Lsi02G012180 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G012180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LURP-one-related 7
Locationchr02: 15783285 .. 15784082 (+)
RNA-Seq ExpressionLsi02G012180
SyntenyLsi02G012180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACGTAAGTATTCACCCTACTTTTGTTCATCGTCTCCTGTGTTAGTTTCAAGATTCAGTGTAATAGCTTTGTTTAGTATCCTGTTGTGAACTAGTTTTTTTCTTTCCTCTTCATGTTTGCTTGCAAGTTCCTAATCATGTGAAGAGCAAGTTCGTTGCCTCCAATTTTCAGAAGCTGAGTGTTTTTGATTAATTTTGTTGCGATCGTATGATCAAAAAGTTAGGAAAGGTAGATTCAACATGTTAGAATAACCCACATTTTTCTTTTCTACTTCGCCTTCAGGAATTAGATCCATTACTTTAATACGAAATAATTAGAGAATTCCAGCTCGTATCCACCAAAGAATTAGCAAAGTTTTCCTCCTTCTGTATGGGGAAGGAGAGTTTTAATATTGTATGACCTAAATGATTTTGGTGTTTCCTATTTCTAGCTTGCAAAATGATCTAGAATTTTAGTATCGACCATTTTTTCACAGTTTTTGTCTGTTATGTGCCTTCTAGTTGTTTGTGATTTTAGAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA

mRNA sequence

ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA

Coding sequence (CDS)

ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA

Protein sequence

MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAAVSPLISIYRVNNCDCWDLLKFLHIGHYIPNEPSL
Homology
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match: A0A6J1G943 (protein LURP-one-related 7 OS=Cucurbita moschata OX=3662 GN=LOC111452060 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MANSSDPAIC+ + PI VDLFL +KHPD+VT S GD ++RLSR+SLKS S+DKIVL DAA
Sbjct: 1  MANSSDPAICAASLPIPVDLFLSKKHPDHVTTSSGDFIFRLSRQSLKSSSIDKIVLHDAA 60

Query: 61 VS--PLISIYRVNNCDCWDLLK 81
           +  PLISI+RVN  + W   K
Sbjct: 61 AAAGPLISIHRVNK-ESWQGFK 81

BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match: A0A0A0K429 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
          MAN SDPAICS A PI +DLFL ++HPDY+TNS GDI+YR++R +LKS SVDKI+L  A 
Sbjct: 1  MANPSDPAICSPALPIPIDLFLSKQHPDYLTNSSGDIIYRINRHALKSSSVDKILLPHAD 60

Query: 61 AVSPLISIYRVNNCDCWDLLK 81
          A  PLISI+RVN  + W+  K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80

BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match: A0A6J1KES0 (protein LURP-one-related 7 OS=Cucurbita maxima OX=3661 GN=LOC111493191 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MA SSDPAIC+   PI VDLFL +KHPD+VT+S GDI++RLSR+ LKS S+DKIVL DAA
Sbjct: 1  MAKSSDPAICAAPLPIPVDLFLSKKHPDHVTSSSGDIIFRLSRQYLKSSSIDKIVLHDAA 60

Query: 61 VS---PLISIYRVNNCDCWDLLK 81
           +   PLISI+RVN  + W   K
Sbjct: 61 AAAAGPLISIHRVNK-ESWQGFK 82

BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match: A0A5A7T6Q3 (Protein LURP-one-related 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00070 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
          MANSSDP ICS A PI +DLFL ++HP Y+TNS GDI+Y+++R + KS SVDKI+L  A 
Sbjct: 1  MANSSDPTICSAALPIPIDLFLSKEHPHYLTNSSGDIIYKINRHAFKSSSVDKILLPHAD 60

Query: 61 AVSPLISIYRVNNCDCWDLLK 81
          A  PLISI+RVN  + W+  K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80

BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match: A0A1S3CIB3 (protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
          MANSSDP ICS A PI +DLFL ++HP Y+TNS GDI+Y+++R + KS SVDKI+L  A 
Sbjct: 1  MANSSDPTICSAALPIPIDLFLSKEHPHYLTNSSGDIIYKINRHAFKSSSVDKILLPHAD 60

Query: 61 AVSPLISIYRVNNCDCWDLLK 81
          A  PLISI+RVN  + W+  K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80

