Lsi02G011960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G011960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	OTU domain-containing protein 5
Location	chr02: 15162538 .. 15164968 (-)
RNA-Seq Expression	Lsi02G011960
Synteny	Lsi02G011960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTAGCACATGTTCAAGGGAGGGCTGGTACACAAAAGCATGACAAGAGACCATGGGCCAAGAAGAATGCACAGGCAGATGGGGATGAAGACCTTGGGGAAGACACTGCTGGAAATTTTGTGAAGATGAAGGGAAGACTGAAGAGGTTCCTTAATCACATGAAGTGTCGGAATGTGGGGCCGTGGGTGGAGTTTTTGGGCCAATTACACATAAAATGGTGAAGGTGCATTTCTTTTTAAAGCTGAATAACAAGGCAGCAAGTTGTTGGTTTGGCCTGGGCTGCCTCATTCTGTTTGGATTCCAATAGCAATAGCCCACCTGAAATTACACTAGTCGTGACCCGTGTGAACAGATTAAGCTTAACCGTAGCCACCTCAAGAAAATTTTCCACCTTTACAATGTCTACCATTTGAAAAATTCTGCCCCATGTCGCCGACTGCTGTGTAAGCTACTGCCGCTGATCAGCGTTTGTTAAAAAGGGAAAAAAAAGGAAGCCTCATTTCAACTTTTTGTAACCACACCTTGAGAACAAGGTGTATTAGAGGGGCGGGTAATGATAGGAATGCTAATTGAGATATTGTAAGGATATATTAATAATGAGTTATATAGTTTGTTGGGCTTTTTGGTTTCATATAGAGGGGGATGGGAAATGAAGAAGATGGGCAATATTTGGAGTATGAATTAGGGCTTAAGAGTATTCGTAAGACTGGGAGGGTCCAAGTACCTCGAACACTTGATTTATCTAGTAATTCTATTCTTCTTTATCTTTTAATACATTCGGGTTCTATCAGCTACTTGATAGGAGCACTTGCTATTAATATTGTTTTCCTTGGTGTCCTTATAGTTTGGGTTGGGCAGAGGTGGTGGTTAAAATTTCTTGAAAAGCTTAAATCTTCACTCAAGTAGTTTTAGCACGTCAAAGATTCCAGTCAGCAAGTTGTGTGTTTTTAAAATTTTTGTTGAACGTCTTATGGACCTTAATGTTTTTTTATATGCACTATGCAGGCAAATGTTGACAAGGATAAAGTGAAGGCTGCTTTAAAAGCGCAGCAAGATCAACAGCTTGATAATGCAAGTATCTTGGACTGTTAAATTTTAGATCACGGAGGATCTGTAAAATAAGAGTGATCTTTTACTTTTCTGACTTGACAGGCTCTTCTTGCTCAAGGACGGTATTTCTCAGATCTTGAGGTTACTGAAAAGGAAATCGAGCAGATGGTGATGGAAGCTTCGAGAGCTGAATATCTTGCTAAATACTCTTTGAAGCAGCAATTAGACCGAAGAGACAACTCCACCTCTGGTGCAGAACCGTCTTCTTCAGGCGCCAGTATGTATACGCTCTAGTAATCCATACTTAGTGATATGTCTATGTGACTGAAACTATTATGGAGTTTGAAATGGGAAGTAAAAGTGCATGAGTATGACAAGTTACTTTTATGTTTACTTAATAAGGTTTTGTTTCTAAAACTTCAGGGTCCTCAGGAAGTGAAGGTAATTGTAAGAGAGAGAGTGGGGTGCAGGAGTCAGTTTTAAGCAATGCGATGCGAACGGTGCTTTCGATGGGGTTCGGTTATCTACAGGTGATTGAAGCTTATAGCATATTTGGAGACGATGTGGATTCAATGGTTTGTTATTTGTTGGAAACTGGGGATAACAGCAGACGCAAAGGCAAAGCCACAGAATGATTGAGGAAAAGGAGCAGCCAGCAGCACAGCCATTACCTTAGGTCACTGATGGAAGAAGGTTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATTCCAACATCATTTGTTTCACTTAGAAAGTGAAGATGTTAAAGGAGAGGCATGTAGGGGAACGAACTTGAATCCTATTCTGATATGGTATGATAATAAAGCAAACTTGACCTTTTAATCTCTACTCTATTTCAAGCTCTCTATTGTTCCCACTTCCATCCCAGAAAATGTATGGTCGTTGATACGTATCCGGTATTATTTTCTTGTAAGCAATTCAAGAAAACCATAAAAAAAAAAAAAAATATTCTCACTTAAAATGTTTACTCGCTTTGGAGTCGGTCGAATCCTTCCTCTCAATCTGTGATGTATAATATTCAAACGATAGCATTTTGCTTATATATATGAGATCTAATACCTTTACCGTTACTGTTATCGTTAACGTTACATATATTGTTACTGTAACAGTATGAAAATTATGAATCTGCCACATTTATTGTTATCTTTACTATTACCGTCGCTTTTACTTTTAGGATCAAACAGTAATGTTAACAATTAACGGTAATAGTAAAATATGACAGGTTCATAATTTTAAGTAAATGCAATCAAGAGCAATCCAATTACATTTGTGATTCAGGTCCATTACGATTGATCTATCAATGAAATATCATTATGATTACATCAATTTTCATTATGAATTGGTAAACAT

