Lsi02G012280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G012280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Structure-specific endonuclease subunit SLX1 homolog
Location	chr02: 16113995 .. 16119144 (-)
RNA-Seq Expression	Lsi02G012280
Synteny	Lsi02G012280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAAGGGGAAAGAGAAATCGGAAGTCTCTAAAACCATGGCTGTAACAGAGGAGGAGAAGGAAGACGATGAAGAAGAAGATGAAGAAGAAAGGAGCAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTACAAAGGCCATACCTATATCGGGTTTGAATCTTTCCCACTTCATTCGAGCATTTTTCTGTTCTTGCATCTCTAGATCGGATCTTCTATTTGCTTTGTAATTTCCCACTTTTCGGATTTAATGCTCTGCTTCCCTATACTGGAAATTTCTTTTCCTTCCTGCGTAAAGAAATATGGGAAATGCGTAAGTCGATCTGCAGTTGGATTGATTGGATGATTGTTTATATGGAATTTTAGATTTACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTTTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGGTTACATTTCTAGATTTTGAGCTTTAAATTTAGTTTGATTGTGCGTCTTTTATACTCGATTGTCTTCAACTAGCTGAATGATACTTCGATGATTATGCAAATGTTAAGATGTTAGAGTACATATTATGGATTTTTGGGGTTAAAGAATTTACTAAATTGTGTTGCTGGTTTCCCTCTTTAGTCATTTATTTTCTTGTGAGTCTCCATCAGTTCTAGAATTTGATGTTCTAACTATGGATGCAGTTTGAATGGGCGTGGCAGCATCCTAGTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGGTATGACGTATGAGAAAATTTACACGATTCTATCGAACTTTTTCTGTTAATTGTGTTGGAAATGTGAATATAATGTATAAATAAAGACAATACTCTTATAACTTTGAGGGTTTGGGGGGCGAAACTAAAGTTTATGTCTGATAGGGGCAATATCTTACTATTGTGATTTATGAAGGAGCAACAAACTGATGTAATTTCAATCAAATTTGTCTGCCAAACTTTCTCTTTATTCACTTTTTTCTCCTTATCCTTTCAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCCATGAGCTTCCATGCTATTCCGAAGGAGATCAATGTGTACTTGAAAATGAAGAGGATTTGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGATCGATGAAAGAAGTTCCAAATGAAGTTCCTAAAAAATTAATGGATTCTACTAGTACAGATGGAAGACCTCATGAATTGCGTGGATGCGATAAAGAATTTGTGAACAATGAACGAGTGCCACCTTCTTTGTGTACTCCATCTGATATTGATGCGGGTATGTCTCATGAATTGTGTGGATGCGATAAAGAATTTGAGAACAATGAACGAGTGCCATGTTCTTCGTGTACTCCATCTTATATTGATGCGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGAGGATGAAAGAGAGCCAGCTTCATGTGCTCAGTCTTGTATTGTAGCAGCAGGTACATCTAGGACTGAAATTATCATTGATGATGGAGATGAAGACCAATTAGAAGGGAATGGTATGAACTTGCAGAAACAACTTGGTAGGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCAAGGTGTACTAATGAGCTTCCTCCTGTTGAATATGAGATTATAGATGTGTCTACCCCGTCTCCCGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCTGGTAGGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAGAATGATGGATGGATTTGGATTCTGCATATAATATAAATTGGTTTCGAATGACTTTCAAGTGTGAAAGAAAAGTGCATTTTGCCATGAGAAGGTAGTATTTTCAACCCTTTCAGAGGGCAACGTGGGCTCAAGTTTGGTTGACCAACAACATGTTGTCAAGTTATGTATAATAATAATGGCCTTTCTTTCAAAAGCCATTTTTAAGGGAATCAAGTGTGAAAATGATATTCAAATGGCTTGTGTATTAGAAGAGAACGTGGTATCAATTAACTCCTTCCTTCCAAACGATTGGGCTCAAAGTTGAACTATGCATCTATAGCCCCATTACACATATACTAATAAAATGTTGACAGATTTTATTTTATTTTATTTTATTTTTCTTCAAAGAATTTTGTTCCATGAAACTGATTCTTCTTCCTCAACTTCTTTGAGTCAGAAATTTTGTCTTTTCTCATTGTAATATTTTGTTTCTGTTGTCTGAACCGTTTTTATGATTAATCAACAGTAACGAGCATTTAAGTTGAATAACGTTTTCAAAATTTGTATCAATTTCATGGCTCCAAAAGTTCAAATGTGTATCGCTGACAGAAAATTCATAAACATTATTATTATGGTGTAACAACGTTATGGGTGAATTTGGACATGACGGAAAAGACCAAAGGCTAAGGAAAGACCAAAGAAAATATGTCAAAAATAAAGTGGAATTAAGTTCAAAAAAGTCCAAATCTAACCAATCATTGGGCTAATCAAATTTAATCCTAACTTGTTTAGGCATAGGAAAAATTTTATATCCTAGTCTTCCGATCAATTTCCCTATAATTACATTATCAGAGATAACTAGAACTTCGAGTTTTTTTCCATTTTTGAATTCTCATTTCTGACTTTGACATCAAAGTCCTTTTTTTTTGTACTTTACAAATTTATCATTATTGTCACGTGAAGTGTATTTTCTCAAATATAAATTTTGACATCAACAAATGGAGATTCACCCCATTGTTGGTGAGATTTGGTTAAAAAAAAGTCTATGGACTAGAGAGAGGCATTCATTATGTTTGTTAGTTTGGTGAAGGATTGTGTACGGTAAGAAAATTTGAGGTCCCAATAAGATAGGGAAAAAGGAAGACCACAAAAACAATAACACGAGAGCTCTATTGGTAGCAATTAATTAGGTTAATTATTAAGGCCTGAATGGTTTTCTCTTACCATTTTTTCTTTCCCCCAAAAAGAAGGCAACAATGACAGGCATAATATCTCACCCTTTTTTCTGAATGAATATTGCAGAAACAAACAACAACAGTTGAGGAACCAATATCAACATAGTAGTAGCTGCAGGTACATCTTATGGGTTTTGCTCAGAACTTTTTTCTTTTGTTTCTGTGTGTTCCTTCTCCATAGCTTTTTTTTCATAATTTATTATGTTAATTTGAAAATTTGAATGACTTCTGTTTATAAAATCAATAATAATTAGGAGGGTTAGATTTCCCATATGATGAAATTTTTATTAAGTTGGATCTTAATTAAGGGTTAGATCCTAAATTAGCGATCAAGTTGTAATCTGCCCCTCTTCATTTCTGCCTTTTTTTTGGGGTCAACACTCAAACACACACATGGATATCACCAAATTCATCTATATGCATATGCATATGTGTGCTCAGTTTTTATCATTGACCAACTATTAATTAAATATAGAGAATGACTTGCAGTAATAAAGATTTCAGAGAGATTATGATATTTTATCTTTTTAACTTGACCTATTCTCAGTATTAACTAAAAAAATAGGAACAGCATTCGTTTCCAACACCTAAACTTTTAAGAGTTGTATGTAAATGTATCAATTTACATTGTTCCTTTTGAAAAAAAAATATATTGTGTGAAACTTATTATTGTATCAATTAAAGTCCTAAACTTTCATAAATGAATCAATTTAAACTCTTAGATAAAATTTCCTTTGAAAACCATTCATCCATTTACTTGAATCGTTCATTTTGTAAAACTGACATTTGAAGAAGTCGACCACATGTTTGAGAATTAATGTCAGGAATGAATTTCAAAGGTAACCATAATTGGTCTAATAATTAGTACAGTTACAAAAATTCAGTGGTTGTTATCAATACAACTCCAAAGTTTAGGGGTATCTATAAAGTTTTTTTTGTACGATGACCCATTCCCAAGCACCTTTATAATTAATGATCTGCCTCTCACAAACGTATAATCTAACCTTCTACTTACGTTGCACTACCGCATTTTATAACGAAACGCGTTAGGGATGATTATGTCTATACCACATTTTATACGATAGACATAGTCATCCCTAACACAATACGTTATAAAATGCGGTAGTGTGGTCTGACGTAAGTAGAATGATAGATTTCATAAGTTTGTGAGGGGTGGGTCATTAATCATAAAGGTCCCGGTGAATAAGATATATATATATATATATATGGATATTGGAGTTGGAAGATGATGGTGAGAATTGAAACAGGGAGAGAGGTGAAAAGATGAATATGGGAAGAACTTCAGGAGATTTGGGAGGAAAATCAAGGAAGATGAGACTGAAGAAGCTGAGAACAAGAGACGACATGTCGATTGAGGAAGAAGATTACCACACAGGAGTATCAGCATCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGAACTCCCAAAGCTAATTTCCTTGAAAATGGGGAAATCTTTTCTCCTTTAACTCCTCCACCTTCCTATTTCTCCAATGATACTAATTCCCCTCTCACCCATATTTCTTCTAAGCCTATTTCTTCTAAGACCAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTGTCAAGGCCACTTTACAGCCTTCCTCCCCCGGTTCTTTCTCGTCCTCCTCGTCTTCGTCTACGAGTTCTAGCAGGGAAAGACGGAGACCGGGAAGCCCTAGGAGATTGTCGTTTGATTCGAGGGTGGACGATGACGATAACGACGACGACAATGTAGAATCGCCTGTTTCTACTTTGTTCTTTGGACGTGGAAGTGATAAAGGATGTTATCCAAAATTGGTCAAGGTATTCACCAGAGATTCTAAATGAAAACAAAGTTTTATTAGGGAGATTTTTTTAAGAAAAAAAAAAAACTGAGAAATATATGCCTCTCATTGCTTGATGTAATG

mRNA sequence

ATGCGGAAGGGGAAAGAGAAATCGGAAGTCTCTAAAACCATGGCTGTAACAGAGGAGGAGAAGGAAGACGATGAAGAAGAAGATGAAGAAGAAAGGAGCAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTACAAAGGCCATACCTATATCGGATTTACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTTTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAGTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCCATGAGCTTCCATGCTATTCCGAAGGAGATCAATGTGTACTTGAAAATGAAGAGGATTTGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGATCGATGAAAGAAGTTCCAAATGAAGTTCCTAAAAAATTAATGGATTCTACTAGTACAGATGGAAGACCTCATGAATTGCGTGGATGCGATAAAGAATTTGTGAACAATGAACGAGTGCCACCTTCTTTGTGTACTCCATCTGATATTGATGCGGGTATGTCTCATGAATTGTGTGGATGCGATAAAGAATTTGAGAACAATGAACGAGTGCCATGTTCTTCGTGTACTCCATCTTATATTGATGCGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGAGGATGAAAGAGAGCCAGCTTCATGTGCTCAGTCTTGTATTGTAGCAGCAGGTACATCTAGGACTGAAATTATCATTGATGATGGAGATGAAGACCAATTAGAAGGGAATGGTATGAACTTGCAGAAACAACTTGGTAGGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCAAGGTGTACTAATGAGCTTCCTCCTGTTGAATATGAGATTATAGATGTGTCTACCCCGTCTCCCGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCTGGTAGAAACAAACAACAACAGTTGAGGAACCAATATCAACATAGTAGTAGCTGCAGGGAGAGAGGTGAAAAGATGAATATGGGAAGAACTTCAGGAGATTTGGGAGGAAAATCAAGGAAGATGAGACTGAAGAAGCTGAGAACAAGAGACGACATGTCGATTGAGGAAGAAGATTACCACACAGGAGTATCAGCATCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGAACTCCCAAAGCTAATTTCCTTGAAAATGGGGAAATCTTTTCTCCTTTAACTCCTCCACCTTCCTATTTCTCCAATGATACTAATTCCCCTCTCACCCATATTTCTTCTAAGCCTATTTCTTCTAAGACCAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTGTCAAGGCCACTTTACAGCCTTCCTCCCCCGGTTCTTTCTCGTCCTCCTCGTCTTCGTCTACGAGTTCTAGCAGGGAAAGACGGAGACCGGGAAGCCCTAGGAGATTGTCGTTTGATTCGAGGGTGGACGATGACGATAACGACGACGACAATGTAGAATCGCCTGTTTCTACTTTGTTCTTTGGACGTGGAAGTGATAAAGGATGTTATCCAAAATTGGTCAAGGTATTCACCAGAGATTCTAAATGAAAACAAAGTTTTATTAGGGAGATTTTTTTAAGAAAAAAAAAAAACTGAGAAATATATGCCTCTCATTGCTTGATGTAATG

Coding sequence (CDS)

ATGCGGAAGGGGAAAGAGAAATCGGAAGTCTCTAAAACCATGGCTGTAACAGAGGAGGAGAAGGAAGACGATGAAGAAGAAGATGAAGAAGAAAGGAGCAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTACAAAGGCCATACCTATATCGGATTTACAGTGAACCCGAAACGCAGAATCAGACAGCACAATGGTGAAATTAGATGCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTTTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAGTGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTGTAGTTTGAATATAACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCCATGAGCTTCCATGCTATTCCGAAGGAGATCAATGTGTACTTGAAAATGAAGAGGATTTGGAGTATAATAGAGAATGTGAAGAAATTTGTAGTTTTCGAGTATATGGATCGATGAAAGAAGTTCCAAATGAAGTTCCTAAAAAATTAATGGATTCTACTAGTACAGATGGAAGACCTCATGAATTGCGTGGATGCGATAAAGAATTTGTGAACAATGAACGAGTGCCACCTTCTTTGTGTACTCCATCTGATATTGATGCGGGTATGTCTCATGAATTGTGTGGATGCGATAAAGAATTTGAGAACAATGAACGAGTGCCATGTTCTTCGTGTACTCCATCTTATATTGATGCGGGTATGTCTTATGACTTGCGTGGATGTGATGAAGAACTCGAGGAGGATGAAAGAGAGCCAGCTTCATGTGCTCAGTCTTGTATTGTAGCAGCAGGTACATCTAGGACTGAAATTATCATTGATGATGGAGATGAAGACCAATTAGAAGGGAATGGTATGAACTTGCAGAAACAACTTGGTAGGAAGAATTTAACATCAGGAATAGCTTCTGAAATCAACAAAGTTTCAAGGTGTACTAATGAGCTTCCTCCTGTTGAATATGAGATTATAGATGTGTCTACCCCGTCTCCCGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCTGGTAGAAACAAACAACAACAGTTGAGGAACCAATATCAACATAGTAGTAGCTGCAGGGAGAGAGGTGAAAAGATGAATATGGGAAGAACTTCAGGAGATTTGGGAGGAAAATCAAGGAAGATGAGACTGAAGAAGCTGAGAACAAGAGACGACATGTCGATTGAGGAAGAAGATTACCACACAGGAGTATCAGCATCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGAACTCCCAAAGCTAATTTCCTTGAAAATGGGGAAATCTTTTCTCCTTTAACTCCTCCACCTTCCTATTTCTCCAATGATACTAATTCCCCTCTCACCCATATTTCTTCTAAGCCTATTTCTTCTAAGACCAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTGTCAAGGCCACTTTACAGCCTTCCTCCCCCGGTTCTTTCTCGTCCTCCTCGTCTTCGTCTACGAGTTCTAGCAGGGAAAGACGGAGACCGGGAAGCCCTAGGAGATTGTCGTTTGATTCGAGGGTGGACGATGACGATAACGACGACGACAATGTAGAATCGCCTGTTTCTACTTTGTTCTTTGGACGTGGAAGTGATAAAGGATGTTATCCAAAATTGGTCAAGGTATTCACCAGAGATTCTAAATGA

Protein sequence

MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMDSTSTDGRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYIDAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQLGRKNLTSGIASEINKVSRCTNELPPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNKQQQLRNQYQHSSSCRERGEKMNMGRTSGDLGGKSRKMRLKKLRTRDDMSIEEEDYHTGVSASVPFKWESEPGTPKANFLENGEIFSPLTPPPSYFSNDTNSPLTHISSKPISSKTNFLNSVFRKLSVKATLQPSSPGSFSSSSSSSTSSSRERRRPGSPRRLSFDSRVDDDDNDDDNVESPVSTLFFGRGSDKGCYPKLVKVFTRDSK

Homology

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BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot
Match: Q8BX32 (Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-29
Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 39  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query: 99  PTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP------IHELPCYSEGDQCVLENEEDLEYNREC 210
               +      CP+ P HM +   P      + + P  SE D    E + DL     C
Sbjct: 130 LRPDFRHEL--CPAPPAHMPIAFGPPPPQPLVPKRPAVSEADS---ERQLDLGTKARC 182

[Close]

BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot
Match: Q5PQP5 (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Slx1b PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.2e-29
Identity = 69/178 (38.76%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 39  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query: 99  PTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP------IHELPCYSEGDQCVLENEEDLEYNREC 210
               +      CP+ P HM +   P      + + P  SE D    E   DL     C
Sbjct: 130 LRPDFRHEL--CPAPPPHMPIAFGPPPPQPLVPKRPAASEADS---ERRLDLGAKASC 182

[Close]

BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot
Match: Q32PI0 (Structure-specific endonuclease subunit SLX1 OS=Bos taurus OX=9913 GN=SLX1A PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-27
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 39  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGF 98
           FF  YLL    PR++G  Y+GFTVNP RR++QHN G  + GAWRT  + PWEMVL ++GF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 99  PTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 158
           P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 159 FSTKYMKNAAGCPSLPEHMKVQVSP 183
               + ++   CP  P HM +   P
Sbjct: 126 LRADFRQDL--CPPPPPHMPLAFGP 148

[Close]

BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot
Match: Q0IH86 (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis OX=8355 GN=slx1a PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.9e-27
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 35  EVNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLC 94
           EV GF+  YLL    P+YKG  YIGFTVNP+RRI+QHN G+ + GAW+T  + PW+MVL 
Sbjct: 4   EVEGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLI 63

Query: 95  IYGFPTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNI 154
           ++GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W  L +
Sbjct: 64  VHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPL 123

Query: 155 TVNYFSTKYMKNAAGCPSLPEHMKVQVSPIHELP 188
           T+ +   +Y +        P HM +    +   P
Sbjct: 124 TLRWLRQEYRRELPLLLQPPLHMPLAFGQVRARP 157

[Close]

BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot
Match: A7STV9 (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis OX=45351 GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-25
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 37  NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIY 96
           +GF   YLL    P++KGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+L ++
Sbjct: 8   SGFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVH 67

Query: 97  GFPTNVSALQFEWAWQHPSESLAVRSAAATFKSLS-GVANKVKLAYTMLTLPAWCSLNIT 156
           GFP ++ ALQFEWAWQ P+ S  ++SAA   K     V    ++   +L +  W  L + 
Sbjct: 68  GFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLH 127

Query: 157 VNYFSTKYMKNAAGCPSLPEHMKVQVSPI 184
           + +   +Y          P HM V   P+
Sbjct: 128 IRWLMREYEMEFDPRCLPPFHMTVVYGPL 156

[Close]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL
Match: A0A1S3C574 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=LOC103497035 PE=3 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 5.5e-177
Identity = 332/425 (78.12%), Postives = 354/425 (83.29%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMA--VTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYI 60
           MRK KEK E+ KTMA  V +EEKEDD+E  EEER N VNGFFSCYLLASACPR+KGHTYI
Sbjct: 1   MRKRKEKPEICKTMAAVVQDEEKEDDDE--EEERGNGVNGFFSCYLLASACPRFKGHTYI 60

Query: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLA 120
           GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLA
Sbjct: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLA 120

Query: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKV 180
           VRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKV
Sbjct: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKV 180

Query: 181 QVSPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STS 240
           QVSPI ELPCYSEGDQ VLENE+D EY+RE EEICSF+VYGSMKEV NEVP+KLMD  T 
Sbjct: 181 QVSPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTG 240

Query: 241 TDGRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPS 300
           TDGRP                PP               L GCDKE E NE+VP SSCTPS
Sbjct: 241 TDGRP----------------PP--------------VLRGCDKELETNEQVPPSSCTPS 300

Query: 301 YIDAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQ 360
           Y+D GMSYDL  CDE LE DERE ASC QSC V AGTSRTEIIIDDG+E+Q EG+GMNLQ
Sbjct: 301 YVDVGMSYDLCACDEGLENDEREAASCGQSCTV-AGTSRTEIIIDDGEENQFEGSGMNLQ 360

Query: 361 KQLGRKNLTSGIASEINKVSRCTNEL-PPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRN 420
           +Q GRKNLTSGIASEI+KVSRC+N L P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG++
Sbjct: 361 EQPGRKNLTSGIASEISKVSRCSNGLVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKS 392

Query: 421 KQQQL 422
           +   L
Sbjct: 421 EMIDL 392

[Close]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL
Match: A0A5D3BBR0 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00560 PE=3 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 2.2e-173
Identity = 321/408 (78.68%), Postives = 342/408 (83.82%), Query Frame = 0


Query: 16  VTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI 75
           V +EEKEDD+E  EEER N VNGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI
Sbjct: 5   VQDEEKEDDDE--EEERGNGVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI 64

Query: 76  RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANK 135
           RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVRSAAATFKSLSGVANK
Sbjct: 65  RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANK 124

Query: 136 VKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIHELPCYSEGDQC 195
           VKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQVSPI ELPCYSEGDQ 
Sbjct: 125 VKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPIDELPCYSEGDQG 184

Query: 196 VLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTDGRPHELRGCDKEFVN 255
           VLENE+D EY+RE EEICSF+VYGSMKEV NEVP+KLMD  T TDGRP            
Sbjct: 185 VLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTGTDGRP------------ 244

Query: 256 NERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYIDAGMSYDLRGCDEEL 315
               PP               L GCDKE E NE+VP SSCTPSY+D GMSYDL  CDE L
Sbjct: 245 ----PP--------------VLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGL 304

Query: 316 EEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQLGRKNLTSGIASEIN 375
           E DERE ASC QSC V AGTSRTEIIIDDG+E+Q EG+GMNLQ+Q GRKNLTSGIASEI+
Sbjct: 305 ENDEREAASCGQSCTV-AGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEIS 364

Query: 376 KVSRCTNEL-PPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNKQQQL 422
           KVSRC+N L P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG+++   L
Sbjct: 365 KVSRCSNGLVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDL 379

[Close]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL
Match: A0A0A0M0Y6 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 GN=Csa_1G533630 PE=3 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 1.4e-172
Identity = 326/423 (77.07%), Postives = 347/423 (82.03%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MRK KEK E+ KT   T+EEKEDDE   EEER NEVNGFFSCYLLASACPR+KGHTYIGF
Sbjct: 1   MRKRKEKPEICKT---TDEEKEDDE---EEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI+ELPCYSEGDQ +LENE D EYNRE EEIC FRVYGSMKEV NEVP+KLMD  T TD
Sbjct: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRP                               H L GCDKE E NE+VP SSCTPSYI
Sbjct: 241 GRP------------------------------PHVLRGCDKELETNEQVPPSSCTPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           D GMSYDL  CDE LE DERE ASC QSCIV AGTSRTEI+IDD +E+QLEG+ MNLQ+Q
Sbjct: 301 DVGMSYDLCACDEGLENDEREAASCGQSCIV-AGTSRTEIVIDDEEENQLEGSSMNLQEQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNE-LPPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNKQ 420
            GR+NLTSGIASEI+KVSR  N  +P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG+++ 
Sbjct: 361 PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEM 386

Query: 421 QQL 422
             L
Sbjct: 421 IDL 386

[Close]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL
Match: A0A6J1I681 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 7.2e-161
Identity = 298/412 (72.33%), Postives = 329/412 (79.85%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MR+ KEK E+ KTMAV EE+KEDDE   +EER NE NGFFSCYLLASACPRYKGHTYIGF
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDE---DEERGNEGNGFFSCYLLASACPRYKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP HM+VQ+
Sbjct: 121 SAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQI 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI ELPCYSEGD+CVLENE D EYN+E EE+CS +V+G M EVPNE+P+ LMD ST TD
Sbjct: 181 SPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRPHELR                               G D+E ++NE+VP SSCTPSYI
Sbjct: 241 GRPHELR-------------------------------GSDEELDDNEQVPHSSCTPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           D G+SYDLRGCDE+      EPA CAQ C V      TEIIIDDG+E+QLEG+GM LQ+Q
Sbjct: 301 DVGVSYDLRGCDEQ------EPALCAQPCTVEGW---TEIIIDDGEENQLEGSGMKLQQQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNELPPVEYEIIDVSTPSPDCRTSSHRFKRRV 412
            GRK   SGIA+EI+KVS     LPPVEYE+IDVSTPSP CRTSSH+FKRR+
Sbjct: 361 PGRKKNLSGIATEISKVS---YGLPPVEYEVIDVSTPSPVCRTSSHKFKRRL 366

[Close]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL
Match: A0A6J1HZQ2 (Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469571 PE=3 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 7.2e-161
Identity = 298/412 (72.33%), Postives = 329/412 (79.85%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MR+ KEK E+ KTMAV EE+KEDDE   +EER NE NGFFSCYLLASACPRYKGHTYIGF
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDE---DEERGNEGNGFFSCYLLASACPRYKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP HM+VQ+
Sbjct: 121 SAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQI 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI ELPCYSEGD+CVLENE D EYN+E EE+CS +V+G M EVPNE+P+ LMD ST TD
Sbjct: 181 SPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRPHELR                               G D+E ++NE+VP SSCTPSYI
Sbjct: 241 GRPHELR-------------------------------GSDEELDDNEQVPHSSCTPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           D G+SYDLRGCDE+      EPA CAQ C V      TEIIIDDG+E+QLEG+GM LQ+Q
Sbjct: 301 DVGVSYDLRGCDEQ------EPALCAQPCTVEGW---TEIIIDDGEENQLEGSGMKLQQQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNELPPVEYEIIDVSTPSPDCRTSSHRFKRRV 412
            GRK   SGIA+EI+KVS     LPPVEYE+IDVSTPSP CRTSSH+FKRR+
Sbjct: 361 PGRKKNLSGIATEISKVS---YGLPPVEYEVIDVSTPSPVCRTSSHKFKRRL 366

[Close]

BLAST of Lsi02G012280 vs. NCBI nr
Match: XP_038894793.1 (structure-specific endonuclease subunit SLX1 [Benincasa hispida])

HSP 1 Score: 679.9 bits (1753), Expect = 2.1e-191
Identity = 343/418 (82.06%), Postives = 363/418 (86.84%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MRK KE+ E+SKTMAV EEEKEDDE+E+EEE SNEVNGFFSCYLLASACPRYKGHTYIGF
Sbjct: 1   MRKRKERPEISKTMAVAEEEKEDDEDEEEEEGSNEVNGFFSCYLLASACPRYKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLP+HMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPKHMKVQV 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI+ELPCYSEGDQCVLENE+D EYNRECEEICSFRVYGSMKEV NEVP+KLMD   STD
Sbjct: 181 SPINELPCYSEGDQCVLENEDDWEYNRECEEICSFRVYGSMKEVSNEVPQKLMDHQASTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRP EL GCDKEF NNE+VPP                               SSC PSYI
Sbjct: 241 GRPRELHGCDKEFENNEQVPP-------------------------------SSCNPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           DAGMSYDL GCDEELEEDEREPASCA SCIV    SRTEIIIDDGDEDQ+EG GMNL++Q
Sbjct: 301 DAGMSYDLHGCDEELEEDEREPASCAPSCIV-TDISRTEIIIDDGDEDQIEGTGMNLEQQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNELPPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNK 418
           L RKNL+SGIASEI+KVSRC  ELPPVEYE+IDVSTPSPDCRT+SHR KR+VTSGR++
Sbjct: 361 LCRKNLSSGIASEISKVSRCNIELPPVEYEVIDVSTPSPDCRTNSHRVKRKVTSGRSE 386