BLAST of Lsi02G012180 vs. NCBI nr
Match: XP_038884438.1 (protein LURP-one-related 7 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MANSSDPAICS A PI+VDLFL ++HPDY+TNS GDI+YR++R SLKS SVDKIVLLDAA
Sbjct: 1  MANSSDPAICSAALPIAVDLFLSKEHPDYLTNSSGDIIYRINRPSLKSSSVDKIVLLDAA 60

Query: 61 VS-PLISIYRVNNCDCWDLLK 81
           + PLISI+RVN  + W   K
Sbjct: 61 AADPLISIFRVNK-ESWQGFK 80

BLAST of Lsi02G012180 vs. NCBI nr
Match: KAG6607355.1 (Protein LURP-one-related 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MANSSDPAIC+   PI VDLFL +KHPD+VT S GDI++RLSR+SLKS S+DKIVL DAA
Sbjct: 1  MANSSDPAICAAPLPIPVDLFLSKKHPDHVTTSSGDIIFRLSRQSLKSSSIDKIVLHDAA 60

Query: 61 VS-PLISIYRVNNCDCWDLLK 81
           + PLISI+RVN  + W   K
Sbjct: 61 AAGPLISIHRVNK-ESWQGFK 80

BLAST of Lsi02G012180 vs. NCBI nr
Match: XP_022948358.1 (protein LURP-one-related 7 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 4.7e-18
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MANSSDPAIC+ + PI VDLFL +KHPD+VT S GD ++RLSR+SLKS S+DKIVL DAA
Sbjct: 1  MANSSDPAICAASLPIPVDLFLSKKHPDHVTTSSGDFIFRLSRQSLKSSSIDKIVLHDAA 60

Query: 61 VS--PLISIYRVNNCDCWDLLK 81
           +  PLISI+RVN  + W   K
Sbjct: 61 AAAGPLISIHRVNK-ESWQGFK 81

BLAST of Lsi02G012180 vs. NCBI nr
Match: XP_023523465.1 (protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
          MANSSDPAIC+   PI VDLFL +KHPD+VT S G+I++RLSR+SLKS S+DKIVL DAA
Sbjct: 1  MANSSDPAICAAPLPIPVDLFLSKKHPDHVTTSSGNIIFRLSRQSLKSSSIDKIVLHDAA 60

Query: 61 VS----PLISIYRVNNCDCWDLLK 81
           +    PLISI+RVN  + W   K
Sbjct: 61 AAAAAGPLISIHRVNK-ESWQGFK 83

BLAST of Lsi02G012180 vs. NCBI nr
Match: XP_004139831.1 (protein LURP-one-related 7 [Cucumis sativus] >KGN44278.1 hypothetical protein Csa_016427 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1  MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
          MAN SDPAICS A PI +DLFL ++HPDY+TNS GDI+YR++R +LKS SVDKI+L  A 
Sbjct: 1  MANPSDPAICSPALPIPIDLFLSKQHPDYLTNSSGDIIYRINRHALKSSSVDKILLPHAD 60

Query: 61 AVSPLISIYRVNNCDCWDLLK 81
          A  PLISI+RVN  + W+  K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G9432.3e-1864.63protein LURP-one-related 7 OS=Cucurbita moschata OX=3662 GN=LOC111452060 PE=3 SV... [more]
A0A0A0K4298.7e-1862.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=3 SV=1[more]
A0A6J1KES03.3e-1762.65protein LURP-one-related 7 OS=Cucurbita maxima OX=3661 GN=LOC111493191 PE=3 SV=1[more]
A0A5A7T6Q31.6e-1659.26Protein LURP-one-related 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3CIB31.6e-1659.26protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_038884438.11.3e-2070.37protein LURP-one-related 7 [Benincasa hispida][more]
KAG6607355.12.1e-1866.67Protein LURP-one-related 7, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022948358.14.7e-1864.63protein LURP-one-related 7 [Cucurbita moschata][more]
XP_023523465.11.8e-1763.10protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_004139831.11.8e-1762.96protein LURP-one-related 7 [Cucumis sativus] >KGN44278.1 hypothetical protein Cs... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G012180.1Lsi02G012180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane