCTATTTTAATGAGAGATTTGAAATTTTGAATTTAAGTGGATAAATAATTTTGAAGTTTTAAATTAAATTAGGAGGGAGATATTTTGGATTTTAGGTGGATAAGAATTGTTTGTGGAAGTTCGGTAGGTAAAATTTCATCTTGGTTGAGTATTTGGAAGTTATGTTACTTAATTTTGGCTTTTTGGATGGATGTTTAAAATCTAATTGGGATAATTAGATTTAAAGTAGAATAAATTTAGATATTTTAGTTTTCAAATTTTATGGCGTAGAGATTTTAAAATATGTCTCAAATTCTTAAATTTGTCGATTTGATATATATGAAGCCAAAATTGGGTTAATTGGAAAAGATATTGGGACATTTTGGAATTTAAGAGAGAAAAGGTGAGGATTTGAAATTTGGAAAAAATTTTATATTATATACGTGTATTAGGCTGGTTAAAAAAAAAAAAAAAAAAGAGCAAAATTTTTTTTGTTTTCCTTCTTCTTCACACAAGTGCCCCAAATCCCACCCTCTCTAAACTTTCTTCCTCTCTCTCAACTCTTCTCAACTCATCGCCATTTACAGTCACAACCACCGCTACTCTCGGTCCGACAGTCGTCCAGCCGCCGCCGTCCTCTGAGTTCGTTGCCTCTAGCGCCACTCTCGTTGGAATCAATGTTTTGGGTAAGTTTTTAAGTGTTTTTTTGGATGATTTTGATTGGTATTTGTTGACCCATTGGATTATTTGGTTTGGAGATTAGTTTACCCATGATTTTGAGATTAGGTTTGAAGTTTTGAAGGGATTAAAGTCGTTGTCCAGCAAGGATGGCGAGTGATTGGATGTTGTGGTGAGGTTTTGTTTGATGACTCTTAGCAGTGTACGCGTGATTCAACGAAATCTTGTATATATTGTCCAGCTACCACTTAATCTGGCAGATGAAGAATATTCTGCTTCTCTGTTTGTTTACTTTTGGTTCTGGTGGAAGTAATGGATGCCCTCTTATCATCCCTTGTGCAGCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTTTAAAAGTGTCGATGTCCGATACAGCAACTTGAGTCATTCAACAATTTCCTAATAATACGGGTAGTGTATAAGTTCAAATGTTCATCAGGCAATGACTAACCTATTTTTTCCCCTTAAAACAAATTGTTTTTATTATTTACGTAGGTTATTTAACTTTCTTATATTTCATTACATAGTAAATTCCCTCTTTGGAACATTTTCTTCATATGGTATCTACACGAAGGCTGAATAGCTGTTTGAATTGGGCATTGACATAATTCTTATTCTGTGCTCTACTTAGGTGTATCATGTATGCATTCAAAAATATTTATTTATGTGTTATATCATTATTTAAATGGAATTTTTTTTATTTGCTTGTAACTTTTTTGGGTTAGATATATTACATACTCAAAAGACGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAGTTTGCCTTGGAGGGAAAACCATTAAGGTTAGTGCATATATGAGTTGTAAATTCTATTGTACATCTCGAGTATTCTAAGTAATGTATTGGTGAAGATTTTGTAATTTGTTTTCTTTGGGTGCCTCAATATTAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGGTATGCATTTTATAATTTGTTTCCCTTGTTTTTTAATATTGTAGTTTTACCAATGAAAATTTCACAACTTTTACATCTGCTTTGGATCATAATGTTATCAACTAATATTTCAGCCTTGCACCAACCCTAATTGTTTGTATTTACACGAGGTTAGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACAAGGTGTGATAATCATTTTGCATTTAAAATTGCTGTTGTGCTTAACTTGGTGCTGGATTTCTCAAAAGTTCGTTTTGTTTTGATTTTTCTTATACTTTTTAGTAGCTTTGAGAGTCAAACCAACACTTAGACACTTTTTAGGTGGTTGAGACTTAAAGTATCACTTAGGCACTTCCTAGGAACTTTATATGTATTTTTCATAGTCAAAAGGACAATAAGTTAGTTTTTTCTTTTCTTTTCGTTTTAGGTGGTTTTAAGAGTTGAAGCAACACTTAGGAGCTTTTTAAAACTTTTTTTTGTTGTTGTTTTGAGAGTCAGTGTTGCTTAGACATTTTTTAAGTGGTTTTTAGAGTTATGTCACTTAGACACTATTTAAAAGAAATTTTATGTGCTTTTTAAATTGTTTTGAGAGTTAAAGTATCACTTCGGCTCTTTTTACGAACTTTATATATATTTTTCATAGTCAAATGGACACTTAGCTACATTTTATTAACTTTTTAGGTAGTTTTGAGAGACGAAGTAAAGTAACATGTAGGAACTTTTTTAGAACTTTTTATGTGATTTTGAGAATCTATTGTATTATATTCTTGTGAAATCTATGTTGAATACAATTTGAGGCTTTGATTTTCTTTGAAGTGTACACAATTATTTATAGGTTTTGACCAAATATGCTATGAATAGTCTTATTCTTGTTGAAGTGTACACAATTATTTATAGCTAATTTTTGTTGTTTGTTTGTTCAATCAACCATGATCTTATCTTCCCTTGTACTATTGTTGACTATTGTGATCAGGTAGTTGATGTTGGAATGGATGTGTTTTATTGCCTTTTGGTTTGCCATTTCTTCCTCAAATCTTTTAAATTCTATACTTAATAGATTTTAAAATGAATCCAATTTTCTTTTATTTTAGATTATATACCCATTGATTCTTTCTTTTCTTTTTTTTTTAGCATTGCAGTTGACAAGTCTTGATGTGATTAACAAGGTACAAATTTTGCTTTTCTTTTTCTTTTTTAAATTTTCAGTTGATTTTTTTCTCATTAGAGAGCTACCCATACTTTTTAACAAAATTGTGTCATACAAATGAGATACTAGGTCAACTTTGAAGAAATATATTCCATTCACATGTATTTGATTTCATCATATTTCTTTGTAGTTAGTTCTATCAAATTGGTCAAAATTTTTCTTTGTTACTAAATTATTTTATACCTAATCACAGGAATAATAGACAATGTCATGGAATAAATAAGTTTTCGGTCTTGACAACCAATTGCGCGAAACTAGGATCAAGAAGTTCACTATAAGCACTTGAAGTAAGTTTGACACTTAAATGAATCCAATATTTTTCTTTCATGTTTATTTTATACTTGTGGTTTTTTAATGGATGTTTATGAGCATTAATAGGAGGAGATTAATGTTTGTTATTATGATTTTACTTATATTTGAGAGAAATACTTATGACTTATGTCGGTAGAGTGTAGTAGACTATTTGAGAAAGTTGTAACTCTTGCTATTATACCACTCACTTTTGTAATTTTGAGTTTTAGAGTAGGGTTACTAAATTTATTAATAAATCTAGTAACCATACTCCAAAACTCAAATTTGAGTTTTACAACGAAGTAGAGATTTTTGTTAAGAATAATGCATGAAAATTAAAGAATAAAAAACTAAATAGCTTTTTGCATGAAATCAGGAATTAAACCAAATAATCTATTAGTTTTAAAATTAAACAATATATTTAAGAATATAAAGACTAAAATGCAATAAATATTAAGAAAATTTTCACAAATGAAAAAAATGTCAAATTATTTAGAGAAAATTGCAAAAAAAATACTGATAGACAATGATAGACTTCTATCAGCATCTACTAGTGATAGACTTCTATCATTTCTATCACTGATAGACCCTGATAGACTTCTATCAGCGTCTATCACAACTATCTAAAAATTTTACTATTTTGTGTAAATAGTTTCCCTTATTTTTCTATTTTTAAAAAAAAAAGTATCCGAAGAAATTGTGAATATTCTCTCCCTCGTCTTAATTTTCTCCATGCTACCTCATTCCTCTTCTAGATAGGGCTTCCCCACTCTATTAAGAGTGGGTCATATAGTAGGGAGAAAAGAAAAAGAACACTCCTAACTATAATAATAATAATCACTATCTAAATTATAGTGGTCGATTATAATTAACCATTATAATTTAATTAGTGATTATTATCCTGATAGTTTGATAAAGCCTTATAGATAGTAGTCTTTATTGTTTGGCTTTCTACACTCTACAATATATGTGTTCATCTCTAACTATTAGTCAATTAGTCTGTCAATTGAAATCATCTTGAAAGAAGTGTATGTGTCGACTTAG