mRNA sequence

ATGACGGTAGCACATGTTCAAGGGAGGGCTGGTACACAAAAGCATGACAAGAGACCATGGGCCAAGAAGAATGCACAGGCAGATGGGGATGAAGACCTTGGGGAAGACACTGCTGGAAATTTTGTGAAGATGAAGGGAAGACTGAAGAGGTTCCTTAATCACATGAAGTGTCGGAATGCAAATGTTGACAAGGATAAAGTGAAGGCTGCTTTAAAAGCGCAGCAAGATCAACAGCTTGATAATGCAAGACGGTATTTCTCAGATCTTGAGGTTACTGAAAAGGAAATCGAGCAGATGGTGATGGAAGCTTCGAGAGCTGAATATCTTGCTAAATACTCTTTGAAGCAGCAATTAGACCGAAGAGACAACTCCACCTCTGGTGCAGAACCGTCTTCTTCAGGCGCCAGGTCCTCAGGAAGTGAAGGTAATTGTAAGAGAGAGAGTGGGGTGCAGGAGTCAGTTTTAAGCAATGCGATGCGAACGGTGCTTTCGATGGGGTTCGGTTATCTACAGGTGATTGAAGCTTATAGCATATTTGGAGACGATGTGGATTCAATGGTTTGTTATTTGTTGGAAACTGGGGATAACAGCAGACGCAAAGGCAAAGCCACAGAATGATTGAGGAAAAGGAGCAGCCAGCAGCACAGCCATTACCTTAGGTCACTGATGGAAGAAGGTTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATTCCAACATCATTTGTTTCACTTAGAAAGTGAAGATGTTAAAGGAGAGGCATGTAGGGGAACGAACTTGAATCCTATTCTGATATGGTATGATAATAAAGCAAACTTGACCTTTTAATCTCTACTCTATTTCAAGCTCTCTATTGTTCCCACTTCCATCCCAGAAAATGTATGGTCGTTGATACGTATCCGGTATTATTTTCTTGTAAGCAATTCAAGAAAACCATAAAAAAAAAAAAAAATATTCTCACTTAAAATGTTTACTCGCTTTGGAGTCGGTCGAATCCTTCCTCTCAATCTGTGATGTATAATATTCAAACGATAGCATTTTGCTTATATATATGAGATCTAATACCTTTACCGTTACTGTTATCGTTAACGTTACATATATTGTTACTGTAACAGTATGAAAATTATGAATCTGCCACATTTATTGTTATCTTTACTATTACCGTCGCTTTTACTTTTAGGATCAAACAGTAATGTTAACAATTAACGGTAATAGTAAAATATGACAGGTTCATAATTTTAAGTAAATGCAATCAAGAGCAATCCAATTACATTTGTGATTCAGGTCCATTACGATTGATCTATCAATGAAATATCATTATGATTACATCAATTTTCATTATGAATTGGTAAACAT