[Close]

BLAST of Lsi02G012280 vs. NCBI nr
Match: XP_008457313.1 (PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo])

HSP 1 Score: 630.9 bits (1626), Expect = 1.1e-176
Identity = 332/425 (78.12%), Postives = 354/425 (83.29%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMA--VTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYI 60
           MRK KEK E+ KTMA  V +EEKEDD+E  EEER N VNGFFSCYLLASACPR+KGHTYI
Sbjct: 1   MRKRKEKPEICKTMAAVVQDEEKEDDDE--EEERGNGVNGFFSCYLLASACPRFKGHTYI 60

Query: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLA 120
           GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLA
Sbjct: 61  GFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLA 120

Query: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKV 180
           VRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKV
Sbjct: 121 VRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKV 180

Query: 181 QVSPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STS 240
           QVSPI ELPCYSEGDQ VLENE+D EY+RE EEICSF+VYGSMKEV NEVP+KLMD  T 
Sbjct: 181 QVSPIDELPCYSEGDQGVLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTG 240

Query: 241 TDGRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPS 300
           TDGRP                PP               L GCDKE E NE+VP SSCTPS
Sbjct: 241 TDGRP----------------PP--------------VLRGCDKELETNEQVPPSSCTPS 300

Query: 301 YIDAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQ 360
           Y+D GMSYDL  CDE LE DERE ASC QSC V AGTSRTEIIIDDG+E+Q EG+GMNLQ
Sbjct: 301 YVDVGMSYDLCACDEGLENDEREAASCGQSCTV-AGTSRTEIIIDDGEENQFEGSGMNLQ 360

Query: 361 KQLGRKNLTSGIASEINKVSRCTNEL-PPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRN 420
           +Q GRKNLTSGIASEI+KVSRC+N L P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG++
Sbjct: 361 EQPGRKNLTSGIASEISKVSRCSNGLVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKS 392

Query: 421 KQQQL 422
           +   L
Sbjct: 421 EMIDL 392

[Close]

BLAST of Lsi02G012280 vs. NCBI nr
Match: KAA0060004.1 (Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa] >TYJ97262.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa])

HSP 1 Score: 619.0 bits (1595), Expect = 4.5e-173
Identity = 321/408 (78.68%), Postives = 342/408 (83.82%), Query Frame = 0


Query: 16  VTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI 75
           V +EEKEDD+E  EEER N VNGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI
Sbjct: 5   VQDEEKEDDDE--EEERGNGVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI 64

Query: 76  RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANK 135
           RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVRSAAATFKSLSGVANK
Sbjct: 65  RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANK 124

Query: 136 VKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVSPIHELPCYSEGDQC 195
           VKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQVSPI ELPCYSEGDQ 
Sbjct: 125 VKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPIDELPCYSEGDQG 184

Query: 196 VLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTDGRPHELRGCDKEFVN 255
           VLENE+D EY+RE EEICSF+VYGSMKEV NEVP+KLMD  T TDGRP            
Sbjct: 185 VLENEDDWEYDRESEEICSFQVYGSMKEVSNEVPQKLMDYQTGTDGRP------------ 244

Query: 256 NERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYIDAGMSYDLRGCDEEL 315
               PP               L GCDKE E NE+VP SSCTPSY+D GMSYDL  CDE L
Sbjct: 245 ----PP--------------VLRGCDKELETNEQVPPSSCTPSYVDVGMSYDLCACDEGL 304

Query: 316 EEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQLGRKNLTSGIASEIN 375
           E DERE ASC QSC V AGTSRTEIIIDDG+E+Q EG+GMNLQ+Q GRKNLTSGIASEI+
Sbjct: 305 ENDEREAASCGQSCTV-AGTSRTEIIIDDGEENQFEGSGMNLQEQPGRKNLTSGIASEIS 364

Query: 376 KVSRCTNEL-PPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNKQQQL 422
           KVSRC+N L P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG+++   L
Sbjct: 365 KVSRCSNGLVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDL 379

[Close]

BLAST of Lsi02G012280 vs. NCBI nr
Match: XP_004153269.1 (structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus])

HSP 1 Score: 616.3 bits (1588), Expect = 2.9e-172
Identity = 326/423 (77.07%), Postives = 347/423 (82.03%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MRK KEK E+ KT   T+EEKEDDE   EEER NEVNGFFSCYLLASACPR+KGHTYIGF
Sbjct: 1   MRKRKEKPEICKT---TDEEKEDDE---EEERGNEVNGFFSCYLLASACPRFKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV
Sbjct: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFMKNAAGCPSLPEHMKVQV 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI+ELPCYSEGDQ +LENE D EYNRE EEIC FRVYGSMKEV NEVP+KLMD  T TD
Sbjct: 181 SPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRP                               H L GCDKE E NE+VP SSCTPSYI
Sbjct: 241 GRP------------------------------PHVLRGCDKELETNEQVPPSSCTPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           D GMSYDL  CDE LE DERE ASC QSCIV AGTSRTEI+IDD +E+QLEG+ MNLQ+Q
Sbjct: 301 DVGMSYDLCACDEGLENDEREAASCGQSCIV-AGTSRTEIVIDDEEENQLEGSSMNLQEQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNE-LPPVEYEIIDVSTPSPDCRTSSHRFKRRVTSGRNKQ 420
            GR+NLTSGIASEI+KVSR  N  +P VEYE+IDVSTPSPDCRTSSHRFKRRVTSG+++ 
Sbjct: 361 PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEM 386

Query: 421 QQL 422
             L
Sbjct: 421 IDL 386

[Close]

BLAST of Lsi02G012280 vs. NCBI nr
Match: XP_022970648.1 (uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970650.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970651.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima])

HSP 1 Score: 577.4 bits (1487), Expect = 1.5e-160
Identity = 298/412 (72.33%), Postives = 329/412 (79.85%), Query Frame = 0


Query: 1   MRKGKEKSEVSKTMAVTEEEKEDDEEEDEEERSNEVNGFFSCYLLASACPRYKGHTYIGF 60
           MR+ KEK E+ KTMAV EE+KEDDE   +EER NE NGFFSCYLLASACPRYKGHTYIGF
Sbjct: 1   MRRRKEKPEIPKTMAVAEEKKEDDE---DEERGNEGNGFFSCYLLASACPRYKGHTYIGF 60

Query: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPSESLAVR 120
           TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSALQFEWAWQHP+ESLAVR
Sbjct: 61  TVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVFCIYGFPTNVSALQFEWAWQHPNESLAVR 120

Query: 121 SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQV 180
           SAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP HM+VQ+
Sbjct: 121 SAAATFKSLSGIANKIKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPGHMRVQI 180

Query: 181 SPIHELPCYSEGDQCVLENEEDLEYNRECEEICSFRVYGSMKEVPNEVPKKLMD-STSTD 240
           SPI ELPCYSEGD+CVLENE D EYN+E EE+CS +V+G M EVPNE+P+ LMD ST TD
Sbjct: 181 SPIDELPCYSEGDRCVLENENDWEYNKEYEEVCSSQVHGLMTEVPNEIPQTLMDYSTGTD 240

Query: 241 GRPHELRGCDKEFVNNERVPPSLCTPSDIDAGMSHELCGCDKEFENNERVPCSSCTPSYI 300
           GRPHELR                               G D+E ++NE+VP SSCTPSYI
Sbjct: 241 GRPHELR-------------------------------GSDEELDDNEQVPHSSCTPSYI 300

Query: 301 DAGMSYDLRGCDEELEEDEREPASCAQSCIVAAGTSRTEIIIDDGDEDQLEGNGMNLQKQ 360
           D G+SYDLRGCDE+      EPA CAQ C V      TEIIIDDG+E+QLEG+GM LQ+Q
Sbjct: 301 DVGVSYDLRGCDEQ------EPALCAQPCTVEGW---TEIIIDDGEENQLEGSGMKLQQQ 360

Query: 361 LGRKNLTSGIASEINKVSRCTNELPPVEYEIIDVSTPSPDCRTSSHRFKRRV 412
            GRK   SGIA+EI+KVS     LPPVEYE+IDVSTPSP CRTSSH+FKRR+
Sbjct: 361 PGRKKNLSGIATEISKVS---YGLPPVEYEVIDVSTPSPVCRTSSHKFKRRL 366

[Close]

BLAST of Lsi02G012280 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 251.5 bits (641), Expect = 1.7e-66
Identity = 121/175 (69.14%), Postives = 139/175 (79.43%), Query Frame = 0


Query: 38  GFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGF 97
           GFF+CYLL S  PR+KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGF
Sbjct: 26  GFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGF 85

Query: 98  PTNVSALQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNY 157
           PTNVSALQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNY
Sbjct: 86  PTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNY 145

Query: 158 FSTKYMKNAAGCPSLPEHMKVQVSPIHELPCYSE-GDQCVLENEEDLEYNRECEE 212
           FS+KY  +    PSLP HMKVQV  + +L  +++  D    E+EE  E N E ++
Sbjct: 146 FSSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDD 200

[Close]

BLAST of Lsi02G012280 vs. TAIR 10
Match: AT2G30350.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 126.7 bits (317), Expect = 6.5e-29
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 104 LQFEWAWQHPSESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYM 163
           LQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY 
Sbjct: 58  LQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYFSSKYA 117

Query: 164 KNAAGCPSLPEHMKVQVSPIHELPCYSE-GDQCVLENEEDLEYNRECEE 212
            +    PSLP HMKVQV  + +L  +++  D    E+EE  E N E ++
Sbjct: 118 HHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDD 166

[Close]

BLAST of Lsi02G012280 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-13
Identity = 71/170 (41.76%), Postives = 87/170 (51.18%), Query Frame = 0


Query: 469 EEDYHTGVSASVPFKWESEPGTPK--------ANFLENGE----IFSPLTPPPSYFSNDT 528
           E DY+ G SA+VPFKWES+PGTP+        + F  + +    + +PLTPPPSYF    
Sbjct: 21  EGDYYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYFYASP 80

Query: 529 NSPLTHISSKPISSKTNFLNSVFRKLSVKATLQPSSPGSFSSSSSSSTSSSRERRRPGSP 588
           +S   H+S K    KT   N++F  L  K    PSSP S SSSSSSS  SS  R    S 
Sbjct: 81  SS-TKHVSPK----KT---NTLFSSLLSKNRSVPSSPASSSSSSSSSVPSSPLRTSDLSN 140