mRNA sequence

ATGAGTCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTTTAAAAGTGTCGATATATATTACATACTCAAAAGACGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAGTTTGCCTTGGAGGGAAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCTTGCACCAACCCTAATTGTTTGTATTTACACGAGGTTAGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACAAGTCTGTCAATTGAAATCATCTTGAAAGAAGTGTATGTGTCGACTTAG

Coding sequence (CDS)

ATGAGTCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTTTAAAAGTGTCGATATATATTACATACTCAAAAGACGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAGTTTGCCTTGGAGGGAAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCTTGCACCAACCCTAATTGTTTGTATTTACACGAGGTTAGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACAAGTCTGTCAATTGAAATCATCTTGAAAGAAGTGTATGTGTCGACTTAG

Protein sequence

MSLLQRREYFGQYGKVLKVSIYITYSKDEEVVRCIQNVHQFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEIILKEVYVST

Homology

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BLAST of Lsi02G012410 vs. ExPASy Swiss-Prot
Match: Q09818 (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-19
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MSLLQRREYFGQYGKVLKVSI---------------YITYSKDEEVVRCIQNVHQFALEG 60
           +++L+  EYFGQYGK++K++I               YITY + E+  R I  +     +G
Sbjct: 133 INVLKGPEYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDG 192

Query: 61  KPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIIS 93
           + LRA +GTTKYC ++LRN  C NP+C+YLHE   + DS+TK+++ S
Sbjct: 193 RHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLAS 239

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BLAST of Lsi02G012410 vs. ExPASy Swiss-Prot
Match: O95628 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-18
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGK 62
           +L+R EYFG++GK+ KV                S Y+TY + E+ +R IQ V+   ++G+
Sbjct: 125 VLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 184

Query: 63  PLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEIILKEV 108
            L+A  GTTKYC  +L+N+ C  P+C+YLHE+  +  SFTK+E+ +       + +L+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244

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BLAST of Lsi02G012410 vs. ExPASy Swiss-Prot
Match: Q8BT14 (CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-18
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV----------------SIYITYSKDEEVVRCIQNVHQFALEGK 62
           +L+R EYFG++GK+ KV                S Y+TY + E+ +R IQ V+   ++G+
Sbjct: 125 VLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 184

Query: 63  PLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEIILKEV 108
            L+A  GTTKYC  +L+N+ C  P+C+YLHE+  +  SFTK+E+ +       + +L+E+
Sbjct: 185 TLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQEL 244

[Close]

BLAST of Lsi02G012410 vs. ExPASy Swiss-Prot
Match: P34909 (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOT2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-17
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 4   LQRREYFGQYGKVLKV------------------------SIYITYSKDEEVVRCIQNVH 63
           L+  +YFGQYGK+ K+                         +YIT+   ++  RCI  V 
Sbjct: 157 LKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYITFGSKDDAARCIAQVD 216

Query: 64  QFALEGKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEI 91
              ++G+ ++A +GTTKYC ++LR +PC NPNC++LHE   + DSF K E+
Sbjct: 217 GTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKREL 267

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BLAST of Lsi02G012410 vs. ExPASy TrEMBL
Match: A0A1S3CK79 (uncharacterized protein LOC103501902 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501902 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. ExPASy TrEMBL
Match: A0A6J1CXK4 (uncharacterized protein LOC111015505 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015505 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. ExPASy TrEMBL
Match: A0A5A7SZD0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00780 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. ExPASy TrEMBL
Match: A0A6J1CZ27 (uncharacterized protein LOC111015505 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015505 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. ExPASy TrEMBL
Match: A0A1S3CLR8 (uncharacterized protein LOC103501902 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103501902 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. NCBI nr
Match: XP_022146241.1 (uncharacterized protein LOC111015505 isoform X1 [Momordica charantia] >XP_022146243.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia] >XP_022146244.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia] >XP_022146245.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia] >XP_022146246.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. NCBI nr
Match: XP_038901785.1 (uncharacterized protein LOC120088502 isoform X3 [Benincasa hispida])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 148 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 207

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 208 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 265

[Close]

BLAST of Lsi02G012410 vs. NCBI nr
Match: XP_022146247.1 (uncharacterized protein LOC111015505 isoform X2 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. NCBI nr
Match: XP_008463873.1 (PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo] >XP_008463874.1 PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo] >KAA0035286.1 uncharacterized protein E6C27_scaffold228G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. NCBI nr
Match: XP_008463876.1 (PREDICTED: uncharacterized protein LOC103501902 isoform X3 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 88/118 (74.58%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQRREYFGQYGKVLKV                  S+YITYSK+EE VRCIQNVHQF LE
Sbjct: 126 LLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVLE 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPLRACFGTTKYCHAWLRNVPCTNP+CLYLHEV SQEDSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. TAIR 10
Match: AT5G60170.2 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 160.6 bits (405), Expect = 7.1e-40
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQ +EYFGQYGKVLKV                  S+YITY K+EE VRCIQ VH F L+
Sbjct: 126 LLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVHGFILD 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           GKPL+ACFGTTKYCHAWLRNV C NP+CLYLHEV SQ+DSFTKDEIISAYT   ++ I
Sbjct: 186 GKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYTRSRVQQI 243

[Close]

BLAST of Lsi02G012410 vs. TAIR 10
Match: AT5G60170.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-40
Identity = 77/111 (69.37%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQ +EYFGQYGKVLKV                  S+YITY K+EE VRCIQ VH F L+
Sbjct: 126 LLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVHGFILD 185

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYT 96
           GKPL+ACFGTTKYCHAWLRNV C NP+CLYLHEV SQ+DSFTKDEIISAYT
Sbjct: 186 GKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYT 236

[Close]

BLAST of Lsi02G012410 vs. TAIR 10
Match: AT3G45630.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-38
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           LLQR+EYFGQYGKVLKV                  S+YITY K+EE +RCIQ+VH F L+
Sbjct: 125 LLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILD 184

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYT 96
           GK L+ACFGTTKYCHAWLRNV C N +CLYLHEV SQEDSFTKDEIISA+T
Sbjct: 185 GKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHT 235

[Close]

BLAST of Lsi02G012410 vs. TAIR 10
Match: AT2G28540.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-35
Identity = 67/118 (56.78%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           + QRREYFGQYGKV+KV                  S+YITYSK+EE +RCI++VH F L+
Sbjct: 125 MFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILD 184

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           G+ L+ACFGT KYCHAWLRN+PC+N  CLYLHE+ +QEDSF+KDE ISA+    ++ I
Sbjct: 185 GRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDI 242

[Close]

BLAST of Lsi02G012410 vs. TAIR 10
Match: AT2G28540.2 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-35
Identity = 67/118 (56.78%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 3   LLQRREYFGQYGKVLKV------------------SIYITYSKDEEVVRCIQNVHQFALE 62
           + QRREYFGQYGKV+KV                  S+YITYSK+EE +RCI++VH F L+
Sbjct: 125 MFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILD 184

Query: 63  GKPLRACFGTTKYCHAWLRNVPCTNPNCLYLHEVSSQEDSFTKDEIISAYTSLSIEII 103
           G+ L+ACFGT KYCHAWLRN+PC+N  CLYLHE+ +QEDSF+KDE ISA+    ++ I
Sbjct: 185 GRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDI 242

The following BLAST results are available for this feature:

BLAST of Lsi02G012410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09818	3.0e-19	41.12	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]
O95628	5.7e-18	37.19	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 S...	[more]
Q8BT14	5.7e-18	37.19	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 ...	[more]
P34909	2.8e-17	36.04	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]

BLAST of Lsi02G012410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK79	5.9e-42	74.58	uncharacterized protein LOC103501902 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CXK4	5.9e-42	74.58	uncharacterized protein LOC111015505 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7SZD0	5.9e-42	74.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1CZ27	5.9e-42	74.58	uncharacterized protein LOC111015505 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CLR8	5.9e-42	74.58	uncharacterized protein LOC103501902 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lsi02G012410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146241.1	1.2e-41	74.58	uncharacterized protein LOC111015505 isoform X1 [Momordica charantia] >XP_022146...	[more]
XP_038901785.1	1.2e-41	74.58	uncharacterized protein LOC120088502 isoform X3 [Benincasa hispida]	[more]
XP_022146247.1	1.2e-41	74.58	uncharacterized protein LOC111015505 isoform X2 [Momordica charantia]	[more]
XP_008463873.1	1.2e-41	74.58	PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_008463876.1	1.2e-41	74.58	PREDICTED: uncharacterized protein LOC103501902 isoform X3 [Cucumis melo]	[more]

BLAST of Lsi02G012410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60170.2	7.1e-40	66.10	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G60170.1	9.3e-40	69.37	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G45630.1	1.8e-38	67.57	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G28540.1	4.0e-35	56.78	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G28540.2	4.0e-35	56.78	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..51 e-value: 2.1E-9 score: 39.1
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 2..92
None	No IPR available	PANTHER	PTHR12603:SF0	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4	coord: 2..92
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G012410.1	Lsi02G012410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003676	nucleic acid binding