Coding sequence (CDS)

ATGACGGTAGCACATGTTCAAGGGAGGGCTGGTACACAAAAGCATGACAAGAGACCATGGGCCAAGAAGAATGCACAGGCAGATGGGGATGAAGACCTTGGGGAAGACACTGCTGGAAATTTTGTGAAGATGAAGGGAAGACTGAAGAGGTTCCTTAATCACATGAAGTGTCGGAATGCAAATGTTGACAAGGATAAAGTGAAGGCTGCTTTAAAAGCGCAGCAAGATCAACAGCTTGATAATGCAAGACGGTATTTCTCAGATCTTGAGGTTACTGAAAAGGAAATCGAGCAGATGGTGATGGAAGCTTCGAGAGCTGAATATCTTGCTAAATACTCTTTGAAGCAGCAATTAGACCGAAGAGACAACTCCACCTCTGGTGCAGAACCGTCTTCTTCAGGCGCCAGGTCCTCAGGAAGTGAAGGTAATTGTAAGAGAGAGAGTGGGGTGCAGGAGTCAGTTTTAAGCAATGCGATGCGAACGGTGCTTTCGATGGGGTTCGGTTATCTACAGGTGATTGAAGCTTATAGCATATTTGGAGACGATGTGGATTCAATGGTTTGTTATTTGTTGGAAACTGGGGATAACAGCAGACGCAAAGGCAAAGCCACAGAATGA

Protein sequence

MTVAHVQGRAGTQKHDKRPWAKKNAQADGDEDLGEDTAGNFVKMKGRLKRFLNHMKCRNANVDKDKVKAALKAQQDQQLDNARRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE

Homology

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BLAST of Lsi02G011960 vs. ExPASy Swiss-Prot
Match: Q9XIP2 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 OS=Arabidopsis thaliana OX=3702 GN=OTU6 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 93/151 (61.59%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGAR SGS+     E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGARPSGSDSK-PAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 505

[Close]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL
Match: A0A1S3CE30 (OTU domain-containing protein 5-B OS=Cucumis melo OX=3656 GN=LOC103499811 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFGDDVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGDDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL
Match: A0A0A0LVH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166830 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.4e-66
Identity = 143/158 (90.51%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFG+DVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGEDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL
Match: A0A5D3E6Q5 (OTU domain-containing protein 5-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002250 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.2e-65
Identity = 143/158 (90.51%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAK SLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKCSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFGDDVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGDDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL
Match: A0A6J1IDM4 (OTU domain-containing protein 5-B OS=Cucurbita maxima OX=3661 GN=LOC111471647 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.2e-61
Identity = 138/160 (86.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQ+DN+     RYFSDLEVTEKEIEQMVMEASR E
Sbjct: 383 LGFSSLRGANVDKDKVKAALKAQQDQQIDNSLLAQGRYFSDLEVTEKEIEQMVMEASRTE 442

Query: 112 YLAKYSLKQQLDRRDN-STSGAEPSSSGARSSGSEGNCKRES-GVQESVLSNAMRTVLSM 171
           YLAKYS KQQLDRRDN ST GAEPSSSGARSSGSEGNCKRES GVQESVLSN M+TVLSM
Sbjct: 443 YLAKYSSKQQLDRRDNSSTPGAEPSSSGARSSGSEGNCKRESGGVQESVLSNGMQTVLSM 502

Query: 172 GFGYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
           GFGYLQVIEAYSIFGDDVDSMVCYLLETG++SRRKGKATE
Sbjct: 503 GFGYLQVIEAYSIFGDDVDSMVCYLLETGESSRRKGKATE 542

[Close]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL
Match: A0A6J1EGU1 (OTU domain-containing protein 5-B OS=Cucurbita moschata OX=3662 GN=LOC111434182 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.2e-61
Identity = 138/160 (86.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQ+DN+     RYFSDLEVTEKEIEQMVMEASR E
Sbjct: 383 LGFSSLRGANVDKDKVKAALKAQQDQQIDNSLLAQGRYFSDLEVTEKEIEQMVMEASRTE 442

Query: 112 YLAKYSLKQQLDRRDN-STSGAEPSSSGARSSGSEGNCKRES-GVQESVLSNAMRTVLSM 171
           YLAKYS KQQLDRRDN ST GAEPSSSGARSSGSEGNCKRES GVQESVLSN M+TVLSM
Sbjct: 443 YLAKYSSKQQLDRRDNSSTPGAEPSSSGARSSGSEGNCKRESGGVQESVLSNGMQTVLSM 502

Query: 172 GFGYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
           GFGYLQVIEAYSIFGDDVDSMVCYLLETG++SRRKGKATE
Sbjct: 503 GFGYLQVIEAYSIFGDDVDSMVCYLLETGESSRRKGKATE 542

[Close]

BLAST of Lsi02G011960 vs. NCBI nr
Match: XP_008461144.1 (PREDICTED: OTU domain-containing protein 5-B [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 5.9e-66
Identity = 144/158 (91.14%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFGDDVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGDDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. NCBI nr
Match: XP_011654529.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X2 [Cucumis sativus] >KGN64954.1 hypothetical protein Csa_022881 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.7e-65
Identity = 143/158 (90.51%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFG+DVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGEDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. NCBI nr
Match: XP_038894332.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X1 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 3.8e-65
Identity = 142/158 (89.87%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 378 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 437

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLA+YSLK QLDRRDNST GAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 438 YLARYSLKHQLDRRDNSTPGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 497

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
           GYLQVIEAYSIFGDDVDSMVCYLLETGD+SRRKGKATE
Sbjct: 498 GYLQVIEAYSIFGDDVDSMVCYLLETGDSSRRKGKATE 535

[Close]

BLAST of Lsi02G011960 vs. NCBI nr
Match: XP_031743320.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X1 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.8e-65
Identity = 147/177 (83.05%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 33  LGEDTAGNFVKMKGRLKRFLNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSD 92
           LG     NF+K K     +        ANVDKDKVKAALKAQQDQQLDNA     RYFSD
Sbjct: 389 LGRSGGQNFLKPKASNLGW--------ANVDKDKVKAALKAQQDQQLDNALLAQGRYFSD 448

Query: 93  LEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRES 152
           LEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRES
Sbjct: 449 LEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRES 508

Query: 153 GVQESVLSNAMRTVLSMGFGYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
           GVQESVLSN MRTVLSMGF YLQVIEAYSIFG+DVDSMVCYLLETGD+SRRKGKATE
Sbjct: 509 GVQESVLSNGMRTVLSMGFSYLQVIEAYSIFGEDVDSMVCYLLETGDSSRRKGKATE 557

[Close]

BLAST of Lsi02G011960 vs. NCBI nr
Match: KAA0035540.1 (OTU domain-containing protein 5-B [Cucumis melo var. makuwa] >TYK30995.1 OTU domain-containing protein 5-B [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 6.6e-65
Identity = 143/158 (90.51%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 52  LNHMKCRNANVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAE 111
           L     R ANVDKDKVKAALKAQQDQQLDNA     RYFSDLEVTEKEIEQMVMEASRAE
Sbjct: 379 LGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAE 438

Query: 112 YLAKYSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGF 171
           YLAK SLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSN MRTVLSMGF
Sbjct: 439 YLAKCSLKQQLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNGMRTVLSMGF 498

Query: 172 GYLQVIEAYSIFGDDVDSMVCYLLETGDNSRRKGKATE 206
            YLQVIEAYSIFGDDVDSMVCYLLETGD+SRRKGKATE
Sbjct: 499 SYLQVIEAYSIFGDDVDSMVCYLLETGDSSRRKGKATE 536

[Close]

BLAST of Lsi02G011960 vs. TAIR 10
Match: AT2G27350.1 (OTU-like cysteine protease family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 93/151 (61.59%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGAR SGS+     E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGARPSGSDSK-PAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 505

[Close]

BLAST of Lsi02G011960 vs. TAIR 10
Match: AT2G27350.2 (OTU-like cysteine protease family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 93/151 (61.59%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGAR SGS+     E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGARPSGSDSK-PAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 505

[Close]

BLAST of Lsi02G011960 vs. TAIR 10
Match: AT2G27350.5 (OTU-like cysteine protease family protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-37
Identity = 89/151 (58.94%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGA       +   E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGATGPSGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 506

[Close]

BLAST of Lsi02G011960 vs. TAIR 10
Match: AT2G27350.3 (OTU-like cysteine protease family protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-37
Identity = 89/151 (58.94%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGA       +   E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGATGPSGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 506

[Close]

BLAST of Lsi02G011960 vs. TAIR 10
Match: AT2G27350.4 (OTU-like cysteine protease family protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-37
Identity = 89/151 (58.94%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 61  NVDKDKVKAALKAQQDQQLDNA----RRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQ 120
           +VDK++VKAA+KAQQ+ Q+DNA     R++SDLE+TEKEIE+ VMEASRAEYL ++S K 
Sbjct: 357 HVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWS-KP 416

Query: 121 QLDRRDNSTSGAEPSSSGARSSGSEGNCKRESGVQESVLSNAMRTVLSMGFGYLQVIEAY 180
           ++  +++STS AE SSSGA       +   E+  +++VLS+++  VLSMGF Y Q +EAY
Sbjct: 417 RIGPKESSTSNAETSSSGATGPSGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAY 476

Query: 181 SIFGDDVDSMVCYLLET--GDNSRRKGKATE 206
           SIFGDDVDSMVCY+LET  G N+RRKGKATE
Sbjct: 477 SIFGDDVDSMVCYVLETSCGGNNRRKGKATE 506

The following BLAST results are available for this feature:

BLAST of Lsi02G011960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIP2	2.1e-37	61.59	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 OS=Arabidopsis thalian...	[more]

BLAST of Lsi02G011960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CE30	2.9e-66	91.14	OTU domain-containing protein 5-B OS=Cucumis melo OX=3656 GN=LOC103499811 PE=4 S...	[more]
A0A0A0LVH3	8.4e-66	90.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166830 PE=4 SV=1	[more]
A0A5D3E6Q5	3.2e-65	90.51	OTU domain-containing protein 5-B OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1IDM4	6.2e-61	86.25	OTU domain-containing protein 5-B OS=Cucurbita maxima OX=3661 GN=LOC111471647 PE...	[more]
A0A6J1EGU1	6.2e-61	86.25	OTU domain-containing protein 5-B OS=Cucurbita moschata OX=3662 GN=LOC111434182 ...	[more]

BLAST of Lsi02G011960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461144.1	5.9e-66	91.14	PREDICTED: OTU domain-containing protein 5-B [Cucumis melo]	[more]
XP_011654529.1	1.7e-65	90.51	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X2 [Cucumis sa...	[more]
XP_038894332.1	3.8e-65	89.87	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X1 [Benincasa ...	[more]
XP_031743320.1	3.8e-65	83.05	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 isoform X1 [Cucumis sa...	[more]
KAA0035540.1	6.6e-65	90.51	OTU domain-containing protein 5-B [Cucumis melo var. makuwa] >TYK30995.1 OTU dom...	[more]

BLAST of Lsi02G011960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27350.1	1.5e-38	61.59	OTU-like cysteine protease family protein	[more]
AT2G27350.2	1.5e-38	61.59	OTU-like cysteine protease family protein	[more]
AT2G27350.5	4.7e-37	58.94	OTU-like cysteine protease family protein	[more]
AT2G27350.3	4.7e-37	58.94	OTU-like cysteine protease family protein	[more]
AT2G27350.4	4.7e-37	58.94	OTU-like cysteine protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR12419:SF66	OTU DOMAIN-CONTAINING PROTEIN 5-LIKE ISOFORM X1	coord: 58..151
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 58..151
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 149..193 score: 8.811843
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 148..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011960.1	Lsi02G011960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070536	protein K63-linked deubiquitination
molecular_function	GO:0061578	Lys63-specific deubiquitinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004843	thiol-dependent deubiquitinase