Query: 589 RRLS--FDSRVDDDDNDDDNVESPVSTLFFGRGSDK--GCYPKLVKVFTR 623
           RR S  F+S                S+L +G  S K  GCY  LVKV  R
Sbjct: 141 RRRSMWFESG---------------SSLDYGSNSAKSSGCYASLVKVLLR 167

[Close]

BLAST of Lsi02G012280 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-10
Identity = 57/163 (34.97%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 460 RTRDDMSIEEEDYHTGVSASVPFKWESEPGTPKANFLENGEIFSPLTPPPSYFSNDTNSP 519
           R  DD +I+EE       AS+PF WES PGTPK +   +  +  PLTPPPSY+S+     
Sbjct: 4   RLEDDFAIDEERSSYYGGASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGI--- 63

Query: 520 LTHISSKPISSKTNFLNSVFRKLSVKATLQPSSPG-------SFSSSSSSSTSSSRERRR 579
              +S+    SK     S F   S+ + L+ S+ G       SFS SS+SS+SS      
Sbjct: 64  ---LSTPRTQSKVRSKLSKFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSPP 123

Query: 580 PGSPRRLSFDSR---VDDDDNDDDNVESPVSTLFFGRGSDKGC 613
               +R+S D +   +  +  +D+   SP STL    G   GC
Sbjct: 124 HSLKKRMSHDKKSPLLYANYEEDELRSSPTSTLCCSNGGRLGC 160

[Close]

BLAST of Lsi02G012280 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 9.7e-09
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 472 YHTGVSASVPFKWESEPGTPKANFLENGEIFSPLTPPPSYFSNDTNSPLTHISSKPISSK 531
           Y+ G  ASVPF WE+ PGTPK           PLTPPPSY+S+ ++S    +S      +
Sbjct: 32  YYYG-GASVPFLWETRPGTPKHALFSESLRLPPLTPPPSYYSSSSSSG-NKLSKARTIKQ 91

Query: 532 TNFLNSVFRKLSVKATLQPSSPGSFSSSS-SSSTSSSRERRRPGSPRRLSFDSRVDDDDN 591
           T F+ ++  +   + +   SS  S SSSS SSS+  S+   RP      S  S V +DD 
Sbjct: 92  TRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCS-RSYVKEDDE 151

Query: 592 DDDNVESPVSTLFFGRG 608
           ++    SP STL + RG
Sbjct: 152 EEIVSSSPTSTLCYKRG 165

The following BLAST results are available for this feature:

BLAST of Lsi02G012280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8BX32	1.7e-29	39.33	Structure-specific endonuclease subunit SLX1 OS=Mus musculus OX=10090 GN=Slx1b P...	[more]
Q5PQP5	8.2e-29	38.76	Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Sl...	[more]
Q32PI0	1.2e-27	41.38	Structure-specific endonuclease subunit SLX1 OS=Bos taurus OX=9913 GN=SLX1A PE=2...	[more]
Q0IH86	5.9e-27	39.61	Structure-specific endonuclease subunit slx1 OS=Xenopus laevis OX=8355 GN=slx1a ...	[more]
A7STV9	1.1e-25	40.94	Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis O...	[more]

BLAST of Lsi02G012280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C574	5.5e-177	78.12	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3BBR0	2.2e-173	78.68	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis melo var. makuwa...	[more]
A0A0A0M0Y6	1.4e-172	77.07	Structure-specific endonuclease subunit SLX1 homolog OS=Cucumis sativus OX=3659 ...	[more]
A0A6J1I681	7.2e-161	72.33	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HZQ2	7.2e-161	72.33	Structure-specific endonuclease subunit SLX1 homolog OS=Cucurbita maxima OX=3661...	[more]

BLAST of Lsi02G012280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894793.1	2.1e-191	82.06	structure-specific endonuclease subunit SLX1 [Benincasa hispida]	[more]
XP_008457313.1	1.1e-176	78.12	PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]	[more]
KAA0060004.1	4.5e-173	78.68	Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa] >TYJ9726...	[more]
XP_004153269.1	2.9e-172	77.07	structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]	[more]
XP_022970648.1	1.5e-160	72.33	uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima] >XP_022970649...	[more]

BLAST of Lsi02G012280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30350.2	1.7e-66	69.14	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.1	6.5e-29	59.63	Excinuclease ABC, C subunit, N-terminal	[more]
AT1G06930.1	2.2e-13	41.76	unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ...	[more]
AT3G56260.2	3.9e-10	34.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G40475.1	9.7e-09	37.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..585
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 548..569
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..450
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 548..612
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 506..527
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 21..371
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 21..371
None	No IPR available	CDD	cd10455	GIY-YIG_SLX1	coord: 39..114 e-value: 2.20502E-52 score: 172.417
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 37..138 e-value: 3.7E-24 score: 86.6
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 42..116 e-value: 2.7E-12 score: 46.8
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 38..120 score: 17.406075
IPR007789	Protein of unknown function DUF688	PFAM	PF05097	DUF688	coord: 478..594 e-value: 1.5E-4 score: 21.1
IPR027520	Structure-specific endonuclease subunit Slx1	HAMAP	MF_03100	Endonuc_su_Slx1	coord: 35..420 score: 23.94606

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G012280.1	Lsi02G012280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0051569	regulation of histone H3-K4 methylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006281	DNA repair
cellular_component	GO:0016593	Cdc73/Paf1 complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity
molecular_function	GO:0000993	RNA polymerase II complex binding